1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Oh, D.
Kim, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
DK
J.Pept.Res.
JPERFA
2150
1397-002X
53
578
589
10.1034/j.1399-3011.1999.00067.x
10424354
NMR structural characterization of cecropin A(1-8) - magainin 2(1-12) and cecropin A (1-8) - melittin (1-12) hybrid peptides.
1999
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2295.918
CECROPIN A(1-8)-MAGAININ 2 HYBRID PEPTIDE ANALOGUE
1
man
polymer
no
yes
KAKLFKKIGIGKFLHSAKKF(NH2)
KAKLFKKIGIGKFLHSAKKFX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
African clawed frog, cecropia moth
Xenopus, Hyalophora
,
,
sample
MEMBRANE
8355,7123
Xenopus laevis, Hyalophora cecropia
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1999-11-12
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-06-27
_struct_ref_seq_dif.details
1D9J CONTAINS THE CA-MA HYBRID PEPTIDE.
1D9L CONTAINS THE ANALOGUE OF CA-MA HYBRID PEPTIDE(P1:GIG DELETED).
1D9M CONTAINS THE ANALOGUE OF CA-MA HYBRID PEPTIDE(P2:GIG SUBSTITUTED BY PRO).
SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE ANALOGUE (SUBSTITUTION TRP2 OF CA-MA TO LEU)
RCSB
Y
RCSB
1999-10-29
REL
REL
THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES.
structures with the lowest energy
50
20
2D NOESY
2D NOESY
2D NOESY
DQF-COSY
2D NOESY
4.05
1
atm
303
K
4.05
1
atm
298
K
4.05
1
atm
318
K
HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING
2MM PEPTIDE; 90MM DPC MICELLES; 90% H2O, 10% D2O
2MM PEPTIDE; 90MM DPC MICELLES; D2O
collection
XWINNMR
2.5
processing
FELIX
95.0
data analysis
FELIX
95.0
BRUNGER
refinement
X-PLOR
3.851
400
Bruker
Avance
600
Bruker
AMX
LYS
1
n
1
LYS
1
A
ALA
2
n
2
ALA
2
A
LYS
3
n
3
LYS
3
A
LEU
4
n
4
LEU
4
A
PHE
5
n
5
PHE
5
A
LYS
6
n
6
LYS
6
A
LYS
7
n
7
LYS
7
A
ILE
8
n
8
ILE
8
A
GLY
9
n
9
GLY
9
A
ILE
10
n
10
ILE
10
A
GLY
11
n
11
GLY
11
A
LYS
12
n
12
LYS
12
A
PHE
13
n
13
PHE
13
A
LEU
14
n
14
LEU
14
A
HIS
15
n
15
HIS
15
A
SER
16
n
16
SER
16
A
ALA
17
n
17
ALA
17
A
LYS
18
n
18
LYS
18
A
LYS
19
n
19
LYS
19
A
PHE
20
n
20
PHE
20
A
NH2
21
n
21
NH2
21
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
10
A
A
O
H
ILE
PHE
10
13
1.51
1
A
LEU
4
-132.42
-80.21
1
A
PHE
5
-71.20
-156.47
2
A
ILE
8
-127.00
-57.28
3
A
LEU
4
-148.91
40.07
4
A
LEU
4
-145.58
20.43
4
A
ILE
8
-127.24
-50.81
5
A
ALA
2
-156.26
58.96
5
A
PHE
5
-75.96
-166.20
5
A
LYS
6
-162.04
-41.28
5
A
LYS
19
-85.65
-72.97
6
A
ALA
2
58.39
-171.29
6
A
PHE
5
-84.29
31.87
6
A
LYS
6
-145.65
49.80
6
A
ILE
8
-126.95
-55.81
7
A
ALA
2
54.60
172.45
7
A
LYS
6
-150.69
71.41
7
A
ILE
8
-139.13
-61.75
7
A
PHE
13
-53.49
-100.42
8
A
ALA
2
-45.63
98.01
8
A
LYS
3
-163.09
117.96
8
A
PHE
5
-66.89
76.94
8
A
LYS
7
-171.97
-162.64
9
A
LYS
6
-158.32
38.26
9
A
LYS
7
-151.95
74.91
9
A
ILE
8
-126.58
-63.30
9
A
LYS
12
-37.31
-31.48
9
A
PHE
13
-44.94
-86.63
10
A
ALA
2
178.43
108.39
10
A
ILE
8
-128.65
-59.74
11
A
ALA
2
51.95
-171.53
11
A
LYS
3
-171.18
128.93
11
A
LEU
4
-161.05
46.45
12
A
ALA
2
61.29
120.28
12
A
LYS
6
-150.35
57.20
12
A
PHE
13
-55.05
-75.62
13
A
LEU
4
-147.47
26.47
13
A
LYS
6
-168.86
-71.81
13
A
LYS
7
177.78
118.32
13
A
ILE
8
-127.48
-66.39
14
A
ALA
2
-161.96
106.66
14
A
PHE
5
-77.67
-159.91
15
A
ALA
2
49.30
84.95
15
A
LYS
6
-151.15
50.79
15
A
HIS
15
-70.60
-72.22
16
A
LEU
4
-176.58
61.89
16
A
LYS
6
-149.60
37.48
16
A
HIS
15
-67.42
-70.70
17
A
LYS
6
-164.25
47.59
17
A
LYS
19
-85.79
-75.46
18
A
LYS
3
-170.87
106.82
18
A
LYS
6
-166.92
55.17
18
A
PHE
13
-73.82
-87.52
19
A
ALA
2
-56.20
96.06
19
A
LEU
4
-160.17
27.94
20
A
LYS
6
-163.44
-39.25
20
A
LYS
7
179.57
96.89
20
A
ILE
8
-129.87
-69.86
20
A
PHE
13
-59.79
-105.35
CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE ANALOGUE(P3)
SOLUTION STRUCTURE OF CECROPIN A(1-8)-MAGAININ 2(1-12) HYBRID PEPTIDE ANALOGUE(P3)
1
N
N
A
GLY
11
A
GLY
11
HELX_P
A
PHE
20
A
PHE
20
1
1
10
covale
1.305
A
PHE
20
A
C
PHE
20
1_555
A
NH2
21
A
N
NH2
21
1_555
MEMBRANE PROTEIN
RANDOM-HINGE-HELIX, MEMBRANE PROTEIN
CECA_HYACE
UNP
1
P01507
MAGA_XENLA
UNP
1
P11006
27
34
1D9O
1
8
P01507
A
1
1
8
129
140
1D9O
9
20
P11006
A
2
9
20
1
TRP
ENGINEERED mutation
ALA
2
1D9O
A
P01507
UNP
28
2
1
amidation
NH2
21
1D9O
A
P11006
UNP
21
BINDING SITE FOR RESIDUE NH2 A 21
Software
2
A
LYS
19
A
LYS
19
2
1_555
A
PHE
20
A
PHE
20
2
1_555
1
P 1