0.044032 0.000000 0.000000 0.000000 0.014877 0.000000 0.000000 0.000000 0.013792 0.00000 0.00000 0.00000 Gao, Y.-G. Robinson, H. Sanishvili, R. Joachimiak, A. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 22.711 67.216 72.504 C9 H12 Br N2 O8 P 387.078 n 5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Co H18 N6 3 161.116 COBALT HEXAMMINE(III) non-polymer N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N O N 8 N O N 9 N BR N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N O N 35 N P N 36 N O N 37 N O N 38 N O N 39 N C N 40 R C N 41 N O N 42 S C N 43 N O N 44 N C N 45 R C Y 46 N N Y 47 N C Y 48 N N Y 49 N C Y 50 N C N 51 N N Y 52 N N Y 53 N C Y 54 N N Y 55 N C N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N O N 71 N P N 72 N O N 73 N O N 74 N O N 75 N C N 76 R C N 77 N O N 78 S C N 79 N O N 80 N C N 81 R C N 82 N N N 83 N C N 84 N O N 85 N N N 86 N C N 87 N N N 88 N C N 89 N C N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N O N 105 N P N 106 N O N 107 N O N 108 N O N 109 N C N 110 R C N 111 N O N 112 S C N 113 N O N 114 N C N 115 R C Y 116 N N Y 117 N C Y 118 N N Y 119 N C N 120 N C N 121 N O N 122 N N N 123 N C N 124 N N N 125 N N Y 126 N C N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N O N 142 N H N 143 N H N 144 N CO N 145 N N N 146 N N N 147 N N N 148 N N N 149 N N N 150 N N N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N doub N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N doub N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing Y 58 N sing Y 59 N sing Y 60 N doub N 61 N sing Y 62 N sing Y 63 N sing Y 64 N doub N 65 N sing Y 66 N doub N 67 N sing N 68 N sing Y 69 N sing Y 70 N doub N 71 N sing Y 72 N sing N 73 N sing N 74 N sing N 75 N doub N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing Y 131 N sing Y 132 N sing Y 133 N doub N 134 N sing Y 135 N sing N 136 N sing Y 137 N doub N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing US Biochemistry BICHAW 0033 0006-2960 38 16452 16460 10.1021/bi9914614 10600106 Structure and recognition of sheared tandem G x A base pairs associated with human centromere DNA sequence at atomic resolution. 1999 10.2210/pdb1d9r/pdb pdb_00001d9r 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123 1 CCD 1998-08-16 CUSTOM-MADE SINGLE WAVELENGTH M x-ray 1 0.9611 1.0 19-ID APS 0.9611 SYNCHROTRON APS BEAMLINE 19-ID 3158.913 5'-D(*CP*CP*GP*AP*AP*(BRU)P*GP*AP*GP*G)-3' 2 syn polymer 161.116 COBALT HEXAMMINE(III) 1 syn non-polymer 18.015 water 133 nat water no yes (DC)(DC)(DG)(DA)(DA)(BRU)(DG)(DA)(DG)(DG) CCGAAUGAGG A,B polydeoxyribonucleotide n n n n n n n n n n 1 2.10 41.0 VAPOR DIFFUSION, SITTING DROP 7.5 MPD, COBALT HEXAMMINE, MGCL2, TRIS, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 [CO(NH3)6]CL3 1 MGCL2 1 TRIS 1 MPD 1 MPD 2 -4.962 1 19 A 1 B 20 2.328 A_DC1:DG20_B 1 -10.942 0.203 0.434 -0.307 2.480 1 19 A 2 B 19 -0.705 A_DC2:DG19_B 2 6.284 0.223 -0.123 -0.117 29.510 9 11 A 3 B 18 3.732 A_DG3:DA18_B 3 3.876 6.473 0.769 -4.480 -32.870 9 11 A 4 B 17 4.664 A_DA4:DG17_B 4 -8.907 -6.513 0.592 -4.415 -7.746 1 20 A 5 B 16 3.011 A_DA5:BRU16_B 5 5.183 0.053 -0.020 -0.064 4.136 1 20 A 6 B 15 -1.389 A_BRU6:DA15_B 6 5.412 0.038 -0.312 -0.158 36.149 9 11 A 7 B 14 1.144 A_DG7:DA14_B 7 -5.408 6.665 0.673 -4.624 -31.466 9 11 A 8 B 13 3.016 A_DA8:DG13_B 8 -1.026 -6.544 0.612 -4.478 1.028 1 19 A 9 B 12 -2.448 A_DG9:DC12_B 9 8.310 -0.231 -0.031 -0.163 12.046 1 19 A 10 B 11 -2.740 A_DG10:DC11_B 10 -8.424 -0.170 0.324 -0.193 3.524 35.503 A A 1 2 6.191 B B 20 19 3.312 3.749 0.909 1.199 AA_DC1DC2:DG19DG20_BB 1 6.303 -10.406 34.761 1.387 -0.516 3.056 57.371 A A 2 3 7.246 B B 19 18 2.952 6.935 0.529 1.556 AA_DC2DG3:DA18DG19_BB 2 -4.864 5.083 56.794 1.273 -0.795 3.310 -6.244 A A 3 4 31.544 B B 18 17 4.859 -3.206 0.200 -1.263 AA_DG3DA4:DG17DA18_BB 3 -1.911 -18.796 -5.007 32.946 -10.891 3.196 64.609 A A 4 5 1.848 B B 17 16 3.198 1.974 -0.930 1.341 AA_DA4DA5:BRU16DG17_BB 4 2.725 -2.551 64.531 1.173 0.983 2.961 24.020 A A 5 6 12.520 B B 16 15 3.139 5.158 -0.198 -0.285 AA_DA5BRU6:DA15BRU16_BB 5 2.907 -7.056 23.289 -2.259 1.363 3.100 67.428 A A 6 7 4.074 B B 15 14 3.029 4.519 0.835 1.959 AA_BRU6DG7:DA14DA15_BB 6 -3.308 2.983 67.223 1.601 -0.872 4.847 -7.671 A A 7 8 0.769 B B 14 13 4.876 -0.103 -0.072 -1.456 AA_DG7DA8:DG13DA14_BB 7 0.603 4.510 -7.647 11.370 2.315 2.872 57.750 A A 8 9 3.184 B B 13 12 2.834 3.074 -0.713 1.493 AA_DA8DG9:DC12DG13_BB 8 2.545 -2.637 57.624 1.402 0.857 3.209 32.994 A A 9 10 14.471 B B 12 11 3.287 8.111 -0.204 0.093 AA_DG9DG10:DC11DC12_BB 9 -4.752 8.478 31.662 -1.233 -0.459 software struct_conn chem_comp_atom chem_comp_bond database_2 struct_conn struct_conn_type struct_site repository Initial release Version format compliance Version format compliance Data collection Derived calculations Refinement description Data collection Database references Derived calculations 1 0 1999-11-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2019-07-24 1 4 2024-02-07 _software.name _struct_conn.pdbx_leaving_atom_flag _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G A BASE PAIRS RCSB Y RCSB 1999-10-29 REL REL NCO COBALT HEXAMMINE(III) HOH water NCO 21 2 NCO NCO 21 A HOH 1004 3 HOH HOH 1004 A HOH 1005 3 HOH HOH 1005 A HOH 1008 3 HOH HOH 1008 A HOH 1009 3 HOH HOH 1009 A HOH 1011 3 HOH HOH 1011 A HOH 1012 3 HOH HOH 1012 A HOH 1015 3 HOH HOH 1015 A HOH 1017 3 HOH HOH 1017 A HOH 1018 3 HOH HOH 1018 A HOH 1020 3 HOH HOH 1020 A HOH 1021 3 HOH HOH 1021 A HOH 1029 3 HOH HOH 1029 A HOH 1030 3 HOH HOH 1030 A HOH 1031 3 HOH HOH 1031 A HOH 1035 3 HOH HOH 1035 A HOH 1036 3 HOH HOH 1036 A HOH 1037 3 HOH HOH 1037 A HOH 1038 3 HOH HOH 1038 A HOH 1039 3 HOH HOH 1039 A HOH 1040 3 HOH HOH 1040 A HOH 1041 3 HOH HOH 1041 A HOH 1045 3 HOH HOH 1045 A HOH 1048 3 HOH HOH 1048 A HOH 1053 3 HOH HOH 1053 A HOH 1055 3 HOH HOH 1055 A HOH 1056 3 HOH HOH 1056 A HOH 1057 3 HOH HOH 1057 A HOH 1058 3 HOH HOH 1058 A HOH 1061 3 HOH HOH 1061 A HOH 1062 3 HOH HOH 1062 A HOH 1064 3 HOH HOH 1064 A HOH 1065 3 HOH HOH 1065 A HOH 1069 3 HOH HOH 1069 A HOH 1071 3 HOH HOH 1071 A HOH 1073 3 HOH HOH 1073 A HOH 1078 3 HOH HOH 1078 A HOH 1082 3 HOH HOH 1082 A HOH 1084 3 HOH HOH 1084 A HOH 1085 3 HOH HOH 1085 A HOH 1090 3 HOH HOH 1090 A HOH 1094 3 HOH HOH 1094 A HOH 1096 3 HOH HOH 1096 A HOH 1097 3 HOH HOH 1097 A HOH 1098 3 HOH HOH 1098 A HOH 1099 3 HOH HOH 1099 A HOH 1101 3 HOH HOH 1101 A HOH 1102 3 HOH HOH 1102 A HOH 1103 3 HOH HOH 1103 A HOH 1104 3 HOH HOH 1104 A HOH 1106 3 HOH HOH 1106 A HOH 1108 3 HOH HOH 1108 A HOH 1112 3 HOH HOH 1112 A HOH 1116 3 HOH HOH 1116 A HOH 1117 3 HOH HOH 1117 A HOH 1120 3 HOH HOH 1120 A HOH 1121 3 HOH HOH 1121 A HOH 1122 3 HOH HOH 1122 A HOH 1124 3 HOH HOH 1124 A HOH 1126 3 HOH HOH 1126 A HOH 1127 3 HOH HOH 1127 A HOH 1128 3 HOH HOH 1128 A HOH 1130 3 HOH HOH 1130 A HOH 1131 3 HOH HOH 1131 A HOH 1132 3 HOH HOH 1132 A HOH 1001 3 HOH HOH 1001 B HOH 1002 3 HOH HOH 1002 B HOH 1003 3 HOH HOH 1003 B HOH 1006 3 HOH HOH 1006 B HOH 1007 3 HOH HOH 1007 B HOH 1010 3 HOH HOH 1010 B HOH 1013 3 HOH HOH 1013 B HOH 1014 3 HOH HOH 1014 B HOH 1016 3 HOH HOH 1016 B HOH 1019 3 HOH HOH 1019 B HOH 1022 3 HOH HOH 1022 B HOH 1023 3 HOH HOH 1023 B HOH 1024 3 HOH HOH 1024 B HOH 1025 3 HOH HOH 1025 B HOH 1026 3 HOH HOH 1026 B HOH 1027 3 HOH HOH 1027 B HOH 1028 3 HOH HOH 1028 B HOH 1032 3 HOH HOH 1032 B HOH 1033 3 HOH HOH 1033 B HOH 1034 3 HOH HOH 1034 B HOH 1042 3 HOH HOH 1042 B HOH 1043 3 HOH HOH 1043 B HOH 1044 3 HOH HOH 1044 B HOH 1046 3 HOH HOH 1046 B HOH 1047 3 HOH HOH 1047 B HOH 1049 3 HOH HOH 1049 B HOH 1050 3 HOH HOH 1050 B HOH 1051 3 HOH HOH 1051 B HOH 1052 3 HOH HOH 1052 B HOH 1054 3 HOH HOH 1054 B HOH 1059 3 HOH HOH 1059 B HOH 1060 3 HOH HOH 1060 B HOH 1063 3 HOH HOH 1063 B HOH 1066 3 HOH HOH 1066 B HOH 1067 3 HOH HOH 1067 B HOH 1068 3 HOH HOH 1068 B HOH 1070 3 HOH HOH 1070 B HOH 1072 3 HOH HOH 1072 B HOH 1074 3 HOH HOH 1074 B HOH 1075 3 HOH HOH 1075 B HOH 1076 3 HOH HOH 1076 B HOH 1077 3 HOH HOH 1077 B HOH 1079 3 HOH HOH 1079 B HOH 1080 3 HOH HOH 1080 B HOH 1081 3 HOH HOH 1081 B HOH 1083 3 HOH HOH 1083 B HOH 1086 3 HOH HOH 1086 B HOH 1087 3 HOH HOH 1087 B HOH 1088 3 HOH HOH 1088 B HOH 1089 3 HOH HOH 1089 B HOH 1091 3 HOH HOH 1091 B HOH 1092 3 HOH HOH 1092 B HOH 1093 3 HOH HOH 1093 B HOH 1095 3 HOH HOH 1095 B HOH 1100 3 HOH HOH 1100 B HOH 1105 3 HOH HOH 1105 B HOH 1107 3 HOH HOH 1107 B HOH 1109 3 HOH HOH 1109 B HOH 1110 3 HOH HOH 1110 B HOH 1111 3 HOH HOH 1111 B HOH 1113 3 HOH HOH 1113 B HOH 1114 3 HOH HOH 1114 B HOH 1115 3 HOH HOH 1115 B HOH 1118 3 HOH HOH 1118 B HOH 1119 3 HOH HOH 1119 B HOH 1123 3 HOH HOH 1123 B HOH 1125 3 HOH HOH 1125 B HOH 1129 3 HOH HOH 1129 B HOH 1133 3 HOH HOH 1133 B C 1 n 1 DC 1 A C 2 n 2 DC 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A A 5 n 5 DA 5 A +U 6 n 6 BRU 6 A G 7 n 7 DG 7 A A 8 n 8 DA 8 A G 9 n 9 DG 9 A G 10 n 10 DG 10 A C 11 n 1 DC 11 B C 12 n 2 DC 12 B G 13 n 3 DG 13 B A 14 n 4 DA 14 B A 15 n 5 DA 15 B +U 16 n 6 BRU 16 B G 17 n 7 DG 17 B A 18 n 8 DA 18 B G 19 n 9 DG 19 B G 20 n 10 DG 20 B author_defined_assembly 2 dimeric A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 1_555 88.0 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N2 NCO 1_555 175.6 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N2 NCO 1_555 88.9 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 1_555 92.3 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 1_555 89.5 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 1_555 90.8 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 1_555 88.8 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 1_555 90.2 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 1_555 88.0 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 1_555 178.8 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 1_555 0.0 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 1_555 88.0 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 1_555 175.6 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 1_555 92.3 A NCO 21 C N4 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 1_555 88.8 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 1_555 90.8 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 1_555 178.7 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 1_555 92.3 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 1_555 91.0 A NCO 21 C N4 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 1_555 89.4 A NCO 21 C N5 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 1_555 90.7 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 88.0 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 0.0 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 88.8 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 89.5 A NCO 21 C N4 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 90.2 A NCO 21 C N5 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 88.1 A NCO 21 C N6 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 178.7 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 175.6 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 88.9 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 0.0 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 90.8 A NCO 21 C N4 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 88.1 A NCO 21 C N5 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 175.6 A NCO 21 C N6 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 92.4 A NCO 21 C N4 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 88.8 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 88.9 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 90.1 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 88.0 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 178.7 A NCO 21 C N4 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 0.0 A NCO 21 C N5 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 88.9 A NCO 21 C N6 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 89.5 A NCO 21 C N4 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 90.2 A NCO 21 C N5 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 88.0 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 92.3 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 89.5 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 90.8 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 0.0 A NCO 21 C N4 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 178.7 A NCO 21 C N5 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 92.4 A NCO 21 C N6 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 91.0 A NCO 21 C N4 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 89.4 A NCO 21 C N5 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 90.7 A NCO 21 C N1 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 178.7 A NCO 21 C N2 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 90.8 A NCO 21 C N1 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 178.7 A NCO 21 C N2 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 92.3 A NCO 21 C N3 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 90.9 A NCO 21 C N4 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 89.5 A NCO 21 C N5 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 90.8 A NCO 21 C N6 NCO 1_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 0.0 A NCO 21 C N4 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 178.8 A NCO 21 C N5 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 92.3 A NCO 21 C N1 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 89.5 A NCO 21 C N6 NCO 3_555 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 91.0 A BRU 6 A BRU 6 DU B BRU 16 B BRU 6 DU 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A NCO 21 C NCO 1 A HOH 1117 D HOH 1 -3.96 0.60 118.90 114.94 A A A N1 C2 O2 DC DC DC 2 2 2 N 1 -7.32 0.70 108.00 100.68 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 -4.34 0.70 120.20 115.86 B B B C5 C4 N4 DC DC DC 12 12 12 N 1 2.11 0.30 108.30 110.41 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 -7.19 0.70 108.00 100.81 B B B O4' C1' N9 DA DA DA 15 15 15 N 1 3.85 0.60 118.60 122.45 B B B C6 N1 C2 DA DA DA 15 15 15 N 1 -3.45 0.50 117.70 114.25 B B B C5 C6 N1 DA DA DA 15 15 15 N 1 4.89 0.60 118.60 123.49 B B B N1 C6 N6 DA DA DA 15 15 15 N 1 -3.79 0.60 125.10 121.31 B B B C6 N1 C2 DG DG DG 17 17 17 N 1 3.05 0.50 111.50 114.55 B B B C5 C6 N1 DG DG DG 17 17 17 N 1 -3.04 0.50 110.60 107.56 B B B C2 N3 C4 DA DA DA 18 18 18 N 1 3.43 0.50 111.90 115.33 B B B C2 N3 C4 DG DG DG 19 19 19 N 1 3.81 0.50 111.50 115.31 B B B C5 C6 N1 DG DG DG 19 19 19 N 1 -4.86 0.80 105.90 101.04 B B B O4' C1' C2' DG DG DG 20 20 20 N 1 -7.51 0.70 108.00 100.49 B B B O4' C1' N9 DG DG DG 20 20 20 N SHELXL HOPE OPTION 0.278 0.234 0.234 0.234 1.5 10.0 2220 437 8923 8923 1837 5.0 99.9 RANDOM 1 A POSTERIORI 0 0 MAD PHASING BY BROMINES G.PARKINSON, J.VOJTECHOVSKY, L.CLOWNEY, A.T.BRUNGER, H.M.BERMAN SHELXL SWAT OPTION 1.5 10.0 133 554 9 412 0 0.009 0.024 0.052 0.003 0.072 29.8 1.5 10.0 1D9R 8923 8923 0 0 0.055 1 33.7 10.5 99.7 0.377 1.50 1.56 8.1 100.0 refinement SHELXL-97 refinement CNS data reduction HKL-2000 data scaling HKL-2000 phasing CNS CRYSTAL STRUCTURE OF DNA SHEARED TANDEM G-A BASE PAIRS 1 N N 1 N N 2 N N 3 N N 3 N N covale 1.640 both A DA 5 A O3' DA 5 1_555 A BRU 6 A P BRU 6 1_555 covale 1.614 both A BRU 6 A O3' BRU 6 1_555 A DG 7 A P DG 7 1_555 covale 1.598 both B DA 15 B O3' DA 5 1_555 B BRU 16 B P BRU 6 1_555 covale 1.592 both B BRU 16 B O3' BRU 6 1_555 B DG 17 B P DG 7 1_555 metalc 1.993 A NCO 21 C CO NCO 1_555 A NCO 21 C N2 NCO 3_555 metalc 2.019 A NCO 21 C CO NCO 1_555 A NCO 21 C N4 NCO 3_555 metalc 1.994 A NCO 21 C CO NCO 1_555 A NCO 21 C N5 NCO 3_555 metalc 2.018 A NCO 21 C CO NCO 1_555 A NCO 21 C N1 NCO 3_555 metalc 2.013 A NCO 21 C CO NCO 1_555 A NCO 21 C N6 NCO 3_555 metalc 2.012 A NCO 21 C CO NCO 1_555 A NCO 21 C N3 NCO 3_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 20 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 20 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 20 B N2 DG 10 1_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog TYPE_11_PAIR A DG 3 A N2 DG 3 1_555 B DA 18 B N7 DA 8 1_555 hydrog TYPE_11_PAIR A DG 3 A N3 DG 3 1_555 B DA 18 B N6 DA 8 1_555 hydrog TYPE_11_PAIR A DA 4 A N6 DA 4 1_555 B DG 17 B N3 DG 7 1_555 hydrog TYPE_11_PAIR A DA 4 A N7 DA 4 1_555 B DG 17 B N2 DG 7 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B BRU 16 B N3 BRU 6 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B BRU 16 B O4 BRU 6 1_555 hydrog WATSON-CRICK A BRU 6 A N3 BRU 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A BRU 6 A O4 BRU 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog TYPE_11_PAIR A DG 7 A N2 DG 7 1_555 B DA 14 B N7 DA 4 1_555 hydrog TYPE_11_PAIR A DG 7 A N3 DG 7 1_555 B DA 14 B N6 DA 4 1_555 hydrog TYPE_11_PAIR A DA 8 A N6 DA 8 1_555 B DG 13 B N3 DG 3 1_555 hydrog TYPE_11_PAIR A DA 8 A N7 DA 8 1_555 B DG 13 B N2 DG 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B DC 12 B N3 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B DC 12 B O2 DC 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B DC 12 B N4 DC 2 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 11 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 11 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 11 B N4 DC 1 1_555 DNA TANDEM GA BASE PAIRS, GA MISMATCH, DEOXYRIBONUCLEIC ACID, DNA 1D9R PDB 1 1D9R 1 10 1D9R 1 10 1D9R A 1 1 10 11 20 1D9R 11 20 1D9R B 1 1 10 BINDING SITE FOR RESIDUE NCO A 21 A NCO 21 Software 10 A DC 2 A DC 2 10 1_555 A DC 2 A DC 2 10 3_555 A DG 3 A DG 3 10 3_555 A DG 3 A DG 3 10 1_555 A HOH 1056 D HOH 10 1_555 A HOH 1056 D HOH 10 3_555 A HOH 1069 D HOH 10 3_555 A HOH 1069 D HOH 10 1_555 B DG 17 B DG 7 10 3_555 B DG 17 B DG 7 10 1_555 20 orthorhombic C 2 2 21