data_1DA0 # _entry.id 1DA0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DA0 pdb_00001da0 10.2210/pdb1da0/pdb RCSB DDF018 ? ? WWPDB D_1000172695 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-07-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DA0 _pdbx_database_status.recvd_initial_deposition_date 1992-10-17 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Moore, M.H.' 1 'Hunter, W.N.' 2 ;Langlois D'Estaintot, B. ; 3 'Kennard, O.' 4 # _citation.id primary _citation.title 'DNA-drug interactions. The crystal structure of d(CGATCG) complexed with daunomycin.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 206 _citation.page_first 693 _citation.page_last 705 _citation.year 1989 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 2738914 _citation.pdbx_database_id_DOI '10.1016/0022-2836(89)90577-9' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Moore, M.H.' 1 ? primary 'Hunter, W.N.' 2 ? primary ;d'Estaintot, B.L. ; 3 ? primary 'Kennard, O.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') ; 1809.217 1 ? ? ? ? 2 non-polymer syn DAUNOMYCIN 527.520 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DA)(DT)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGATCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name DAUNOMYCIN _pdbx_entity_nonpoly.comp_id DM1 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DA n 1 4 DT n 1 5 DC n 1 6 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM1 non-polymer . DAUNOMYCIN DAUNORUBICIN 'C27 H29 N O10' 527.520 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DT 4 4 4 DT T A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id DM1 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 7 _pdbx_nonpoly_scheme.auth_seq_num 7 _pdbx_nonpoly_scheme.pdb_mon_id DM1 _pdbx_nonpoly_scheme.auth_mon_id DM1 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DA0 _cell.length_a 27.980 _cell.length_b 27.980 _cell.length_c 52.870 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DA0 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1DA0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.86 _exptl_crystal.density_percent_sol 56.99 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 293.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details 'pH 6.50, VAPOR DIFFUSION, temperature 293.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 'MG ACETATE' ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 1 'NA CACODYLATE' ? ? ? 1 6 2 WATER ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 277.00 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'SYNTEX P21' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source ? _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DA0 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.500 _reflns.number_obs 2801 _reflns.number_all 3529 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0900000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1DA0 _refine.ls_number_reflns_obs 1845 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 5.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.000 _refine.ls_d_res_high 1.500 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2500000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 38 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 158 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 10.000 # _database_PDB_matrix.entry_id 1DA0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DA0 _struct.title 'DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) COMPLEXED WITH DAUNOMYCIN' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DA0 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DA0 _struct_ref.pdbx_db_accession 1DA0 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DA0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1DA0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.4350000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 1 A DG 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog6 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 4 N3 ? ? A DA 3 A DT 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 4 O4 ? ? A DA 3 A DT 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 4 A DA 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 4 A DA 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog11 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog12 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 6 A DC 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM1 7 ? 6 'BINDING SITE FOR RESIDUE DM1 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DC A 1 ? DC A 1 . ? 8_555 ? 2 AC1 6 DG A 2 ? DG A 2 . ? 8_555 ? 3 AC1 6 DA A 3 ? DA A 3 . ? 8_555 ? 4 AC1 6 DT A 4 ? DT A 4 . ? 1_555 ? 5 AC1 6 DC A 5 ? DC A 5 . ? 1_555 ? 6 AC1 6 DG A 6 ? DG A 6 . ? 1_555 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 N2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 DG _pdbx_validate_symm_contact.auth_seq_id_1 2 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 DC _pdbx_validate_symm_contact.auth_seq_id_2 5 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 8_555 _pdbx_validate_symm_contact.dist 1.96 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 1 ? ? P A DG 2 ? ? 1.525 1.607 -0.082 0.012 Y 2 1 C2 A DG 2 ? ? N3 A DG 2 ? ? 1.381 1.323 0.058 0.008 N 3 1 C8 A DG 2 ? ? N9 A DG 2 ? ? 1.318 1.374 -0.056 0.007 N 4 1 "O3'" A DG 2 ? ? P A DA 3 ? ? 1.480 1.607 -0.127 0.012 Y 5 1 P A DA 3 ? ? OP1 A DA 3 ? ? 1.628 1.485 0.143 0.017 N 6 1 P A DT 4 ? ? "O5'" A DT 4 ? ? 1.527 1.593 -0.066 0.010 N 7 1 P A DG 6 ? ? "O5'" A DG 6 ? ? 1.525 1.593 -0.068 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DC 1 ? ? "C4'" A DC 1 ? ? "O4'" A DC 1 ? ? 124.65 109.80 14.85 1.10 N 2 1 "C1'" A DC 1 ? ? "O4'" A DC 1 ? ? "C4'" A DC 1 ? ? 116.79 110.30 6.49 0.70 N 3 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 115.21 108.30 6.91 0.30 N 4 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 123.28 119.90 3.38 0.50 N 5 1 C5 A DC 1 ? ? C6 A DC 1 ? ? N1 A DC 1 ? ? 124.57 121.00 3.57 0.50 N 6 1 N3 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 112.31 118.00 -5.69 0.70 N 7 1 C5 A DC 1 ? ? C4 A DC 1 ? ? N4 A DC 1 ? ? 126.43 120.20 6.23 0.70 N 8 1 "O3'" A DC 1 ? ? P A DG 2 ? ? "O5'" A DG 2 ? ? 115.98 104.00 11.98 1.90 Y 9 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 96.00 102.40 -6.40 0.80 N 10 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 111.32 108.30 3.02 0.30 N 11 1 C6 A DG 2 ? ? N1 A DG 2 ? ? C2 A DG 2 ? ? 120.09 125.10 -5.01 0.60 N 12 1 C5 A DG 2 ? ? C6 A DG 2 ? ? N1 A DG 2 ? ? 117.16 111.50 5.66 0.50 N 13 1 C8 A DG 2 ? ? N9 A DG 2 ? ? C4 A DG 2 ? ? 109.45 106.40 3.05 0.40 N 14 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DA 3 ? ? 133.98 119.70 14.28 1.20 Y 15 1 "O3'" A DG 2 ? ? P A DA 3 ? ? OP1 A DA 3 ? ? 118.36 110.50 7.86 1.10 Y 16 1 OP1 A DA 3 ? ? P A DA 3 ? ? OP2 A DA 3 ? ? 95.09 119.60 -24.51 1.50 N 17 1 "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? "C4'" A DA 3 ? ? 103.07 109.40 -6.33 0.80 N 18 1 P A DA 3 ? ? "O5'" A DA 3 ? ? "C5'" A DA 3 ? ? 133.98 120.90 13.08 1.60 N 19 1 "O4'" A DA 3 ? ? "C1'" A DA 3 ? ? N9 A DA 3 ? ? 112.76 108.30 4.46 0.30 N 20 1 C6 A DA 3 ? ? N1 A DA 3 ? ? C2 A DA 3 ? ? 122.47 118.60 3.87 0.60 N 21 1 N1 A DA 3 ? ? C2 A DA 3 ? ? N3 A DA 3 ? ? 121.55 129.30 -7.75 0.50 N 22 1 C2 A DA 3 ? ? N3 A DA 3 ? ? C4 A DA 3 ? ? 116.89 110.60 6.29 0.50 N 23 1 C4 A DA 3 ? ? C5 A DA 3 ? ? C6 A DA 3 ? ? 113.94 117.00 -3.06 0.50 N 24 1 N1 A DA 3 ? ? C6 A DA 3 ? ? N6 A DA 3 ? ? 114.94 118.60 -3.66 0.60 N 25 1 "C3'" A DA 3 ? ? "O3'" A DA 3 ? ? P A DT 4 ? ? 133.74 119.70 14.04 1.20 Y 26 1 OP1 A DT 4 ? ? P A DT 4 ? ? OP2 A DT 4 ? ? 108.67 119.60 -10.93 1.50 N 27 1 "O5'" A DT 4 ? ? P A DT 4 ? ? OP1 A DT 4 ? ? 121.28 110.70 10.58 1.20 N 28 1 "O4'" A DT 4 ? ? "C1'" A DT 4 ? ? "C2'" A DT 4 ? ? 98.36 105.90 -7.54 0.80 N 29 1 C2 A DT 4 ? ? N3 A DT 4 ? ? C4 A DT 4 ? ? 121.42 127.20 -5.78 0.60 N 30 1 N3 A DT 4 ? ? C4 A DT 4 ? ? C5 A DT 4 ? ? 122.48 115.20 7.28 0.60 N 31 1 N1 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 133.04 123.10 9.94 0.80 N 32 1 N3 A DT 4 ? ? C2 A DT 4 ? ? O2 A DT 4 ? ? 109.99 122.30 -12.31 0.60 N 33 1 N3 A DT 4 ? ? C4 A DT 4 ? ? O4 A DT 4 ? ? 113.87 119.90 -6.03 0.60 N 34 1 OP1 A DC 5 ? ? P A DC 5 ? ? OP2 A DC 5 ? ? 140.36 119.60 20.76 1.50 N 35 1 "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? "C4'" A DC 5 ? ? 101.02 109.40 -8.38 0.80 N 36 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? "C2'" A DC 5 ? ? 99.97 105.90 -5.93 0.80 N 37 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 131.19 108.30 22.89 0.30 N 38 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 125.33 118.90 6.43 0.60 N 39 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 115.66 121.90 -6.24 0.70 N 40 1 N3 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 126.48 118.00 8.48 0.70 N 41 1 C5 A DC 5 ? ? C4 A DC 5 ? ? N4 A DC 5 ? ? 113.59 120.20 -6.61 0.70 N 42 1 "C3'" A DC 5 ? ? "O3'" A DC 5 ? ? P A DG 6 ? ? 110.22 119.70 -9.48 1.20 Y 43 1 OP1 A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 129.81 119.60 10.21 1.50 N 44 1 "O5'" A DG 6 ? ? P A DG 6 ? ? OP2 A DG 6 ? ? 99.85 105.70 -5.85 0.90 N 45 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? ? "C4'" A DG 6 ? ? 95.29 109.40 -14.11 0.80 N 46 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 102.20 108.00 -5.80 0.70 N 47 1 C6 A DG 6 ? ? N1 A DG 6 ? ? C2 A DG 6 ? ? 121.30 125.10 -3.80 0.60 N 48 1 C5 A DG 6 ? ? C6 A DG 6 ? ? N1 A DG 6 ? ? 114.88 111.50 3.38 0.50 N 49 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 108.23 110.80 -2.57 0.40 N 50 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 108.66 105.40 3.26 0.40 N 51 1 C6 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 134.01 130.40 3.61 0.60 N 52 1 N1 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 127.10 116.20 10.90 0.90 N 53 1 N3 A DG 6 ? ? C2 A DG 6 ? ? N2 A DG 6 ? ? 106.03 119.90 -13.87 0.70 N # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C5'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id DM1 _pdbx_validate_chiral.auth_seq_id 7 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details 'WRONG HAND' _pdbx_validate_chiral.omega . # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # _refine_B_iso.class 'ALL ATOMS' _refine_B_iso.details TR _refine_B_iso.treatment isotropic _refine_B_iso.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_occupancy.class 'ALL ATOMS' _refine_occupancy.treatment fix _refine_occupancy.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DM1 C1 C Y N 108 DM1 C2 C Y N 109 DM1 C3 C Y N 110 DM1 C4 C Y N 111 DM1 O4 O N N 112 DM1 C5 C Y N 113 DM1 C6 C N N 114 DM1 O6 O N N 115 DM1 C7 C Y N 116 DM1 C8 C Y N 117 DM1 O8 O N N 118 DM1 C9 C Y N 119 DM1 C10 C N S 120 DM1 O10 O N N 121 DM1 C11 C N N 122 DM1 C12 C N S 123 DM1 O12 O N N 124 DM1 C13 C N N 125 DM1 O13 O N N 126 DM1 C14 C N N 127 DM1 C15 C N N 128 DM1 C16 C Y N 129 DM1 C17 C Y N 130 DM1 O17 O N N 131 DM1 C18 C Y N 132 DM1 C19 C N N 133 DM1 O19 O N N 134 DM1 C20 C Y N 135 DM1 C21 C N N 136 DM1 "C1'" C N R 137 DM1 "C2'" C N N 138 DM1 "C3'" C N S 139 DM1 "N3'" N N N 140 DM1 "C4'" C N S 141 DM1 "O4'" O N N 142 DM1 "C5'" C N S 143 DM1 "O5'" O N N 144 DM1 "C6'" C N N 145 DM1 H1 H N N 146 DM1 H2 H N N 147 DM1 H3 H N N 148 DM1 HO8 H N N 149 DM1 H10 H N N 150 DM1 H111 H N N 151 DM1 H112 H N N 152 DM1 HO12 H N N 153 DM1 H141 H N N 154 DM1 H142 H N N 155 DM1 H143 H N N 156 DM1 H151 H N N 157 DM1 H152 H N N 158 DM1 HO17 H N N 159 DM1 H211 H N N 160 DM1 H212 H N N 161 DM1 H213 H N N 162 DM1 "H1'" H N N 163 DM1 "H2'1" H N N 164 DM1 "H2'2" H N N 165 DM1 "H3'" H N N 166 DM1 "HN'1" H N N 167 DM1 "HN'2" H N N 168 DM1 "H4'" H N N 169 DM1 "HO4'" H N N 170 DM1 "H5'" H N N 171 DM1 "H6'1" H N N 172 DM1 "H6'2" H N N 173 DM1 "H6'3" H N N 174 DT OP3 O N N 175 DT P P N N 176 DT OP1 O N N 177 DT OP2 O N N 178 DT "O5'" O N N 179 DT "C5'" C N N 180 DT "C4'" C N R 181 DT "O4'" O N N 182 DT "C3'" C N S 183 DT "O3'" O N N 184 DT "C2'" C N N 185 DT "C1'" C N R 186 DT N1 N N N 187 DT C2 C N N 188 DT O2 O N N 189 DT N3 N N N 190 DT C4 C N N 191 DT O4 O N N 192 DT C5 C N N 193 DT C7 C N N 194 DT C6 C N N 195 DT HOP3 H N N 196 DT HOP2 H N N 197 DT "H5'" H N N 198 DT "H5''" H N N 199 DT "H4'" H N N 200 DT "H3'" H N N 201 DT "HO3'" H N N 202 DT "H2'" H N N 203 DT "H2''" H N N 204 DT "H1'" H N N 205 DT H3 H N N 206 DT H71 H N N 207 DT H72 H N N 208 DT H73 H N N 209 DT H6 H N N 210 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM1 C1 C2 doub Y N 113 DM1 C1 C20 sing Y N 114 DM1 C1 H1 sing N N 115 DM1 C2 C3 sing Y N 116 DM1 C2 H2 sing N N 117 DM1 C3 C4 doub Y N 118 DM1 C3 H3 sing N N 119 DM1 C4 O4 sing N N 120 DM1 C4 C5 sing Y N 121 DM1 O4 C21 sing N N 122 DM1 C5 C6 sing N N 123 DM1 C5 C20 doub Y N 124 DM1 C6 O6 doub N N 125 DM1 C6 C7 sing N N 126 DM1 C7 C8 doub Y N 127 DM1 C7 C18 sing Y N 128 DM1 C8 O8 sing N N 129 DM1 C8 C9 sing Y N 130 DM1 O8 HO8 sing N N 131 DM1 C9 C10 sing N N 132 DM1 C9 C16 doub Y N 133 DM1 C10 O10 sing N N 134 DM1 C10 C11 sing N N 135 DM1 C10 H10 sing N N 136 DM1 O10 "C1'" sing N N 137 DM1 C11 C12 sing N N 138 DM1 C11 H111 sing N N 139 DM1 C11 H112 sing N N 140 DM1 C12 O12 sing N N 141 DM1 C12 C13 sing N N 142 DM1 C12 C15 sing N N 143 DM1 O12 HO12 sing N N 144 DM1 C13 O13 doub N N 145 DM1 C13 C14 sing N N 146 DM1 C14 H141 sing N N 147 DM1 C14 H142 sing N N 148 DM1 C14 H143 sing N N 149 DM1 C15 C16 sing N N 150 DM1 C15 H151 sing N N 151 DM1 C15 H152 sing N N 152 DM1 C16 C17 sing Y N 153 DM1 C17 O17 sing N N 154 DM1 C17 C18 doub Y N 155 DM1 O17 HO17 sing N N 156 DM1 C18 C19 sing N N 157 DM1 C19 O19 doub N N 158 DM1 C19 C20 sing N N 159 DM1 C21 H211 sing N N 160 DM1 C21 H212 sing N N 161 DM1 C21 H213 sing N N 162 DM1 "C1'" "C2'" sing N N 163 DM1 "C1'" "O5'" sing N N 164 DM1 "C1'" "H1'" sing N N 165 DM1 "C2'" "C3'" sing N N 166 DM1 "C2'" "H2'1" sing N N 167 DM1 "C2'" "H2'2" sing N N 168 DM1 "C3'" "N3'" sing N N 169 DM1 "C3'" "C4'" sing N N 170 DM1 "C3'" "H3'" sing N N 171 DM1 "N3'" "HN'1" sing N N 172 DM1 "N3'" "HN'2" sing N N 173 DM1 "C4'" "O4'" sing N N 174 DM1 "C4'" "C5'" sing N N 175 DM1 "C4'" "H4'" sing N N 176 DM1 "O4'" "HO4'" sing N N 177 DM1 "C5'" "O5'" sing N N 178 DM1 "C5'" "C6'" sing N N 179 DM1 "C5'" "H5'" sing N N 180 DM1 "C6'" "H6'1" sing N N 181 DM1 "C6'" "H6'2" sing N N 182 DM1 "C6'" "H6'3" sing N N 183 DT OP3 P sing N N 184 DT OP3 HOP3 sing N N 185 DT P OP1 doub N N 186 DT P OP2 sing N N 187 DT P "O5'" sing N N 188 DT OP2 HOP2 sing N N 189 DT "O5'" "C5'" sing N N 190 DT "C5'" "C4'" sing N N 191 DT "C5'" "H5'" sing N N 192 DT "C5'" "H5''" sing N N 193 DT "C4'" "O4'" sing N N 194 DT "C4'" "C3'" sing N N 195 DT "C4'" "H4'" sing N N 196 DT "O4'" "C1'" sing N N 197 DT "C3'" "O3'" sing N N 198 DT "C3'" "C2'" sing N N 199 DT "C3'" "H3'" sing N N 200 DT "O3'" "HO3'" sing N N 201 DT "C2'" "C1'" sing N N 202 DT "C2'" "H2'" sing N N 203 DT "C2'" "H2''" sing N N 204 DT "C1'" N1 sing N N 205 DT "C1'" "H1'" sing N N 206 DT N1 C2 sing N N 207 DT N1 C6 sing N N 208 DT C2 O2 doub N N 209 DT C2 N3 sing N N 210 DT N3 C4 sing N N 211 DT N3 H3 sing N N 212 DT C4 O4 doub N N 213 DT C4 C5 sing N N 214 DT C5 C7 sing N N 215 DT C5 C6 doub N N 216 DT C7 H71 sing N N 217 DT C7 H72 sing N N 218 DT C7 H73 sing N N 219 DT C6 H6 sing N N 220 # _ndb_struct_conf_na.entry_id 1DA0 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 6 8_555 0.080 -0.467 -0.022 5.455 0.849 -2.537 1 A_DC1:DG6_A A 1 ? A 6 ? 19 1 1 A DG 2 1_555 A DC 5 8_555 0.014 -0.398 -0.201 -11.065 -0.030 6.550 2 A_DG2:DC5_A A 2 ? A 5 ? 22 1 1 A DA 3 1_555 A DT 4 8_555 -0.601 -0.443 -0.015 -7.237 -4.173 -3.874 3 A_DA3:DT4_A A 3 ? A 4 ? 20 1 1 A DT 4 1_555 A DA 3 8_555 0.601 -0.443 -0.015 7.237 -4.173 -3.874 4 A_DT4:DA3_A A 4 ? A 3 ? 20 1 1 A DC 5 1_555 A DG 2 8_555 -0.014 -0.398 -0.201 11.065 -0.030 6.550 5 A_DC5:DG2_A A 5 ? A 2 ? 22 1 1 A DG 6 1_555 A DC 1 8_555 -0.080 -0.467 -0.022 -5.455 0.849 -2.537 6 A_DG6:DC1_A A 6 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 6 8_555 A DG 2 1_555 A DC 5 8_555 1.370 1.205 6.901 -0.454 -4.150 33.139 3.530 -2.540 6.687 -7.241 0.791 33.393 1 AA_DC1DG2:DC5DG6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_555 A DA 3 1_555 A DT 4 8_555 -1.788 0.199 3.316 -2.853 -1.371 25.033 0.874 3.225 3.479 -3.146 6.549 25.229 2 AA_DG2DA3:DT4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DA 3 1_555 A DT 4 8_555 A DT 4 1_555 A DA 3 8_555 0.000 -1.107 3.108 0.000 6.026 43.567 -2.008 0.000 2.937 8.073 0.000 43.962 3 AA_DA3DT4:DA3DT4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DT 4 1_555 A DA 3 8_555 A DC 5 1_555 A DG 2 8_555 1.788 0.199 3.316 2.853 -1.371 25.033 0.874 -3.225 3.479 -3.146 -6.549 25.229 4 AA_DT4DC5:DG2DA3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_555 A DG 6 1_555 A DC 1 8_555 -1.370 1.205 6.901 0.454 -4.150 33.139 3.530 2.540 6.687 -7.241 -0.791 33.393 5 AA_DC5DG6:DC1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1DA0 _atom_sites.fract_transf_matrix[1][1] 0.035740 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035740 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018914 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? -18.629 20.437 23.173 1.00 14.14 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? -17.960 21.455 23.982 1.00 8.69 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? -16.550 21.147 24.288 1.00 13.82 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? -16.116 20.036 25.050 1.00 20.49 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? -15.711 21.005 22.967 1.00 17.46 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? -14.653 21.903 23.199 1.00 18.23 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? -15.403 19.516 22.919 1.00 21.24 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? -15.266 19.085 24.384 1.00 14.09 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? -15.663 17.672 24.537 1.00 12.05 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? -14.712 16.707 24.680 1.00 4.87 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? -13.514 16.987 24.711 1.00 11.19 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? -15.179 15.392 24.748 1.00 4.72 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? -16.472 15.073 24.717 1.00 1.77 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? -16.668 13.777 24.801 1.00 8.34 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? -17.460 16.058 24.627 1.00 8.00 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? -17.012 17.311 24.537 1.00 6.94 ? 1 DC A C6 1 ATOM 17 P P . DG A 1 2 ? -14.029 22.776 22.116 1.00 20.08 ? 2 DG A P 1 ATOM 18 O OP1 . DG A 1 2 ? -13.053 23.495 23.035 1.00 20.87 ? 2 DG A OP1 1 ATOM 19 O OP2 . DG A 1 2 ? -15.221 23.679 21.629 1.00 25.95 ? 2 DG A OP2 1 ATOM 20 O "O5'" . DG A 1 2 ? -13.299 22.026 20.979 1.00 19.12 ? 2 DG A "O5'" 1 ATOM 21 C "C5'" . DG A 1 2 ? -12.015 21.352 21.243 1.00 12.41 ? 2 DG A "C5'" 1 ATOM 22 C "C4'" . DG A 1 2 ? -11.743 20.467 20.048 1.00 14.68 ? 2 DG A "C4'" 1 ATOM 23 O "O4'" . DG A 1 2 ? -12.569 19.309 20.069 1.00 13.38 ? 2 DG A "O4'" 1 ATOM 24 C "C3'" . DG A 1 2 ? -11.950 21.175 18.695 1.00 9.37 ? 2 DG A "C3'" 1 ATOM 25 O "O3'" . DG A 1 2 ? -10.845 20.999 17.833 1.00 17.12 ? 2 DG A "O3'" 1 ATOM 26 C "C2'" . DG A 1 2 ? -13.260 20.493 18.166 1.00 10.88 ? 2 DG A "C2'" 1 ATOM 27 C "C1'" . DG A 1 2 ? -12.958 19.130 18.711 1.00 13.06 ? 2 DG A "C1'" 1 ATOM 28 N N9 . DG A 1 2 ? -14.203 18.363 18.610 1.00 11.11 ? 2 DG A N9 1 ATOM 29 C C8 . DG A 1 2 ? -15.439 18.811 18.520 1.00 9.82 ? 2 DG A C8 1 ATOM 30 N N7 . DG A 1 2 ? -16.296 17.851 18.351 1.00 11.29 ? 2 DG A N7 1 ATOM 31 C C5 . DG A 1 2 ? -15.540 16.679 18.309 1.00 10.56 ? 2 DG A C5 1 ATOM 32 C C6 . DG A 1 2 ? -15.873 15.294 18.161 1.00 7.53 ? 2 DG A C6 1 ATOM 33 O O6 . DG A 1 2 ? -17.015 14.841 18.066 1.00 7.69 ? 2 DG A O6 1 ATOM 34 N N1 . DG A 1 2 ? -14.835 14.396 18.166 1.00 10.01 ? 2 DG A N1 1 ATOM 35 C C2 . DG A 1 2 ? -13.559 14.832 18.319 1.00 3.01 ? 2 DG A C2 1 ATOM 36 N N2 . DG A 1 2 ? -12.577 13.856 18.272 1.00 4.22 ? 2 DG A N2 1 ATOM 37 N N3 . DG A 1 2 ? -13.162 16.150 18.425 1.00 8.25 ? 2 DG A N3 1 ATOM 38 C C4 . DG A 1 2 ? -14.194 17.006 18.415 1.00 6.34 ? 2 DG A C4 1 ATOM 39 P P . DA A 1 3 ? -10.042 21.914 16.992 1.00 17.10 ? 3 DA A P 1 ATOM 40 O OP1 . DA A 1 3 ? -9.614 23.358 17.611 1.00 26.98 ? 3 DA A OP1 1 ATOM 41 O OP2 . DA A 1 3 ? -10.730 22.488 15.776 1.00 21.98 ? 3 DA A OP2 1 ATOM 42 O "O5'" . DA A 1 3 ? -8.713 21.069 16.665 1.00 14.71 ? 3 DA A "O5'" 1 ATOM 43 C "C5'" . DA A 1 3 ? -7.700 20.437 17.479 1.00 18.49 ? 3 DA A "C5'" 1 ATOM 44 C "C4'" . DA A 1 3 ? -7.566 19.052 16.850 1.00 13.46 ? 3 DA A "C4'" 1 ATOM 45 O "O4'" . DA A 1 3 ? -8.886 18.514 16.998 1.00 19.10 ? 3 DA A "O4'" 1 ATOM 46 C "C3'" . DA A 1 3 ? -7.317 19.116 15.348 1.00 9.72 ? 3 DA A "C3'" 1 ATOM 47 O "O3'" . DA A 1 3 ? -6.066 18.470 15.094 1.00 18.44 ? 3 DA A "O3'" 1 ATOM 48 C "C2'" . DA A 1 3 ? -8.453 18.335 14.708 1.00 14.74 ? 3 DA A "C2'" 1 ATOM 49 C "C1'" . DA A 1 3 ? -9.071 17.613 15.893 1.00 14.51 ? 3 DA A "C1'" 1 ATOM 50 N N9 . DA A 1 3 ? -10.476 17.339 15.618 1.00 14.85 ? 3 DA A N9 1 ATOM 51 C C8 . DA A 1 3 ? -11.522 18.207 15.528 1.00 11.82 ? 3 DA A C8 1 ATOM 52 N N7 . DA A 1 3 ? -12.655 17.613 15.274 1.00 10.78 ? 3 DA A N7 1 ATOM 53 C C5 . DA A 1 3 ? -12.348 16.256 15.221 1.00 8.04 ? 3 DA A C5 1 ATOM 54 C C6 . DA A 1 3 ? -13.069 15.076 14.994 1.00 9.80 ? 3 DA A C6 1 ATOM 55 N N6 . DA A 1 3 ? -14.365 14.975 14.793 1.00 9.68 ? 3 DA A N6 1 ATOM 56 N N1 . DA A 1 3 ? -12.381 13.872 14.989 1.00 5.76 ? 3 DA A N1 1 ATOM 57 C C2 . DA A 1 3 ? -11.080 13.794 15.237 1.00 10.84 ? 3 DA A C2 1 ATOM 58 N N3 . DA A 1 3 ? -10.350 14.877 15.454 1.00 11.86 ? 3 DA A N3 1 ATOM 59 C C4 . DA A 1 3 ? -10.991 16.055 15.433 1.00 12.98 ? 3 DA A C4 1 ATOM 60 P P . DT A 1 4 ? -5.397 17.904 13.826 1.00 17.51 ? 4 DT A P 1 ATOM 61 O OP1 . DT A 1 4 ? -3.858 17.854 14.090 1.00 21.02 ? 4 DT A OP1 1 ATOM 62 O OP2 . DT A 1 4 ? -5.674 18.965 12.810 1.00 21.97 ? 4 DT A OP2 1 ATOM 63 O "O5'" . DT A 1 4 ? -6.150 16.687 13.292 1.00 18.91 ? 4 DT A "O5'" 1 ATOM 64 C "C5'" . DT A 1 4 ? -6.217 15.448 14.016 1.00 23.53 ? 4 DT A "C5'" 1 ATOM 65 C "C4'" . DT A 1 4 ? -6.514 14.278 13.122 1.00 17.44 ? 4 DT A "C4'" 1 ATOM 66 O "O4'" . DT A 1 4 ? -7.893 14.029 13.054 1.00 21.32 ? 4 DT A "O4'" 1 ATOM 67 C "C3'" . DT A 1 4 ? -6.060 14.340 11.663 1.00 17.72 ? 4 DT A "C3'" 1 ATOM 68 O "O3'" . DT A 1 4 ? -5.624 13.011 11.282 1.00 19.94 ? 4 DT A "O3'" 1 ATOM 69 C "C2'" . DT A 1 4 ? -7.345 14.695 10.934 1.00 13.67 ? 4 DT A "C2'" 1 ATOM 70 C "C1'" . DT A 1 4 ? -8.358 13.777 11.695 1.00 16.63 ? 4 DT A "C1'" 1 ATOM 71 N N1 . DT A 1 4 ? -9.695 14.387 11.631 1.00 15.46 ? 4 DT A N1 1 ATOM 72 C C2 . DT A 1 4 ? -10.856 13.657 11.631 1.00 10.43 ? 4 DT A C2 1 ATOM 73 O O2 . DT A 1 4 ? -11.083 12.482 11.579 1.00 21.45 ? 4 DT A O2 1 ATOM 74 N N3 . DT A 1 4 ? -12.003 14.343 11.663 1.00 14.05 ? 4 DT A N3 1 ATOM 75 C C4 . DT A 1 4 ? -12.015 15.697 11.727 1.00 12.17 ? 4 DT A C4 1 ATOM 76 O O4 . DT A 1 4 ? -13.181 16.200 11.753 1.00 13.54 ? 4 DT A O4 1 ATOM 77 C C5 . DT A 1 4 ? -10.828 16.466 11.774 1.00 13.56 ? 4 DT A C5 1 ATOM 78 C C7 . DT A 1 4 ? -10.865 17.960 11.838 1.00 11.81 ? 4 DT A C7 1 ATOM 79 C C6 . DT A 1 4 ? -9.712 15.786 11.748 1.00 10.76 ? 4 DT A C6 1 ATOM 80 P P . DC A 1 5 ? -4.592 12.854 10.040 1.00 19.54 ? 5 DC A P 1 ATOM 81 O OP1 . DC A 1 5 ? -4.110 11.491 10.257 1.00 16.66 ? 5 DC A OP1 1 ATOM 82 O OP2 . DC A 1 5 ? -4.091 14.267 10.024 1.00 22.88 ? 5 DC A OP2 1 ATOM 83 O "O5'" . DC A 1 5 ? -5.492 12.725 8.713 1.00 22.73 ? 5 DC A "O5'" 1 ATOM 84 C "C5'" . DC A 1 5 ? -5.582 11.385 8.184 1.00 21.14 ? 5 DC A "C5'" 1 ATOM 85 C "C4'" . DC A 1 5 ? -7.006 11.354 7.724 1.00 15.19 ? 5 DC A "C4'" 1 ATOM 86 O "O4'" . DC A 1 5 ? -7.904 12.082 8.512 1.00 19.73 ? 5 DC A "O4'" 1 ATOM 87 C "C3'" . DC A 1 5 ? -7.289 11.819 6.313 1.00 13.56 ? 5 DC A "C3'" 1 ATOM 88 O "O3'" . DC A 1 5 ? -7.941 10.644 5.689 1.00 18.23 ? 5 DC A "O3'" 1 ATOM 89 C "C2'" . DC A 1 5 ? -8.304 12.921 6.413 1.00 15.85 ? 5 DC A "C2'" 1 ATOM 90 C "C1'" . DC A 1 5 ? -9.001 12.689 7.761 1.00 14.82 ? 5 DC A "C1'" 1 ATOM 91 N N1 . DC A 1 5 ? -9.827 13.895 8.036 1.00 10.26 ? 5 DC A N1 1 ATOM 92 C C2 . DC A 1 5 ? -11.234 13.822 8.116 1.00 5.49 ? 5 DC A C2 1 ATOM 93 O O2 . DC A 1 5 ? -11.905 12.767 8.105 1.00 14.31 ? 5 DC A O2 1 ATOM 94 N N3 . DC A 1 5 ? -11.942 14.969 8.306 1.00 10.40 ? 5 DC A N3 1 ATOM 95 C C4 . DC A 1 5 ? -11.343 16.147 8.343 1.00 5.32 ? 5 DC A C4 1 ATOM 96 N N4 . DC A 1 5 ? -11.942 17.348 8.496 1.00 10.77 ? 5 DC A N4 1 ATOM 97 C C5 . DC A 1 5 ? -9.930 16.228 8.221 1.00 11.30 ? 5 DC A C5 1 ATOM 98 C C6 . DC A 1 5 ? -9.247 15.104 8.005 1.00 9.80 ? 5 DC A C6 1 ATOM 99 P P . DG A 1 6 ? -6.975 9.994 4.589 1.00 14.85 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? -6.074 9.253 5.440 1.00 20.41 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? -6.701 10.795 3.484 1.00 19.56 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? -8.013 9.057 3.981 1.00 12.03 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? -9.270 8.926 4.711 1.00 18.00 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? -9.997 8.187 3.606 1.00 12.50 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? -10.954 8.998 2.987 1.00 16.23 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? -9.105 7.653 2.464 1.00 16.51 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? -9.720 6.475 1.893 1.00 18.28 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? -9.194 8.710 1.385 1.00 13.54 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? -10.593 9.228 1.623 1.00 6.98 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? -10.616 10.691 1.539 1.00 7.48 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? -9.533 11.575 1.570 1.00 6.52 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? -9.874 12.823 1.570 1.00 4.24 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? -11.262 12.818 1.554 1.00 6.57 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? -12.236 13.819 1.523 1.00 4.06 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? -12.037 15.050 1.512 1.00 9.11 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? -13.576 13.349 1.523 1.00 11.50 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? -13.853 12.043 1.517 1.00 3.53 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? -15.090 11.463 1.507 1.00 6.86 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? -12.960 11.021 1.565 1.00 7.72 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? -11.693 11.494 1.565 1.00 6.27 ? 6 DG A C4 1 HETATM 121 C C1 . DM1 B 2 . ? -12.667 18.363 4.959 1.00 12.73 ? 7 DM1 A C1 1 HETATM 122 C C2 . DM1 B 2 . ? -11.469 19.122 4.927 1.00 12.67 ? 7 DM1 A C2 1 HETATM 123 C C3 . DM1 B 2 . ? -10.179 18.481 4.848 1.00 12.75 ? 7 DM1 A C3 1 HETATM 124 C C4 . DM1 B 2 . ? -10.196 17.096 4.790 1.00 13.11 ? 7 DM1 A C4 1 HETATM 125 O O4 . DM1 B 2 . ? -9.040 16.449 4.758 1.00 15.64 ? 7 DM1 A O4 1 HETATM 126 C C5 . DM1 B 2 . ? -11.421 16.360 4.832 1.00 12.38 ? 7 DM1 A C5 1 HETATM 127 C C6 . DM1 B 2 . ? -11.421 14.950 4.790 1.00 12.54 ? 7 DM1 A C6 1 HETATM 128 O O6 . DM1 B 2 . ? -10.232 14.264 4.700 1.00 15.10 ? 7 DM1 A O6 1 HETATM 129 C C7 . DM1 B 2 . ? -12.611 14.214 4.816 1.00 10.91 ? 7 DM1 A C7 1 HETATM 130 C C8 . DM1 B 2 . ? -12.639 12.801 4.779 1.00 10.43 ? 7 DM1 A C8 1 HETATM 131 O O8 . DM1 B 2 . ? -11.410 12.101 4.705 1.00 18.94 ? 7 DM1 A O8 1 HETATM 132 C C9 . DM1 B 2 . ? -13.850 12.079 4.859 1.00 14.70 ? 7 DM1 A C9 1 HETATM 133 C C10 . DM1 B 2 . ? -13.761 10.590 4.790 1.00 18.19 ? 7 DM1 A C10 1 HETATM 134 O O10 . DM1 B 2 . ? -13.030 10.112 5.911 1.00 18.87 ? 7 DM1 A O10 1 HETATM 135 C C11 . DM1 B 2 . ? -15.126 9.855 4.742 1.00 16.52 ? 7 DM1 A C11 1 HETATM 136 C C12 . DM1 B 2 . ? -16.270 10.669 5.483 1.00 17.42 ? 7 DM1 A C12 1 HETATM 137 O O12 . DM1 B 2 . ? -15.996 10.490 6.873 1.00 15.66 ? 7 DM1 A O12 1 HETATM 138 C C13 . DM1 B 2 . ? -17.605 9.958 5.266 1.00 18.95 ? 7 DM1 A C13 1 HETATM 139 O O13 . DM1 B 2 . ? -18.030 10.104 4.013 1.00 18.71 ? 7 DM1 A O13 1 HETATM 140 C C14 . DM1 B 2 . ? -18.075 8.623 5.826 1.00 19.75 ? 7 DM1 A C14 1 HETATM 141 C C15 . DM1 B 2 . ? -16.352 12.118 4.949 1.00 16.32 ? 7 DM1 A C15 1 HETATM 142 C C16 . DM1 B 2 . ? -14.997 12.759 4.970 1.00 16.41 ? 7 DM1 A C16 1 HETATM 143 C C17 . DM1 B 2 . ? -15.036 14.177 4.964 1.00 12.31 ? 7 DM1 A C17 1 HETATM 144 O O17 . DM1 B 2 . ? -16.228 14.785 5.049 1.00 14.72 ? 7 DM1 A O17 1 HETATM 145 C C18 . DM1 B 2 . ? -13.850 14.888 4.912 1.00 13.47 ? 7 DM1 A C18 1 HETATM 146 C C19 . DM1 B 2 . ? -13.853 16.343 4.970 1.00 12.25 ? 7 DM1 A C19 1 HETATM 147 O O19 . DM1 B 2 . ? -14.961 16.875 5.033 1.00 16.51 ? 7 DM1 A O19 1 HETATM 148 C C20 . DM1 B 2 . ? -12.613 16.981 4.927 1.00 12.07 ? 7 DM1 A C20 1 HETATM 149 C C21 . DM1 B 2 . ? -7.703 17.037 4.716 1.00 16.58 ? 7 DM1 A C21 1 HETATM 150 C "C1'" . DM1 B 2 . ? -12.090 9.253 6.307 1.00 18.06 ? 7 DM1 A "C1'" 1 HETATM 151 C "C2'" . DM1 B 2 . ? -11.240 9.720 7.508 1.00 21.89 ? 7 DM1 A "C2'" 1 HETATM 152 C "C3'" . DM1 B 2 . ? -12.286 9.846 8.697 1.00 23.51 ? 7 DM1 A "C3'" 1 HETATM 153 N "N3'" . DM1 B 2 . ? -11.696 10.344 9.903 1.00 21.68 ? 7 DM1 A "N3'" 1 HETATM 154 C "C4'" . DM1 B 2 . ? -13.055 8.450 8.956 1.00 26.18 ? 7 DM1 A "C4'" 1 HETATM 155 O "O4'" . DM1 B 2 . ? -12.015 7.465 9.347 1.00 23.29 ? 7 DM1 A "O4'" 1 HETATM 156 C "C5'" . DM1 B 2 . ? -12.812 7.585 7.566 1.00 25.34 ? 7 DM1 A "C5'" 1 HETATM 157 O "O5'" . DM1 B 2 . ? -12.846 8.039 6.403 1.00 23.07 ? 7 DM1 A "O5'" 1 HETATM 158 C "C6'" . DM1 B 2 . ? -14.267 6.866 7.856 1.00 18.53 ? 7 DM1 A "C6'" 1 #