HEADER DNA 17-OCT-92 1DA0 TITLE DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) COMPLEXED TITLE 2 WITH DAUNOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*GP*AP*TP*CP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES KEYWDS RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.H.MOORE,W.N.HUNTER,B.LANGLOIS D'ESTAINTOT,O.KENNARD REVDAT 4 07-FEB-24 1DA0 1 REMARK REVDAT 3 24-FEB-09 1DA0 1 VERSN REVDAT 2 01-APR-03 1DA0 1 JRNL REVDAT 1 15-JUL-93 1DA0 0 JRNL AUTH M.H.MOORE,W.N.HUNTER,B.L.D'ESTAINTOT,O.KENNARD JRNL TITL DNA-DRUG INTERACTIONS. THE CRYSTAL STRUCTURE OF D(CGATCG) JRNL TITL 2 COMPLEXED WITH DAUNOMYCIN. JRNL REF J.MOL.BIOL. V. 206 693 1989 JRNL REFN ISSN 0022-2836 JRNL PMID 2738914 JRNL DOI 10.1016/0022-2836(89)90577-9 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NUCLSQ REMARK 3 AUTHORS : WESTHOF,DUMAS,MORAS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 5.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 1845 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 120 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BOND DISTANCE (A) : NULL ; NULL REMARK 3 SUGAR-BASE BOND ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BONDS DISTANCE (A) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION CONTACT (A) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 SUGAR-BASE BONDS (A**2) : NULL ; NULL REMARK 3 SUGAR-BASE ANGLES (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BONDS (A**2) : NULL ; NULL REMARK 3 PHOSPHATE BOND ANGLE, H-BOND (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1DA0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000172695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 277.00 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : SYNTEX P21 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2801 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.50, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.43500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 13.99000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 13.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.21750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 13.99000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 13.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 39.65250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 13.99000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 13.99000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 13.21750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 13.99000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 13.99000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.65250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 26.43500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.43500 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N2 DG A 2 O2 DC A 5 8555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 O3' DG A 2 P -0.082 REMARK 500 DG A 2 C2 DG A 2 N3 0.058 REMARK 500 DG A 2 C8 DG A 2 N9 -0.056 REMARK 500 DG A 2 O3' DA A 3 P -0.127 REMARK 500 DA A 3 P DA A 3 OP1 0.143 REMARK 500 DT A 4 P DT A 4 O5' -0.066 REMARK 500 DG A 6 P DG A 6 O5' -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 C5' - C4' - O4' ANGL. DEV. = 14.8 DEGREES REMARK 500 DC A 1 C1' - O4' - C4' ANGL. DEV. = 6.5 DEGREES REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 6.9 DEGREES REMARK 500 DC A 1 C2 - N3 - C4 ANGL. DEV. = 3.4 DEGREES REMARK 500 DC A 1 C5 - C6 - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC A 1 N3 - C4 - N4 ANGL. DEV. = -5.7 DEGREES REMARK 500 DC A 1 C5 - C4 - N4 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG A 2 O3' - P - O5' ANGL. DEV. = 12.0 DEGREES REMARK 500 DG A 2 C3' - C2' - C1' ANGL. DEV. = -6.4 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 2 C6 - N1 - C2 ANGL. DEV. = -5.0 DEGREES REMARK 500 DG A 2 C5 - C6 - N1 ANGL. DEV. = 5.7 DEGREES REMARK 500 DG A 2 C8 - N9 - C4 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG A 2 C3' - O3' - P ANGL. DEV. = 14.3 DEGREES REMARK 500 DA A 3 O3' - P - OP1 ANGL. DEV. = 7.9 DEGREES REMARK 500 DA A 3 OP1 - P - OP2 ANGL. DEV. = -24.5 DEGREES REMARK 500 DA A 3 O5' - C5' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DA A 3 P - O5' - C5' ANGL. DEV. = 13.1 DEGREES REMARK 500 DA A 3 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DA A 3 C6 - N1 - C2 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA A 3 N1 - C2 - N3 ANGL. DEV. = -7.8 DEGREES REMARK 500 DA A 3 C2 - N3 - C4 ANGL. DEV. = 6.3 DEGREES REMARK 500 DA A 3 C4 - C5 - C6 ANGL. DEV. = -3.1 DEGREES REMARK 500 DA A 3 N1 - C6 - N6 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA A 3 C3' - O3' - P ANGL. DEV. = 14.0 DEGREES REMARK 500 DT A 4 OP1 - P - OP2 ANGL. DEV. = -10.9 DEGREES REMARK 500 DT A 4 O5' - P - OP1 ANGL. DEV. = 10.6 DEGREES REMARK 500 DT A 4 O4' - C1' - C2' ANGL. DEV. = -7.5 DEGREES REMARK 500 DT A 4 C2 - N3 - C4 ANGL. DEV. = -5.8 DEGREES REMARK 500 DT A 4 N3 - C4 - C5 ANGL. DEV. = 7.3 DEGREES REMARK 500 DT A 4 N1 - C2 - O2 ANGL. DEV. = 9.9 DEGREES REMARK 500 DT A 4 N3 - C2 - O2 ANGL. DEV. = -12.3 DEGREES REMARK 500 DT A 4 N3 - C4 - O4 ANGL. DEV. = -6.0 DEGREES REMARK 500 DC A 5 OP1 - P - OP2 ANGL. DEV. = 20.8 DEGREES REMARK 500 DC A 5 O5' - C5' - C4' ANGL. DEV. = -8.4 DEGREES REMARK 500 DC A 5 O4' - C1' - C2' ANGL. DEV. = -5.9 DEGREES REMARK 500 DC A 5 O4' - C1' - N1 ANGL. DEV. = 22.9 DEGREES REMARK 500 DC A 5 N1 - C2 - O2 ANGL. DEV. = 6.4 DEGREES REMARK 500 DC A 5 N3 - C2 - O2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DC A 5 N3 - C4 - N4 ANGL. DEV. = 8.5 DEGREES REMARK 500 DC A 5 C5 - C4 - N4 ANGL. DEV. = -6.6 DEGREES REMARK 500 DC A 5 C3' - O3' - P ANGL. DEV. = -9.5 DEGREES REMARK 500 DG A 6 OP1 - P - OP2 ANGL. DEV. = 10.2 DEGREES REMARK 500 DG A 6 O5' - P - OP2 ANGL. DEV. = -5.8 DEGREES REMARK 500 DG A 6 O5' - C5' - C4' ANGL. DEV. = -14.1 DEGREES REMARK 500 DG A 6 O4' - C1' - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 DG A 6 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG A 6 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG A 6 C4 - C5 - N7 ANGL. DEV. = -2.6 DEGREES REMARK 500 DG A 6 N9 - C4 - C5 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 53 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DM1 A 7 DBREF 1DA0 A 1 6 PDB 1DA0 1DA0 1 6 SEQRES 1 A 6 DC DG DA DT DC DG HET DM1 A 7 38 HETNAM DM1 DAUNOMYCIN HETSYN DM1 DAUNORUBICIN FORMUL 2 DM1 C27 H29 N O10 SITE 1 AC1 6 DC A 1 DG A 2 DA A 3 DT A 4 SITE 2 AC1 6 DC A 5 DG A 6 CRYST1 27.980 27.980 52.870 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035740 0.000000 0.000000 0.00000 SCALE2 0.000000 0.035740 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018914 0.00000 ATOM 1 O5' DC A 1 -18.629 20.437 23.173 1.00 14.14 O ATOM 2 C5' DC A 1 -17.960 21.455 23.982 1.00 8.69 C ATOM 3 C4' DC A 1 -16.550 21.147 24.288 1.00 13.82 C ATOM 4 O4' DC A 1 -16.116 20.036 25.050 1.00 20.49 O ATOM 5 C3' DC A 1 -15.711 21.005 22.967 1.00 17.46 C ATOM 6 O3' DC A 1 -14.653 21.903 23.199 1.00 18.23 O ATOM 7 C2' DC A 1 -15.403 19.516 22.919 1.00 21.24 C ATOM 8 C1' DC A 1 -15.266 19.085 24.384 1.00 14.09 C ATOM 9 N1 DC A 1 -15.663 17.672 24.537 1.00 12.05 N ATOM 10 C2 DC A 1 -14.712 16.707 24.680 1.00 4.87 C ATOM 11 O2 DC A 1 -13.514 16.987 24.711 1.00 11.19 O ATOM 12 N3 DC A 1 -15.179 15.392 24.748 1.00 4.72 N ATOM 13 C4 DC A 1 -16.472 15.073 24.717 1.00 1.77 C ATOM 14 N4 DC A 1 -16.668 13.777 24.801 1.00 8.34 N ATOM 15 C5 DC A 1 -17.460 16.058 24.627 1.00 8.00 C ATOM 16 C6 DC A 1 -17.012 17.311 24.537 1.00 6.94 C ATOM 17 P DG A 2 -14.029 22.776 22.116 1.00 20.08 P ATOM 18 OP1 DG A 2 -13.053 23.495 23.035 1.00 20.87 O ATOM 19 OP2 DG A 2 -15.221 23.679 21.629 1.00 25.95 O ATOM 20 O5' DG A 2 -13.299 22.026 20.979 1.00 19.12 O ATOM 21 C5' DG A 2 -12.015 21.352 21.243 1.00 12.41 C ATOM 22 C4' DG A 2 -11.743 20.467 20.048 1.00 14.68 C ATOM 23 O4' DG A 2 -12.569 19.309 20.069 1.00 13.38 O ATOM 24 C3' DG A 2 -11.950 21.175 18.695 1.00 9.37 C ATOM 25 O3' DG A 2 -10.845 20.999 17.833 1.00 17.12 O ATOM 26 C2' DG A 2 -13.260 20.493 18.166 1.00 10.88 C ATOM 27 C1' DG A 2 -12.958 19.130 18.711 1.00 13.06 C ATOM 28 N9 DG A 2 -14.203 18.363 18.610 1.00 11.11 N ATOM 29 C8 DG A 2 -15.439 18.811 18.520 1.00 9.82 C ATOM 30 N7 DG A 2 -16.296 17.851 18.351 1.00 11.29 N ATOM 31 C5 DG A 2 -15.540 16.679 18.309 1.00 10.56 C ATOM 32 C6 DG A 2 -15.873 15.294 18.161 1.00 7.53 C ATOM 33 O6 DG A 2 -17.015 14.841 18.066 1.00 7.69 O ATOM 34 N1 DG A 2 -14.835 14.396 18.166 1.00 10.01 N ATOM 35 C2 DG A 2 -13.559 14.832 18.319 1.00 3.01 C ATOM 36 N2 DG A 2 -12.577 13.856 18.272 1.00 4.22 N ATOM 37 N3 DG A 2 -13.162 16.150 18.425 1.00 8.25 N ATOM 38 C4 DG A 2 -14.194 17.006 18.415 1.00 6.34 C ATOM 39 P DA A 3 -10.042 21.914 16.992 1.00 17.10 P ATOM 40 OP1 DA A 3 -9.614 23.358 17.611 1.00 26.98 O ATOM 41 OP2 DA A 3 -10.730 22.488 15.776 1.00 21.98 O ATOM 42 O5' DA A 3 -8.713 21.069 16.665 1.00 14.71 O ATOM 43 C5' DA A 3 -7.700 20.437 17.479 1.00 18.49 C ATOM 44 C4' DA A 3 -7.566 19.052 16.850 1.00 13.46 C ATOM 45 O4' DA A 3 -8.886 18.514 16.998 1.00 19.10 O ATOM 46 C3' DA A 3 -7.317 19.116 15.348 1.00 9.72 C ATOM 47 O3' DA A 3 -6.066 18.470 15.094 1.00 18.44 O ATOM 48 C2' DA A 3 -8.453 18.335 14.708 1.00 14.74 C ATOM 49 C1' DA A 3 -9.071 17.613 15.893 1.00 14.51 C ATOM 50 N9 DA A 3 -10.476 17.339 15.618 1.00 14.85 N ATOM 51 C8 DA A 3 -11.522 18.207 15.528 1.00 11.82 C ATOM 52 N7 DA A 3 -12.655 17.613 15.274 1.00 10.78 N ATOM 53 C5 DA A 3 -12.348 16.256 15.221 1.00 8.04 C ATOM 54 C6 DA A 3 -13.069 15.076 14.994 1.00 9.80 C ATOM 55 N6 DA A 3 -14.365 14.975 14.793 1.00 9.68 N ATOM 56 N1 DA A 3 -12.381 13.872 14.989 1.00 5.76 N ATOM 57 C2 DA A 3 -11.080 13.794 15.237 1.00 10.84 C ATOM 58 N3 DA A 3 -10.350 14.877 15.454 1.00 11.86 N ATOM 59 C4 DA A 3 -10.991 16.055 15.433 1.00 12.98 C ATOM 60 P DT A 4 -5.397 17.904 13.826 1.00 17.51 P ATOM 61 OP1 DT A 4 -3.858 17.854 14.090 1.00 21.02 O ATOM 62 OP2 DT A 4 -5.674 18.965 12.810 1.00 21.97 O ATOM 63 O5' DT A 4 -6.150 16.687 13.292 1.00 18.91 O ATOM 64 C5' DT A 4 -6.217 15.448 14.016 1.00 23.53 C ATOM 65 C4' DT A 4 -6.514 14.278 13.122 1.00 17.44 C ATOM 66 O4' DT A 4 -7.893 14.029 13.054 1.00 21.32 O ATOM 67 C3' DT A 4 -6.060 14.340 11.663 1.00 17.72 C ATOM 68 O3' DT A 4 -5.624 13.011 11.282 1.00 19.94 O ATOM 69 C2' DT A 4 -7.345 14.695 10.934 1.00 13.67 C ATOM 70 C1' DT A 4 -8.358 13.777 11.695 1.00 16.63 C ATOM 71 N1 DT A 4 -9.695 14.387 11.631 1.00 15.46 N ATOM 72 C2 DT A 4 -10.856 13.657 11.631 1.00 10.43 C ATOM 73 O2 DT A 4 -11.083 12.482 11.579 1.00 21.45 O ATOM 74 N3 DT A 4 -12.003 14.343 11.663 1.00 14.05 N ATOM 75 C4 DT A 4 -12.015 15.697 11.727 1.00 12.17 C ATOM 76 O4 DT A 4 -13.181 16.200 11.753 1.00 13.54 O ATOM 77 C5 DT A 4 -10.828 16.466 11.774 1.00 13.56 C ATOM 78 C7 DT A 4 -10.865 17.960 11.838 1.00 11.81 C ATOM 79 C6 DT A 4 -9.712 15.786 11.748 1.00 10.76 C ATOM 80 P DC A 5 -4.592 12.854 10.040 1.00 19.54 P ATOM 81 OP1 DC A 5 -4.110 11.491 10.257 1.00 16.66 O ATOM 82 OP2 DC A 5 -4.091 14.267 10.024 1.00 22.88 O ATOM 83 O5' DC A 5 -5.492 12.725 8.713 1.00 22.73 O ATOM 84 C5' DC A 5 -5.582 11.385 8.184 1.00 21.14 C ATOM 85 C4' DC A 5 -7.006 11.354 7.724 1.00 15.19 C ATOM 86 O4' DC A 5 -7.904 12.082 8.512 1.00 19.73 O ATOM 87 C3' DC A 5 -7.289 11.819 6.313 1.00 13.56 C ATOM 88 O3' DC A 5 -7.941 10.644 5.689 1.00 18.23 O ATOM 89 C2' DC A 5 -8.304 12.921 6.413 1.00 15.85 C ATOM 90 C1' DC A 5 -9.001 12.689 7.761 1.00 14.82 C ATOM 91 N1 DC A 5 -9.827 13.895 8.036 1.00 10.26 N ATOM 92 C2 DC A 5 -11.234 13.822 8.116 1.00 5.49 C ATOM 93 O2 DC A 5 -11.905 12.767 8.105 1.00 14.31 O ATOM 94 N3 DC A 5 -11.942 14.969 8.306 1.00 10.40 N ATOM 95 C4 DC A 5 -11.343 16.147 8.343 1.00 5.32 C ATOM 96 N4 DC A 5 -11.942 17.348 8.496 1.00 10.77 N ATOM 97 C5 DC A 5 -9.930 16.228 8.221 1.00 11.30 C ATOM 98 C6 DC A 5 -9.247 15.104 8.005 1.00 9.80 C ATOM 99 P DG A 6 -6.975 9.994 4.589 1.00 14.85 P ATOM 100 OP1 DG A 6 -6.074 9.253 5.440 1.00 20.41 O ATOM 101 OP2 DG A 6 -6.701 10.795 3.484 1.00 19.56 O ATOM 102 O5' DG A 6 -8.013 9.057 3.981 1.00 12.03 O ATOM 103 C5' DG A 6 -9.270 8.926 4.711 1.00 18.00 C ATOM 104 C4' DG A 6 -9.997 8.187 3.606 1.00 12.50 C ATOM 105 O4' DG A 6 -10.954 8.998 2.987 1.00 16.23 O ATOM 106 C3' DG A 6 -9.105 7.653 2.464 1.00 16.51 C ATOM 107 O3' DG A 6 -9.720 6.475 1.893 1.00 18.28 O ATOM 108 C2' DG A 6 -9.194 8.710 1.385 1.00 13.54 C ATOM 109 C1' DG A 6 -10.593 9.228 1.623 1.00 6.98 C ATOM 110 N9 DG A 6 -10.616 10.691 1.539 1.00 7.48 N ATOM 111 C8 DG A 6 -9.533 11.575 1.570 1.00 6.52 C ATOM 112 N7 DG A 6 -9.874 12.823 1.570 1.00 4.24 N ATOM 113 C5 DG A 6 -11.262 12.818 1.554 1.00 6.57 C ATOM 114 C6 DG A 6 -12.236 13.819 1.523 1.00 4.06 C ATOM 115 O6 DG A 6 -12.037 15.050 1.512 1.00 9.11 O ATOM 116 N1 DG A 6 -13.576 13.349 1.523 1.00 11.50 N ATOM 117 C2 DG A 6 -13.853 12.043 1.517 1.00 3.53 C ATOM 118 N2 DG A 6 -15.090 11.463 1.507 1.00 6.86 N ATOM 119 N3 DG A 6 -12.960 11.021 1.565 1.00 7.72 N ATOM 120 C4 DG A 6 -11.693 11.494 1.565 1.00 6.27 C TER 121 DG A 6 HETATM 122 C1 DM1 A 7 -12.667 18.363 4.959 1.00 12.73 C HETATM 123 C2 DM1 A 7 -11.469 19.122 4.927 1.00 12.67 C HETATM 124 C3 DM1 A 7 -10.179 18.481 4.848 1.00 12.75 C HETATM 125 C4 DM1 A 7 -10.196 17.096 4.790 1.00 13.11 C HETATM 126 O4 DM1 A 7 -9.040 16.449 4.758 1.00 15.64 O HETATM 127 C5 DM1 A 7 -11.421 16.360 4.832 1.00 12.38 C HETATM 128 C6 DM1 A 7 -11.421 14.950 4.790 1.00 12.54 C HETATM 129 O6 DM1 A 7 -10.232 14.264 4.700 1.00 15.10 O HETATM 130 C7 DM1 A 7 -12.611 14.214 4.816 1.00 10.91 C HETATM 131 C8 DM1 A 7 -12.639 12.801 4.779 1.00 10.43 C HETATM 132 O8 DM1 A 7 -11.410 12.101 4.705 1.00 18.94 O HETATM 133 C9 DM1 A 7 -13.850 12.079 4.859 1.00 14.70 C HETATM 134 C10 DM1 A 7 -13.761 10.590 4.790 1.00 18.19 C HETATM 135 O10 DM1 A 7 -13.030 10.112 5.911 1.00 18.87 O HETATM 136 C11 DM1 A 7 -15.126 9.855 4.742 1.00 16.52 C HETATM 137 C12 DM1 A 7 -16.270 10.669 5.483 1.00 17.42 C HETATM 138 O12 DM1 A 7 -15.996 10.490 6.873 1.00 15.66 O HETATM 139 C13 DM1 A 7 -17.605 9.958 5.266 1.00 18.95 C HETATM 140 O13 DM1 A 7 -18.030 10.104 4.013 1.00 18.71 O HETATM 141 C14 DM1 A 7 -18.075 8.623 5.826 1.00 19.75 C HETATM 142 C15 DM1 A 7 -16.352 12.118 4.949 1.00 16.32 C HETATM 143 C16 DM1 A 7 -14.997 12.759 4.970 1.00 16.41 C HETATM 144 C17 DM1 A 7 -15.036 14.177 4.964 1.00 12.31 C HETATM 145 O17 DM1 A 7 -16.228 14.785 5.049 1.00 14.72 O HETATM 146 C18 DM1 A 7 -13.850 14.888 4.912 1.00 13.47 C HETATM 147 C19 DM1 A 7 -13.853 16.343 4.970 1.00 12.25 C HETATM 148 O19 DM1 A 7 -14.961 16.875 5.033 1.00 16.51 O HETATM 149 C20 DM1 A 7 -12.613 16.981 4.927 1.00 12.07 C HETATM 150 C21 DM1 A 7 -7.703 17.037 4.716 1.00 16.58 C HETATM 151 C1' DM1 A 7 -12.090 9.253 6.307 1.00 18.06 C HETATM 152 C2' DM1 A 7 -11.240 9.720 7.508 1.00 21.89 C HETATM 153 C3' DM1 A 7 -12.286 9.846 8.697 1.00 23.51 C HETATM 154 N3' DM1 A 7 -11.696 10.344 9.903 1.00 21.68 N HETATM 155 C4' DM1 A 7 -13.055 8.450 8.956 1.00 26.18 C HETATM 156 O4' DM1 A 7 -12.015 7.465 9.347 1.00 23.29 O HETATM 157 C5' DM1 A 7 -12.812 7.585 7.566 1.00 25.34 C HETATM 158 O5' DM1 A 7 -12.846 8.039 6.403 1.00 23.07 O HETATM 159 C6' DM1 A 7 -14.267 6.866 7.856 1.00 18.53 C CONECT 122 123 149 CONECT 123 122 124 CONECT 124 123 125 CONECT 125 124 126 127 CONECT 126 125 150 CONECT 127 125 128 149 CONECT 128 127 129 130 CONECT 129 128 CONECT 130 128 131 146 CONECT 131 130 132 133 CONECT 132 131 CONECT 133 131 134 143 CONECT 134 133 135 136 CONECT 135 134 151 CONECT 136 134 137 CONECT 137 136 138 139 142 CONECT 138 137 CONECT 139 137 140 141 CONECT 140 139 CONECT 141 139 CONECT 142 137 143 CONECT 143 133 142 144 CONECT 144 143 145 146 CONECT 145 144 CONECT 146 130 144 147 CONECT 147 146 148 149 CONECT 148 147 CONECT 149 122 127 147 CONECT 150 126 CONECT 151 135 152 158 CONECT 152 151 153 CONECT 153 152 154 155 CONECT 154 153 CONECT 155 153 156 157 CONECT 156 155 CONECT 157 155 158 159 CONECT 158 151 157 CONECT 159 157 MASTER 324 0 1 0 0 0 2 6 158 1 38 1 END