14.14 -18.629 20.437 23.173 A O5' DC 1 ATOM A O5' DC 1 1 1.00 1 O 8.69 -17.960 21.455 23.982 A C5' DC 1 ATOM A C5' DC 1 1 1.00 1 C 13.82 -16.550 21.147 24.288 A C4' DC 1 ATOM A C4' DC 1 1 1.00 1 C 20.49 -16.116 20.036 25.050 A O4' DC 1 ATOM A O4' DC 1 1 1.00 1 O 17.46 -15.711 21.005 22.967 A C3' DC 1 ATOM A C3' DC 1 1 1.00 1 C 18.23 -14.653 21.903 23.199 A O3' DC 1 ATOM A O3' DC 1 1 1.00 1 O 21.24 -15.403 19.516 22.919 A C2' DC 1 ATOM A C2' DC 1 1 1.00 1 C 14.09 -15.266 19.085 24.384 A C1' DC 1 ATOM A C1' DC 1 1 1.00 1 C 12.05 -15.663 17.672 24.537 A N1 DC 1 ATOM A N1 DC 1 1 1.00 1 N 4.87 -14.712 16.707 24.680 A C2 DC 1 ATOM A C2 DC 1 1 1.00 1 C 11.19 -13.514 16.987 24.711 A O2 DC 1 ATOM A O2 DC 1 1 1.00 1 O 4.72 -15.179 15.392 24.748 A N3 DC 1 ATOM A N3 DC 1 1 1.00 1 N 1.77 -16.472 15.073 24.717 A C4 DC 1 ATOM A C4 DC 1 1 1.00 1 C 8.34 -16.668 13.777 24.801 A N4 DC 1 ATOM A N4 DC 1 1 1.00 1 N 8.00 -17.460 16.058 24.627 A C5 DC 1 ATOM A C5 DC 1 1 1.00 1 C 6.94 -17.012 17.311 24.537 A C6 DC 1 ATOM A C6 DC 1 1 1.00 1 C 20.08 -14.029 22.776 22.116 A P DG 2 ATOM A P DG 1 2 1.00 1 P 20.87 -13.053 23.495 23.035 A OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 25.95 -15.221 23.679 21.629 A OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 19.12 -13.299 22.026 20.979 A O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 12.41 -12.015 21.352 21.243 A C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 14.68 -11.743 20.467 20.048 A C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 13.38 -12.569 19.309 20.069 A O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 9.37 -11.950 21.175 18.695 A C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 17.12 -10.845 20.999 17.833 A O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 10.88 -13.260 20.493 18.166 A C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 13.06 -12.958 19.130 18.711 A C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 11.11 -14.203 18.363 18.610 A N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 9.82 -15.439 18.811 18.520 A C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 11.29 -16.296 17.851 18.351 A N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 10.56 -15.540 16.679 18.309 A C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 7.53 -15.873 15.294 18.161 A C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 7.69 -17.015 14.841 18.066 A O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 10.01 -14.835 14.396 18.166 A N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 3.01 -13.559 14.832 18.319 A C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 4.22 -12.577 13.856 18.272 A N2 DG 2 ATOM A N2 DG 1 2 1.00 1 N 8.25 -13.162 16.150 18.425 A N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 6.34 -14.194 17.006 18.415 A C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 17.10 -10.042 21.914 16.992 A P DA 3 ATOM A P DA 1 3 1.00 1 P 26.98 -9.614 23.358 17.611 A OP1 DA 3 ATOM A OP1 DA 1 3 1.00 1 O 21.98 -10.730 22.488 15.776 A OP2 DA 3 ATOM A OP2 DA 1 3 1.00 1 O 14.71 -8.713 21.069 16.665 A O5' DA 3 ATOM A O5' DA 1 3 1.00 1 O 18.49 -7.700 20.437 17.479 A C5' DA 3 ATOM A C5' DA 1 3 1.00 1 C 13.46 -7.566 19.052 16.850 A C4' DA 3 ATOM A C4' DA 1 3 1.00 1 C 19.10 -8.886 18.514 16.998 A O4' DA 3 ATOM A O4' DA 1 3 1.00 1 O 9.72 -7.317 19.116 15.348 A C3' DA 3 ATOM A C3' DA 1 3 1.00 1 C 18.44 -6.066 18.470 15.094 A O3' DA 3 ATOM A O3' DA 1 3 1.00 1 O 14.74 -8.453 18.335 14.708 A C2' DA 3 ATOM A C2' DA 1 3 1.00 1 C 14.51 -9.071 17.613 15.893 A C1' DA 3 ATOM A C1' DA 1 3 1.00 1 C 14.85 -10.476 17.339 15.618 A N9 DA 3 ATOM A N9 DA 1 3 1.00 1 N 11.82 -11.522 18.207 15.528 A C8 DA 3 ATOM A C8 DA 1 3 1.00 1 C 10.78 -12.655 17.613 15.274 A N7 DA 3 ATOM A N7 DA 1 3 1.00 1 N 8.04 -12.348 16.256 15.221 A C5 DA 3 ATOM A C5 DA 1 3 1.00 1 C 9.80 -13.069 15.076 14.994 A C6 DA 3 ATOM A C6 DA 1 3 1.00 1 C 9.68 -14.365 14.975 14.793 A N6 DA 3 ATOM A N6 DA 1 3 1.00 1 N 5.76 -12.381 13.872 14.989 A N1 DA 3 ATOM A N1 DA 1 3 1.00 1 N 10.84 -11.080 13.794 15.237 A C2 DA 3 ATOM A C2 DA 1 3 1.00 1 C 11.86 -10.350 14.877 15.454 A N3 DA 3 ATOM A N3 DA 1 3 1.00 1 N 12.98 -10.991 16.055 15.433 A C4 DA 3 ATOM A C4 DA 1 3 1.00 1 C 17.51 -5.397 17.904 13.826 A P DT 4 ATOM A P DT 1 4 1.00 1 P 21.02 -3.858 17.854 14.090 A OP1 DT 4 ATOM A OP1 DT 1 4 1.00 1 O 21.97 -5.674 18.965 12.810 A OP2 DT 4 ATOM A OP2 DT 1 4 1.00 1 O 18.91 -6.150 16.687 13.292 A O5' DT 4 ATOM A O5' DT 1 4 1.00 1 O 23.53 -6.217 15.448 14.016 A C5' DT 4 ATOM A C5' DT 1 4 1.00 1 C 17.44 -6.514 14.278 13.122 A C4' DT 4 ATOM A C4' DT 1 4 1.00 1 C 21.32 -7.893 14.029 13.054 A O4' DT 4 ATOM A O4' DT 1 4 1.00 1 O 17.72 -6.060 14.340 11.663 A C3' DT 4 ATOM A C3' DT 1 4 1.00 1 C 19.94 -5.624 13.011 11.282 A O3' DT 4 ATOM A O3' DT 1 4 1.00 1 O 13.67 -7.345 14.695 10.934 A C2' DT 4 ATOM A C2' DT 1 4 1.00 1 C 16.63 -8.358 13.777 11.695 A C1' DT 4 ATOM A C1' DT 1 4 1.00 1 C 15.46 -9.695 14.387 11.631 A N1 DT 4 ATOM A N1 DT 1 4 1.00 1 N 10.43 -10.856 13.657 11.631 A C2 DT 4 ATOM A C2 DT 1 4 1.00 1 C 21.45 -11.083 12.482 11.579 A O2 DT 4 ATOM A O2 DT 1 4 1.00 1 O 14.05 -12.003 14.343 11.663 A N3 DT 4 ATOM A N3 DT 1 4 1.00 1 N 12.17 -12.015 15.697 11.727 A C4 DT 4 ATOM A C4 DT 1 4 1.00 1 C 13.54 -13.181 16.200 11.753 A O4 DT 4 ATOM A O4 DT 1 4 1.00 1 O 13.56 -10.828 16.466 11.774 A C5 DT 4 ATOM A C5 DT 1 4 1.00 1 C 11.81 -10.865 17.960 11.838 A C7 DT 4 ATOM A C7 DT 1 4 1.00 1 C 10.76 -9.712 15.786 11.748 A C6 DT 4 ATOM A C6 DT 1 4 1.00 1 C 19.54 -4.592 12.854 10.040 A P DC 5 ATOM A P DC 1 5 1.00 1 P 16.66 -4.110 11.491 10.257 A OP1 DC 5 ATOM A OP1 DC 1 5 1.00 1 O 22.88 -4.091 14.267 10.024 A OP2 DC 5 ATOM A OP2 DC 1 5 1.00 1 O 22.73 -5.492 12.725 8.713 A O5' DC 5 ATOM A O5' DC 1 5 1.00 1 O 21.14 -5.582 11.385 8.184 A C5' DC 5 ATOM A C5' DC 1 5 1.00 1 C 15.19 -7.006 11.354 7.724 A C4' DC 5 ATOM A C4' DC 1 5 1.00 1 C 19.73 -7.904 12.082 8.512 A O4' DC 5 ATOM A O4' DC 1 5 1.00 1 O 13.56 -7.289 11.819 6.313 A C3' DC 5 ATOM A C3' DC 1 5 1.00 1 C 18.23 -7.941 10.644 5.689 A O3' DC 5 ATOM A O3' DC 1 5 1.00 1 O 15.85 -8.304 12.921 6.413 A C2' DC 5 ATOM A C2' DC 1 5 1.00 1 C 14.82 -9.001 12.689 7.761 A C1' DC 5 ATOM A C1' DC 1 5 1.00 1 C 10.26 -9.827 13.895 8.036 A N1 DC 5 ATOM A N1 DC 1 5 1.00 1 N 5.49 -11.234 13.822 8.116 A C2 DC 5 ATOM A C2 DC 1 5 1.00 1 C 14.31 -11.905 12.767 8.105 A O2 DC 5 ATOM A O2 DC 1 5 1.00 1 O 10.40 -11.942 14.969 8.306 A N3 DC 5 ATOM A N3 DC 1 5 1.00 1 N 5.32 -11.343 16.147 8.343 A C4 DC 5 ATOM A C4 DC 1 5 1.00 1 C 10.77 -11.942 17.348 8.496 A N4 DC 5 ATOM A N4 DC 1 5 1.00 1 N 11.30 -9.930 16.228 8.221 A C5 DC 5 ATOM A C5 DC 1 5 1.00 1 C 9.80 -9.247 15.104 8.005 A C6 DC 5 ATOM A C6 DC 1 5 1.00 1 C 14.85 -6.975 9.994 4.589 A P DG 6 ATOM A P DG 1 6 1.00 1 P 20.41 -6.074 9.253 5.440 A OP1 DG 6 ATOM A OP1 DG 1 6 1.00 1 O 19.56 -6.701 10.795 3.484 A OP2 DG 6 ATOM A OP2 DG 1 6 1.00 1 O 12.03 -8.013 9.057 3.981 A O5' DG 6 ATOM A O5' DG 1 6 1.00 1 O 18.00 -9.270 8.926 4.711 A C5' DG 6 ATOM A C5' DG 1 6 1.00 1 C 12.50 -9.997 8.187 3.606 A C4' DG 6 ATOM A C4' DG 1 6 1.00 1 C 16.23 -10.954 8.998 2.987 A O4' DG 6 ATOM A O4' DG 1 6 1.00 1 O 16.51 -9.105 7.653 2.464 A C3' DG 6 ATOM A C3' DG 1 6 1.00 1 C 18.28 -9.720 6.475 1.893 A O3' DG 6 ATOM A O3' DG 1 6 1.00 1 O 13.54 -9.194 8.710 1.385 A C2' DG 6 ATOM A C2' DG 1 6 1.00 1 C 6.98 -10.593 9.228 1.623 A C1' DG 6 ATOM A C1' DG 1 6 1.00 1 C 7.48 -10.616 10.691 1.539 A N9 DG 6 ATOM A N9 DG 1 6 1.00 1 N 6.52 -9.533 11.575 1.570 A C8 DG 6 ATOM A C8 DG 1 6 1.00 1 C 4.24 -9.874 12.823 1.570 A N7 DG 6 ATOM A N7 DG 1 6 1.00 1 N 6.57 -11.262 12.818 1.554 A C5 DG 6 ATOM A C5 DG 1 6 1.00 1 C 4.06 -12.236 13.819 1.523 A C6 DG 6 ATOM A C6 DG 1 6 1.00 1 C 9.11 -12.037 15.050 1.512 A O6 DG 6 ATOM A O6 DG 1 6 1.00 1 O 11.50 -13.576 13.349 1.523 A N1 DG 6 ATOM A N1 DG 1 6 1.00 1 N 3.53 -13.853 12.043 1.517 A C2 DG 6 ATOM A C2 DG 1 6 1.00 1 C 6.86 -15.090 11.463 1.507 A N2 DG 6 ATOM A N2 DG 1 6 1.00 1 N 7.72 -12.960 11.021 1.565 A N3 DG 6 ATOM A N3 DG 1 6 1.00 1 N 6.27 -11.693 11.494 1.565 A C4 DG 6 ATOM A C4 DG 1 6 1.00 1 C 12.73 -12.667 18.363 4.959 A C1 DM1 7 HETATM B C1 DM1 2 1.00 1 C 12.67 -11.469 19.122 4.927 A C2 DM1 7 HETATM B C2 DM1 2 1.00 1 C 12.75 -10.179 18.481 4.848 A C3 DM1 7 HETATM B C3 DM1 2 1.00 1 C 13.11 -10.196 17.096 4.790 A C4 DM1 7 HETATM B C4 DM1 2 1.00 1 C 15.64 -9.040 16.449 4.758 A O4 DM1 7 HETATM B O4 DM1 2 1.00 1 O 12.38 -11.421 16.360 4.832 A C5 DM1 7 HETATM B C5 DM1 2 1.00 1 C 12.54 -11.421 14.950 4.790 A C6 DM1 7 HETATM B C6 DM1 2 1.00 1 C 15.10 -10.232 14.264 4.700 A O6 DM1 7 HETATM B O6 DM1 2 1.00 1 O 10.91 -12.611 14.214 4.816 A C7 DM1 7 HETATM B C7 DM1 2 1.00 1 C 10.43 -12.639 12.801 4.779 A C8 DM1 7 HETATM B C8 DM1 2 1.00 1 C 18.94 -11.410 12.101 4.705 A O8 DM1 7 HETATM B O8 DM1 2 1.00 1 O 14.70 -13.850 12.079 4.859 A C9 DM1 7 HETATM B C9 DM1 2 1.00 1 C 18.19 -13.761 10.590 4.790 A C10 DM1 7 HETATM B C10 DM1 2 1.00 1 C 18.87 -13.030 10.112 5.911 A O10 DM1 7 HETATM B O10 DM1 2 1.00 1 O 16.52 -15.126 9.855 4.742 A C11 DM1 7 HETATM B C11 DM1 2 1.00 1 C 17.42 -16.270 10.669 5.483 A C12 DM1 7 HETATM B C12 DM1 2 1.00 1 C 15.66 -15.996 10.490 6.873 A O12 DM1 7 HETATM B O12 DM1 2 1.00 1 O 18.95 -17.605 9.958 5.266 A C13 DM1 7 HETATM B C13 DM1 2 1.00 1 C 18.71 -18.030 10.104 4.013 A O13 DM1 7 HETATM B O13 DM1 2 1.00 1 O 19.75 -18.075 8.623 5.826 A C14 DM1 7 HETATM B C14 DM1 2 1.00 1 C 16.32 -16.352 12.118 4.949 A C15 DM1 7 HETATM B C15 DM1 2 1.00 1 C 16.41 -14.997 12.759 4.970 A C16 DM1 7 HETATM B C16 DM1 2 1.00 1 C 12.31 -15.036 14.177 4.964 A C17 DM1 7 HETATM B C17 DM1 2 1.00 1 C 14.72 -16.228 14.785 5.049 A O17 DM1 7 HETATM B O17 DM1 2 1.00 1 O 13.47 -13.850 14.888 4.912 A C18 DM1 7 HETATM B C18 DM1 2 1.00 1 C 12.25 -13.853 16.343 4.970 A C19 DM1 7 HETATM B C19 DM1 2 1.00 1 C 16.51 -14.961 16.875 5.033 A O19 DM1 7 HETATM B O19 DM1 2 1.00 1 O 12.07 -12.613 16.981 4.927 A C20 DM1 7 HETATM B C20 DM1 2 1.00 1 C 16.58 -7.703 17.037 4.716 A C21 DM1 7 HETATM B C21 DM1 2 1.00 1 C 18.06 -12.090 9.253 6.307 A C1' DM1 7 HETATM B C1' DM1 2 1.00 1 C 21.89 -11.240 9.720 7.508 A C2' DM1 7 HETATM B C2' DM1 2 1.00 1 C 23.51 -12.286 9.846 8.697 A C3' DM1 7 HETATM B C3' DM1 2 1.00 1 C 21.68 -11.696 10.344 9.903 A N3' DM1 7 HETATM B N3' DM1 2 1.00 1 N 26.18 -13.055 8.450 8.956 A C4' DM1 7 HETATM B C4' DM1 2 1.00 1 C 23.29 -12.015 7.465 9.347 A O4' DM1 7 HETATM B O4' DM1 2 1.00 1 O 25.34 -12.812 7.585 7.566 A C5' DM1 7 HETATM B C5' DM1 2 1.00 1 C 23.07 -12.846 8.039 6.403 A O5' DM1 7 HETATM B O5' DM1 2 1.00 1 O 18.53 -14.267 6.866 7.856 A C6' DM1 7 HETATM B C6' DM1 2 1.00 1 C 0.035740 0.000000 0.000000 0.000000 0.035740 0.000000 0.000000 0.000000 0.018914 0.00000 0.00000 0.00000 Moore, M.H. Hunter, W.N. Langlois D'Estaintot, B. Kennard, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 27.980 27.980 52.870 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C27 H29 N O10 527.520 DAUNOMYCIN DAUNORUBICIN non-polymer C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H Y 108 N C Y 109 N C Y 110 N C Y 111 N C N 112 N O Y 113 N C N 114 N C N 115 N O Y 116 N C Y 117 N C N 118 N O Y 119 N C N 120 S C N 121 N O N 122 N C N 123 S C N 124 N O N 125 N C N 126 N O N 127 N C N 128 N C Y 129 N C Y 130 N C N 131 N O Y 132 N C N 133 N C N 134 N O Y 135 N C N 136 N C N 137 R C N 138 N C N 139 S C N 140 N N N 141 S C N 142 N O N 143 S C N 144 N O N 145 N C N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N O N 176 N P N 177 N O N 178 N O N 179 N O N 180 N C N 181 R C N 182 N O N 183 S C N 184 N O N 185 N C N 186 R C N 187 N N N 188 N C N 189 N O N 190 N N N 191 N C N 192 N O N 193 N C N 194 N C N 195 N C N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing Y 113 N doub Y 114 N sing N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N sing N 120 N sing Y 121 N sing N 122 N sing N 123 N sing Y 124 N doub N 125 N doub N 126 N sing Y 127 N doub Y 128 N sing N 129 N sing Y 130 N sing N 131 N sing N 132 N sing Y 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing Y 153 N sing N 154 N sing Y 155 N doub N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 206 693 705 10.1016/0022-2836(89)90577-9 2738914 DNA-drug interactions. The crystal structure of d(CGATCG) complexed with daunomycin. 1989 10.2210/pdb1da0/pdb pdb_00001da0 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 277.00 1 DIFFRACTOMETER SYNTEX P21 x-ray 1 1.0 1809.217 DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') 1 syn polymer 527.520 DAUNOMYCIN 1 syn non-polymer no no (DC)(DG)(DA)(DT)(DC)(DG) CGATCG A polydeoxyribonucleotide n n n n n n 2.86 56.99 VAPOR DIFFUSION 6.50 pH 6.50, VAPOR DIFFUSION, temperature 293.00K 293.00 WATER 1 MPD 1 MG ACETATE 1 SPERMINE_HCL 1 NA CACODYLATE 1 WATER 2 MPD 2 5.455 1 19 A 1 A 6 -2.537 A_DC1:DG6_A 1 0.849 0.080 -0.022 -0.467 -11.065 1 22 A 2 A 5 6.550 A_DG2:DC5_A 2 -0.030 0.014 -0.201 -0.398 -7.237 1 20 A 3 A 4 -3.874 A_DA3:DT4_A 3 -4.173 -0.601 -0.015 -0.443 7.237 1 20 A 4 A 3 -3.874 A_DT4:DA3_A 4 -4.173 0.601 -0.015 -0.443 11.065 1 22 A 5 A 2 6.550 A_DC5:DG2_A 5 -0.030 -0.014 -0.201 -0.398 -5.455 1 19 A 6 A 1 -2.537 A_DG6:DC1_A 6 0.849 -0.080 -0.022 -0.467 6.687 33.393 A A 1 2 -7.241 A A 6 5 6.901 -4.150 1.370 1.205 AA_DC1DG2:DC5DG6_AA 1 -0.454 0.791 33.139 3.530 -2.540 3.479 25.229 A A 2 3 -3.146 A A 5 4 3.316 -1.371 -1.788 0.199 AA_DG2DA3:DT4DC5_AA 2 -2.853 6.549 25.033 0.874 3.225 2.937 43.962 A A 3 4 8.073 A A 4 3 3.108 6.026 0.000 -1.107 AA_DA3DT4:DA3DT4_AA 3 0.000 0.000 43.567 -2.008 0.000 3.479 25.229 A A 4 5 -3.146 A A 3 2 3.316 -1.371 1.788 0.199 AA_DT4DC5:DG2DA3_AA 4 2.853 -6.549 25.033 0.874 -3.225 6.687 33.393 A A 5 6 -7.241 A A 2 1 6.901 -4.150 -1.370 1.205 AA_DC5DG6:DC1DG2_AA 5 0.454 -0.791 33.139 3.530 2.540 chem_comp_atom chem_comp_bond database_2 struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 1993-07-15 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id BNL Y NDB 1992-10-17 REL DM1 DAUNOMYCIN DM1 7 2 DM1 DM1 7 A C 1 n 1 DC 1 A G 2 n 2 DG 2 A A 3 n 3 DA 3 A T 4 n 4 DT 4 A C 5 n 5 DC 5 A G 6 n 6 DG 6 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_555 -y,-x,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 26.4350000000 1 A C5' DM1 7 WRONG HAND 1 14.85 1.10 109.80 124.65 A A A C5' C4' O4' DC DC DC 1 1 1 N 1 6.49 0.70 110.30 116.79 A A A C1' O4' C4' DC DC DC 1 1 1 N 1 6.91 0.30 108.30 115.21 A A A O4' C1' N1 DC DC DC 1 1 1 N 1 3.38 0.50 119.90 123.28 A A A C2 N3 C4 DC DC DC 1 1 1 N 1 3.57 0.50 121.00 124.57 A A A C5 C6 N1 DC DC DC 1 1 1 N 1 -5.69 0.70 118.00 112.31 A A A N3 C4 N4 DC DC DC 1 1 1 N 1 6.23 0.70 120.20 126.43 A A A C5 C4 N4 DC DC DC 1 1 1 N 1 11.98 1.90 104.00 115.98 A A A O3' P O5' DC DG DG 1 2 2 Y 1 -6.40 0.80 102.40 96.00 A A A C3' C2' C1' DG DG DG 2 2 2 N 1 3.02 0.30 108.30 111.32 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 -5.01 0.60 125.10 120.09 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 5.66 0.50 111.50 117.16 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 3.05 0.40 106.40 109.45 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 14.28 1.20 119.70 133.98 A A A C3' O3' P DG DG DA 2 2 3 Y 1 7.86 1.10 110.50 118.36 A A A O3' P OP1 DG DA DA 2 3 3 Y 1 -24.51 1.50 119.60 95.09 A A A OP1 P OP2 DA DA DA 3 3 3 N 1 -6.33 0.80 109.40 103.07 A A A O5' C5' C4' DA DA DA 3 3 3 N 1 13.08 1.60 120.90 133.98 A A A P O5' C5' DA DA DA 3 3 3 N 1 4.46 0.30 108.30 112.76 A A A O4' C1' N9 DA DA DA 3 3 3 N 1 3.87 0.60 118.60 122.47 A A A C6 N1 C2 DA DA DA 3 3 3 N 1 -7.75 0.50 129.30 121.55 A A A N1 C2 N3 DA DA DA 3 3 3 N 1 6.29 0.50 110.60 116.89 A A A C2 N3 C4 DA DA DA 3 3 3 N 1 -3.06 0.50 117.00 113.94 A A A C4 C5 C6 DA DA DA 3 3 3 N 1 -3.66 0.60 118.60 114.94 A A A N1 C6 N6 DA DA DA 3 3 3 N 1 14.04 1.20 119.70 133.74 A A A C3' O3' P DA DA DT 3 3 4 Y 1 -10.93 1.50 119.60 108.67 A A A OP1 P OP2 DT DT DT 4 4 4 N 1 10.58 1.20 110.70 121.28 A A A O5' P OP1 DT DT DT 4 4 4 N 1 -7.54 0.80 105.90 98.36 A A A O4' C1' C2' DT DT DT 4 4 4 N 1 -5.78 0.60 127.20 121.42 A A A C2 N3 C4 DT DT DT 4 4 4 N 1 7.28 0.60 115.20 122.48 A A A N3 C4 C5 DT DT DT 4 4 4 N 1 9.94 0.80 123.10 133.04 A A A N1 C2 O2 DT DT DT 4 4 4 N 1 -12.31 0.60 122.30 109.99 A A A N3 C2 O2 DT DT DT 4 4 4 N 1 -6.03 0.60 119.90 113.87 A A A N3 C4 O4 DT DT DT 4 4 4 N 1 20.76 1.50 119.60 140.36 A A A OP1 P OP2 DC DC DC 5 5 5 N 1 -8.38 0.80 109.40 101.02 A A A O5' C5' C4' DC DC DC 5 5 5 N 1 -5.93 0.80 105.90 99.97 A A A O4' C1' C2' DC DC DC 5 5 5 N 1 22.89 0.30 108.30 131.19 A A A O4' C1' N1 DC DC DC 5 5 5 N 1 6.43 0.60 118.90 125.33 A A A N1 C2 O2 DC DC DC 5 5 5 N 1 -6.24 0.70 121.90 115.66 A A A N3 C2 O2 DC DC DC 5 5 5 N 1 8.48 0.70 118.00 126.48 A A A N3 C4 N4 DC DC DC 5 5 5 N 1 -6.61 0.70 120.20 113.59 A A A C5 C4 N4 DC DC DC 5 5 5 N 1 -9.48 1.20 119.70 110.22 A A A C3' O3' P DC DC DG 5 5 6 Y 1 10.21 1.50 119.60 129.81 A A A OP1 P OP2 DG DG DG 6 6 6 N 1 -5.85 0.90 105.70 99.85 A A A O5' P OP2 DG DG DG 6 6 6 N 1 -14.11 0.80 109.40 95.29 A A A O5' C5' C4' DG DG DG 6 6 6 N 1 -5.80 0.70 108.00 102.20 A A A O4' C1' N9 DG DG DG 6 6 6 N 1 -3.80 0.60 125.10 121.30 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 3.38 0.50 111.50 114.88 A A A C5 C6 N1 DG DG DG 6 6 6 N 1 -2.57 0.40 110.80 108.23 A A A C4 C5 N7 DG DG DG 6 6 6 N 1 3.26 0.40 105.40 108.66 A A A N9 C4 C5 DG DG DG 6 6 6 N 1 3.61 0.60 130.40 134.01 A A A C6 C5 N7 DG DG DG 6 6 6 N 1 10.90 0.90 116.20 127.10 A A A N1 C2 N2 DG DG DG 6 6 6 N 1 -13.87 0.70 119.90 106.03 A A A N3 C2 N2 DG DG DG 6 6 6 N 1 A A O3' P DC DG 1 2 -0.082 0.012 1.607 1.525 Y 1 A A C2 N3 DG DG 2 2 0.058 0.008 1.323 1.381 N 1 A A C8 N9 DG DG 2 2 -0.056 0.007 1.374 1.318 N 1 A A O3' P DG DA 2 3 -0.127 0.012 1.607 1.480 Y 1 A A P OP1 DA DA 3 3 0.143 0.017 1.485 1.628 N 1 A A P O5' DT DT 4 4 -0.066 0.010 1.593 1.527 N 1 A A P O5' DG DG 6 6 -0.068 0.010 1.593 1.525 N 1 A A N2 O2 DG DC 2 5 1.96 1_555 8_555 0.2500000 1.500 10.000 1845 1 5.000 TR isotropic 1.500 10.000 0 158 38 120 0 fix 1.500 1DA0 3529 2801 2.000 0.0900000 1 refinement NUCLSQ DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) COMPLEXED WITH DAUNOMYCIN 1 N N 2 N N hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 A DG 6 A N1 DG 6 8_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 A DG 6 A O6 DG 6 8_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 A DG 6 A N2 DG 6 8_555 hydrog REVERSED WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 5 A O2 DC 5 8_555 hydrog REVERSED WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 5 A N3 DC 5 8_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 A DT 4 A N3 DT 4 8_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 A DT 4 A O4 DT 4 8_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 A DA 3 A N1 DA 3 8_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 A DA 3 A N6 DA 3 8_555 hydrog REVERSED WATSON-CRICK A DC 5 A N3 DC 5 1_555 A DG 2 A N2 DG 2 8_555 hydrog REVERSED WATSON-CRICK A DC 5 A O2 DC 5 1_555 A DG 2 A N1 DG 2 8_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 A DC 1 A N3 DC 1 8_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 A DC 1 A O2 DC 1 8_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 A DC 1 A N4 DC 1 8_555 DNA RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA 1DA0 PDB 1 1DA0 1 6 1DA0 1 6 1DA0 A 1 1 6 BINDING SITE FOR RESIDUE DM1 A 7 A DM1 7 Software 6 A DC 1 A DC 1 6 8_555 A DG 2 A DG 2 6 8_555 A DA 3 A DA 3 6 8_555 A DT 4 A DT 4 6 1_555 A DC 5 A DC 5 6 1_555 A DG 6 A DG 6 6 1_555 92 P 41 21 2