data_1DA9 # _entry.id 1DA9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1DA9 pdb_00001da9 10.2210/pdb1da9/pdb RCSB DDF040 ? ? WWPDB D_1000172701 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1993-04-15 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1DA9 _pdbx_database_status.recvd_initial_deposition_date 1993-01-21 _pdbx_database_status.deposit_site BNL _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Leonard, G.A.' 1 'Hambley, T.W.' 2 'McAuley-Hecht, K.' 3 'Brown, T.' 4 'Hunter, W.N.' 5 # _citation.id primary _citation.title ;Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes. ; _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 49 _citation.page_first 458 _citation.page_last 467 _citation.year 1993 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15299505 _citation.pdbx_database_id_DOI 10.1107/S090744499300527X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Leonard, G.A.' 1 ? primary 'Hambley, T.W.' 2 ? primary 'McAuley-Hecht, K.' 3 ? primary 'Brown, T.' 4 ? primary 'Hunter, W.N.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*GP*CP*CP*A)-3') ; 1809.218 1 ? ? ? ? 2 non-polymer syn DOXORUBICIN 543.519 1 ? ? ? ? 3 water nat water 18.015 43 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DG)(DC)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TGGCCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 DOXORUBICIN DM2 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DA n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DM2 non-polymer . DOXORUBICIN ADRIAMYCIN 'C27 H29 N O11' 543.519 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT T A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DC 4 4 4 DC C A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DA 6 6 6 DA A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DM2 1 7 7 DM2 DM2 A . C 3 HOH 1 8 8 HOH HOH A . C 3 HOH 2 9 9 HOH HOH A . C 3 HOH 3 10 10 HOH HOH A . C 3 HOH 4 11 11 HOH HOH A . C 3 HOH 5 12 12 HOH HOH A . C 3 HOH 6 13 13 HOH HOH A . C 3 HOH 7 14 14 HOH HOH A . C 3 HOH 8 15 15 HOH HOH A . C 3 HOH 9 16 16 HOH HOH A . C 3 HOH 10 17 17 HOH HOH A . C 3 HOH 11 18 18 HOH HOH A . C 3 HOH 12 19 19 HOH HOH A . C 3 HOH 13 20 20 HOH HOH A . C 3 HOH 14 21 21 HOH HOH A . C 3 HOH 15 22 22 HOH HOH A . C 3 HOH 16 23 23 HOH HOH A . C 3 HOH 17 24 24 HOH HOH A . C 3 HOH 18 25 25 HOH HOH A . C 3 HOH 19 26 26 HOH HOH A . C 3 HOH 20 27 27 HOH HOH A . C 3 HOH 21 28 28 HOH HOH A . C 3 HOH 22 29 29 HOH HOH A . C 3 HOH 23 30 30 HOH HOH A . C 3 HOH 24 31 31 HOH HOH A . C 3 HOH 25 32 32 HOH HOH A . C 3 HOH 26 33 33 HOH HOH A . C 3 HOH 27 34 34 HOH HOH A . C 3 HOH 28 35 35 HOH HOH A . C 3 HOH 29 36 36 HOH HOH A . C 3 HOH 30 37 37 HOH HOH A . C 3 HOH 31 38 38 HOH HOH A . C 3 HOH 32 39 39 HOH HOH A . C 3 HOH 33 40 40 HOH HOH A . C 3 HOH 34 41 41 HOH HOH A . C 3 HOH 35 42 42 HOH HOH A . C 3 HOH 36 43 43 HOH HOH A . C 3 HOH 37 44 44 HOH HOH A . C 3 HOH 38 45 45 HOH HOH A . C 3 HOH 39 46 46 HOH HOH A . C 3 HOH 40 47 47 HOH HOH A . C 3 HOH 41 48 48 HOH HOH A . C 3 HOH 42 49 49 HOH HOH A . C 3 HOH 43 50 50 HOH HOH A . # _software.name NUCLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _cell.entry_id 1DA9 _cell.length_a 28.010 _cell.length_b 28.010 _cell.length_c 52.990 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1DA9 _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # _exptl.entry_id 1DA9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_percent_sol 57.18 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.00 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.60 _exptl_crystal_grow.pdbx_details 'pH 6.60, VAPOR DIFFUSION, SITTING DROP, temperature 277.00K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 WATER ? ? ? 1 2 1 MPD ? ? ? 1 3 1 MGCL2 ? ? ? 1 4 1 SPERMINE_HCL ? ? ? 1 5 2 WATER ? ? ? 1 6 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details 'ROOM TEMPERATURE' _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'RIGAKU AFC-5R' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU200' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1DA9 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.000 _reflns.d_resolution_low ? _reflns.d_resolution_high 1.700 _reflns.number_obs 1475 _reflns.number_all 2433 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.0700000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1DA9 _refine.ls_number_reflns_obs 1475 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 7.000 _refine.ls_d_res_high 1.700 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.2160000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 120 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 43 _refine_hist.number_atoms_total 202 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 7.000 # _database_PDB_matrix.entry_id 1DA9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1DA9 _struct.title ;ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1DA9 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'RIGHT HANDED DNA, DOUBLE HELIX, COMPLEXED WITH DRUG, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1DA9 _struct_ref.pdbx_db_accession 1DA9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1DA9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1DA9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 26.4950000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 1 A DA 6 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 2 A DC 5 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 3 A DC 4 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 4 A DG 3 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 5 A DG 2 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 1 N3 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 1 O4 ? ? A DA 6 A DT 1 8_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A DM2 7 ? 10 'BINDING SITE FOR RESIDUE DM2 A 7' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 DT A 1 ? DT A 1 . ? 8_555 ? 2 AC1 10 DG A 2 ? DG A 2 . ? 8_555 ? 3 AC1 10 DG A 3 ? DG A 3 . ? 8_555 ? 4 AC1 10 DC A 5 ? DC A 5 . ? 1_555 ? 5 AC1 10 DA A 6 ? DA A 6 . ? 1_555 ? 6 AC1 10 HOH C . ? HOH A 20 . ? 1_555 ? 7 AC1 10 HOH C . ? HOH A 23 . ? 1_555 ? 8 AC1 10 HOH C . ? HOH A 28 . ? 1_555 ? 9 AC1 10 HOH C . ? HOH A 30 . ? 1_555 ? 10 AC1 10 HOH C . ? HOH A 31 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 41 ? ? O A HOH 50 ? ? 2.04 2 1 O A HOH 39 ? ? O A HOH 42 ? ? 2.18 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 18 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 38 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_444 _pdbx_validate_symm_contact.dist 2.09 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A DT 1 ? ? "C4'" A DT 1 ? ? 1.371 1.446 -0.075 0.010 N 2 1 N3 A DT 1 ? ? C4 A DT 1 ? ? 1.330 1.382 -0.052 0.008 N 3 1 N1 A DC 4 ? ? C6 A DC 4 ? ? 1.308 1.367 -0.059 0.006 N 4 1 C2 A DC 4 ? ? N3 A DC 4 ? ? 1.403 1.353 0.050 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C5'" A DT 1 ? ? "C4'" A DT 1 ? ? "O4'" A DT 1 ? ? 118.16 109.80 8.36 1.10 N 2 1 "C1'" A DT 1 ? ? "O4'" A DT 1 ? ? "C4'" A DT 1 ? ? 114.82 110.30 4.52 0.70 N 3 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? "C2'" A DT 1 ? ? 97.41 105.90 -8.49 0.80 N 4 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 102.94 108.00 -5.06 0.70 N 5 1 N3 A DT 1 ? ? C4 A DT 1 ? ? C5 A DT 1 ? ? 119.11 115.20 3.91 0.60 N 6 1 C5 A DT 1 ? ? C6 A DT 1 ? ? N1 A DT 1 ? ? 119.98 123.70 -3.72 0.60 N 7 1 C5 A DT 1 ? ? C4 A DT 1 ? ? O4 A DT 1 ? ? 119.16 124.90 -5.74 0.70 N 8 1 "C1'" A DG 2 ? ? "O4'" A DG 2 ? ? "C4'" A DG 2 ? ? 103.20 110.10 -6.90 1.00 N 9 1 "C3'" A DG 2 ? ? "C2'" A DG 2 ? ? "C1'" A DG 2 ? ? 97.41 102.40 -4.99 0.80 N 10 1 N1 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 113.16 119.90 -6.74 0.60 N 11 1 C5 A DG 2 ? ? C6 A DG 2 ? ? O6 A DG 2 ? ? 133.61 128.60 5.01 0.60 N 12 1 "O5'" A DG 3 ? ? "C5'" A DG 3 ? ? "C4'" A DG 3 ? ? 102.68 109.40 -6.72 0.80 N 13 1 C6 A DG 3 ? ? N1 A DG 3 ? ? C2 A DG 3 ? ? 120.57 125.10 -4.53 0.60 N 14 1 N1 A DG 3 ? ? C2 A DG 3 ? ? N3 A DG 3 ? ? 131.35 123.90 7.45 0.60 N 15 1 C2 A DG 3 ? ? N3 A DG 3 ? ? C4 A DG 3 ? ? 106.78 111.90 -5.12 0.50 N 16 1 N3 A DG 3 ? ? C2 A DG 3 ? ? N2 A DG 3 ? ? 113.69 119.90 -6.21 0.70 N 17 1 "O5'" A DC 4 ? ? "C5'" A DC 4 ? ? "C4'" A DC 4 ? ? 103.13 109.40 -6.27 0.80 N 18 1 C2 A DC 4 ? ? N3 A DC 4 ? ? C4 A DC 4 ? ? 116.13 119.90 -3.77 0.50 N 19 1 N3 A DC 4 ? ? C4 A DC 4 ? ? N4 A DC 4 ? ? 125.35 118.00 7.35 0.70 N 20 1 C5 A DC 4 ? ? C4 A DC 4 ? ? N4 A DC 4 ? ? 114.32 120.20 -5.88 0.70 N 21 1 "C3'" A DC 4 ? ? "O3'" A DC 4 ? ? P A DC 5 ? ? 131.66 119.70 11.96 1.20 Y 22 1 P A DC 5 ? ? "O5'" A DC 5 ? ? "C5'" A DC 5 ? ? 135.83 120.90 14.93 1.60 N 23 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 128.26 108.30 19.96 0.30 N 24 1 N1 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 126.67 118.90 7.77 0.60 N 25 1 N3 A DC 5 ? ? C2 A DC 5 ? ? O2 A DC 5 ? ? 115.01 121.90 -6.89 0.70 N 26 1 "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? "O4'" A DA 6 ? ? 116.96 109.80 7.16 1.10 N 27 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 102.88 108.00 -5.12 0.70 N 28 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 123.23 118.60 4.63 0.60 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _refine_B_iso.class _refine_B_iso.details _refine_B_iso.treatment _refine_B_iso.pdbx_refine_id 'ALL ATOMS' TR isotropic 'X-RAY DIFFRACTION' 'ALL WATERS' TR isotropic 'X-RAY DIFFRACTION' # loop_ _refine_occupancy.class _refine_occupancy.treatment _refine_occupancy.pdbx_refine_id 'ALL ATOMS' fix 'X-RAY DIFFRACTION' 'ALL WATERS' fix 'X-RAY DIFFRACTION' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DM2 C1 C Y N 108 DM2 C2 C Y N 109 DM2 C3 C Y N 110 DM2 C4 C Y N 111 DM2 O4 O N N 112 DM2 C5 C Y N 113 DM2 C6 C N N 114 DM2 O6 O N N 115 DM2 C7 C Y N 116 DM2 C8 C Y N 117 DM2 O8 O N N 118 DM2 C9 C Y N 119 DM2 C10 C N S 120 DM2 O10 O N N 121 DM2 C11 C N N 122 DM2 C12 C N S 123 DM2 O12 O N N 124 DM2 C13 C N N 125 DM2 O13 O N N 126 DM2 C14 C N N 127 DM2 O14 O N N 128 DM2 C15 C N N 129 DM2 C16 C Y N 130 DM2 C17 C Y N 131 DM2 O17 O N N 132 DM2 C18 C Y N 133 DM2 C19 C N N 134 DM2 O19 O N N 135 DM2 C20 C Y N 136 DM2 C21 C N N 137 DM2 "C1'" C N R 138 DM2 "C2'" C N N 139 DM2 "C3'" C N S 140 DM2 "N3'" N N N 141 DM2 "C4'" C N S 142 DM2 "O4'" O N N 143 DM2 "C5'" C N S 144 DM2 "O5'" O N N 145 DM2 "C6'" C N N 146 DM2 H1 H N N 147 DM2 H2 H N N 148 DM2 H3 H N N 149 DM2 HO8 H N N 150 DM2 H10 H N N 151 DM2 H111 H N N 152 DM2 H112 H N N 153 DM2 HO12 H N N 154 DM2 H141 H N N 155 DM2 H142 H N N 156 DM2 HO14 H N N 157 DM2 H151 H N N 158 DM2 H152 H N N 159 DM2 HO17 H N N 160 DM2 H211 H N N 161 DM2 H212 H N N 162 DM2 H213 H N N 163 DM2 "H1'" H N N 164 DM2 "H2'1" H N N 165 DM2 "H2'2" H N N 166 DM2 "H3'" H N N 167 DM2 "HN'1" H N N 168 DM2 "HN'2" H N N 169 DM2 "H4'" H N N 170 DM2 "HO4'" H N N 171 DM2 "H5'" H N N 172 DM2 "H6'1" H N N 173 DM2 "H6'2" H N N 174 DM2 "H6'3" H N N 175 DT OP3 O N N 176 DT P P N N 177 DT OP1 O N N 178 DT OP2 O N N 179 DT "O5'" O N N 180 DT "C5'" C N N 181 DT "C4'" C N R 182 DT "O4'" O N N 183 DT "C3'" C N S 184 DT "O3'" O N N 185 DT "C2'" C N N 186 DT "C1'" C N R 187 DT N1 N N N 188 DT C2 C N N 189 DT O2 O N N 190 DT N3 N N N 191 DT C4 C N N 192 DT O4 O N N 193 DT C5 C N N 194 DT C7 C N N 195 DT C6 C N N 196 DT HOP3 H N N 197 DT HOP2 H N N 198 DT "H5'" H N N 199 DT "H5''" H N N 200 DT "H4'" H N N 201 DT "H3'" H N N 202 DT "HO3'" H N N 203 DT "H2'" H N N 204 DT "H2''" H N N 205 DT "H1'" H N N 206 DT H3 H N N 207 DT H71 H N N 208 DT H72 H N N 209 DT H73 H N N 210 DT H6 H N N 211 HOH O O N N 212 HOH H1 H N N 213 HOH H2 H N N 214 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DM2 C1 C2 doub Y N 113 DM2 C1 C20 sing Y N 114 DM2 C1 H1 sing N N 115 DM2 C2 C3 sing Y N 116 DM2 C2 H2 sing N N 117 DM2 C3 C4 doub Y N 118 DM2 C3 H3 sing N N 119 DM2 C4 O4 sing N N 120 DM2 C4 C5 sing Y N 121 DM2 O4 C21 sing N N 122 DM2 C5 C6 sing N N 123 DM2 C5 C20 doub Y N 124 DM2 C6 O6 doub N N 125 DM2 C6 C7 sing N N 126 DM2 C7 C8 doub Y N 127 DM2 C7 C18 sing Y N 128 DM2 C8 O8 sing N N 129 DM2 C8 C9 sing Y N 130 DM2 O8 HO8 sing N N 131 DM2 C9 C10 sing N N 132 DM2 C9 C16 doub Y N 133 DM2 C10 O10 sing N N 134 DM2 C10 C11 sing N N 135 DM2 C10 H10 sing N N 136 DM2 O10 "C1'" sing N N 137 DM2 C11 C12 sing N N 138 DM2 C11 H111 sing N N 139 DM2 C11 H112 sing N N 140 DM2 C12 O12 sing N N 141 DM2 C12 C13 sing N N 142 DM2 C12 C15 sing N N 143 DM2 O12 HO12 sing N N 144 DM2 C13 O13 doub N N 145 DM2 C13 C14 sing N N 146 DM2 C14 O14 sing N N 147 DM2 C14 H141 sing N N 148 DM2 C14 H142 sing N N 149 DM2 O14 HO14 sing N N 150 DM2 C15 C16 sing N N 151 DM2 C15 H151 sing N N 152 DM2 C15 H152 sing N N 153 DM2 C16 C17 sing Y N 154 DM2 C17 O17 sing N N 155 DM2 C17 C18 doub Y N 156 DM2 O17 HO17 sing N N 157 DM2 C18 C19 sing N N 158 DM2 C19 O19 doub N N 159 DM2 C19 C20 sing N N 160 DM2 C21 H211 sing N N 161 DM2 C21 H212 sing N N 162 DM2 C21 H213 sing N N 163 DM2 "C1'" "C2'" sing N N 164 DM2 "C1'" "O5'" sing N N 165 DM2 "C1'" "H1'" sing N N 166 DM2 "C2'" "C3'" sing N N 167 DM2 "C2'" "H2'1" sing N N 168 DM2 "C2'" "H2'2" sing N N 169 DM2 "C3'" "N3'" sing N N 170 DM2 "C3'" "C4'" sing N N 171 DM2 "C3'" "H3'" sing N N 172 DM2 "N3'" "HN'1" sing N N 173 DM2 "N3'" "HN'2" sing N N 174 DM2 "C4'" "O4'" sing N N 175 DM2 "C4'" "C5'" sing N N 176 DM2 "C4'" "H4'" sing N N 177 DM2 "O4'" "HO4'" sing N N 178 DM2 "C5'" "O5'" sing N N 179 DM2 "C5'" "C6'" sing N N 180 DM2 "C5'" "H5'" sing N N 181 DM2 "C6'" "H6'1" sing N N 182 DM2 "C6'" "H6'2" sing N N 183 DM2 "C6'" "H6'3" sing N N 184 DT OP3 P sing N N 185 DT OP3 HOP3 sing N N 186 DT P OP1 doub N N 187 DT P OP2 sing N N 188 DT P "O5'" sing N N 189 DT OP2 HOP2 sing N N 190 DT "O5'" "C5'" sing N N 191 DT "C5'" "C4'" sing N N 192 DT "C5'" "H5'" sing N N 193 DT "C5'" "H5''" sing N N 194 DT "C4'" "O4'" sing N N 195 DT "C4'" "C3'" sing N N 196 DT "C4'" "H4'" sing N N 197 DT "O4'" "C1'" sing N N 198 DT "C3'" "O3'" sing N N 199 DT "C3'" "C2'" sing N N 200 DT "C3'" "H3'" sing N N 201 DT "O3'" "HO3'" sing N N 202 DT "C2'" "C1'" sing N N 203 DT "C2'" "H2'" sing N N 204 DT "C2'" "H2''" sing N N 205 DT "C1'" N1 sing N N 206 DT "C1'" "H1'" sing N N 207 DT N1 C2 sing N N 208 DT N1 C6 sing N N 209 DT C2 O2 doub N N 210 DT C2 N3 sing N N 211 DT N3 C4 sing N N 212 DT N3 H3 sing N N 213 DT C4 O4 doub N N 214 DT C4 C5 sing N N 215 DT C5 C7 sing N N 216 DT C5 C6 doub N N 217 DT C7 H71 sing N N 218 DT C7 H72 sing N N 219 DT C7 H73 sing N N 220 DT C6 H6 sing N N 221 HOH O H1 sing N N 222 HOH O H2 sing N N 223 # _ndb_struct_conf_na.entry_id 1DA9 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 A DA 6 8_555 -0.022 -0.438 -0.124 11.772 1.440 1.698 1 A_DT1:DA6_A A 1 ? A 6 ? 20 1 1 A DG 2 1_555 A DC 5 8_555 -0.202 -0.123 -0.574 -15.334 6.294 -0.535 2 A_DG2:DC5_A A 2 ? A 5 ? 19 1 1 A DG 3 1_555 A DC 4 8_555 -0.262 -0.058 0.069 -2.575 -2.237 0.191 3 A_DG3:DC4_A A 3 ? A 4 ? 19 1 1 A DC 4 1_555 A DG 3 8_555 0.262 -0.058 0.069 2.575 -2.237 0.191 4 A_DC4:DG3_A A 4 ? A 3 ? 19 1 1 A DC 5 1_555 A DG 2 8_555 0.202 -0.123 -0.574 15.334 6.294 -0.535 5 A_DC5:DG2_A A 5 ? A 2 ? 19 1 1 A DA 6 1_555 A DT 1 8_555 0.022 -0.438 -0.124 -11.772 1.440 1.698 6 A_DA6:DT1_A A 6 ? A 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 A DA 6 8_555 A DG 2 1_555 A DC 5 8_555 1.254 1.103 7.121 3.145 1.200 34.769 1.439 -1.044 7.236 2.002 -5.248 34.926 1 AA_DT1DG2:DC5DA6_AA A 1 ? A 6 ? A 2 ? A 5 ? 1 A DG 2 1_555 A DC 5 8_555 A DG 3 1_555 A DC 4 8_555 -1.455 0.946 3.070 -8.247 4.791 28.505 0.817 1.072 3.457 9.404 16.185 30.027 2 AA_DG2DG3:DC4DC5_AA A 2 ? A 5 ? A 3 ? A 4 ? 1 A DG 3 1_555 A DC 4 8_555 A DC 4 1_555 A DG 3 8_555 0.000 -0.390 3.388 0.000 -0.830 35.283 -0.515 0.000 3.396 -1.370 0.000 35.292 3 AA_DG3DC4:DG3DC4_AA A 3 ? A 4 ? A 4 ? A 3 ? 1 A DC 4 1_555 A DG 3 8_555 A DC 5 1_555 A DG 2 8_555 1.455 0.946 3.070 8.247 4.791 28.505 0.817 -1.072 3.457 9.404 -16.185 30.027 4 AA_DC4DC5:DG2DG3_AA A 4 ? A 3 ? A 5 ? A 2 ? 1 A DC 5 1_555 A DG 2 8_555 A DA 6 1_555 A DT 1 8_555 -1.254 1.103 7.121 -3.145 1.200 34.769 1.439 1.044 7.236 2.002 5.248 34.926 5 AA_DC5DA6:DT1DG2_AA A 5 ? A 2 ? A 6 ? A 1 ? # _atom_sites.entry_id 1DA9 _atom_sites.fract_transf_matrix[1][1] 0.035701 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035701 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018871 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DT A 1 1 ? -18.744 20.195 22.722 1.00 36.68 ? 1 DT A "O5'" 1 ATOM 2 C "C5'" . DT A 1 1 ? -18.262 20.915 23.867 1.00 4.63 ? 1 DT A "C5'" 1 ATOM 3 C "C4'" . DT A 1 1 ? -16.837 20.481 24.110 1.00 5.29 ? 1 DT A "C4'" 1 ATOM 4 O "O4'" . DT A 1 1 ? -16.624 19.321 24.810 1.00 18.73 ? 1 DT A "O4'" 1 ATOM 5 C "C3'" . DT A 1 1 ? -15.996 20.366 22.849 1.00 17.42 ? 1 DT A "C3'" 1 ATOM 6 O "O3'" . DT A 1 1 ? -14.873 21.260 23.067 1.00 28.51 ? 1 DT A "O3'" 1 ATOM 7 C "C2'" . DT A 1 1 ? -15.557 18.910 22.855 1.00 11.81 ? 1 DT A "C2'" 1 ATOM 8 C "C1'" . DT A 1 1 ? -15.478 18.540 24.365 1.00 10.48 ? 1 DT A "C1'" 1 ATOM 9 N N1 . DT A 1 1 ? -15.982 17.123 24.450 1.00 11.01 ? 1 DT A N1 1 ATOM 10 C C2 . DT A 1 1 ? -15.097 16.125 24.720 1.00 2.00 ? 1 DT A C2 1 ATOM 11 O O2 . DT A 1 1 ? -13.921 16.352 24.884 1.00 12.06 ? 1 DT A O2 1 ATOM 12 N N3 . DT A 1 1 ? -15.610 14.893 24.810 1.00 2.92 ? 1 DT A N3 1 ATOM 13 C C4 . DT A 1 1 ? -16.896 14.604 24.630 1.00 2.00 ? 1 DT A C4 1 ATOM 14 O O4 . DT A 1 1 ? -17.324 13.422 24.693 1.00 9.78 ? 1 DT A O4 1 ATOM 15 C C5 . DT A 1 1 ? -17.820 15.669 24.360 1.00 8.71 ? 1 DT A C5 1 ATOM 16 C C7 . DT A 1 1 ? -19.265 15.403 24.132 1.00 12.27 ? 1 DT A C7 1 ATOM 17 C C6 . DT A 1 1 ? -17.330 16.904 24.275 1.00 10.82 ? 1 DT A C6 1 ATOM 18 P P . DG A 1 2 ? -14.347 22.307 21.991 1.00 40.20 ? 2 DG A P 1 ATOM 19 O OP1 . DG A 1 2 ? -13.338 23.125 22.722 1.00 63.29 ? 2 DG A OP1 1 ATOM 20 O OP2 . DG A 1 2 ? -15.450 23.108 21.392 1.00 40.57 ? 2 DG A OP2 1 ATOM 21 O "O5'" . DG A 1 2 ? -13.658 21.310 20.905 1.00 34.26 ? 2 DG A "O5'" 1 ATOM 22 C "C5'" . DG A 1 2 ? -12.291 20.909 21.085 1.00 20.80 ? 2 DG A "C5'" 1 ATOM 23 C "C4'" . DG A 1 2 ? -11.980 19.910 19.972 1.00 16.93 ? 2 DG A "C4'" 1 ATOM 24 O "O4'" . DG A 1 2 ? -12.977 18.898 19.945 1.00 17.70 ? 2 DG A "O4'" 1 ATOM 25 C "C3'" . DG A 1 2 ? -12.022 20.573 18.605 1.00 20.26 ? 2 DG A "C3'" 1 ATOM 26 O "O3'" . DG A 1 2 ? -10.775 20.422 17.932 1.00 37.10 ? 2 DG A "O3'" 1 ATOM 27 C "C2'" . DG A 1 2 ? -13.204 19.910 17.911 1.00 21.57 ? 2 DG A "C2'" 1 ATOM 28 C "C1'" . DG A 1 2 ? -13.064 18.557 18.541 1.00 12.82 ? 2 DG A "C1'" 1 ATOM 29 N N9 . DG A 1 2 ? -14.212 17.697 18.409 1.00 4.96 ? 2 DG A N9 1 ATOM 30 C C8 . DG A 1 2 ? -15.517 18.055 18.398 1.00 2.00 ? 2 DG A C8 1 ATOM 31 N N7 . DG A 1 2 ? -16.327 17.024 18.308 1.00 8.72 ? 2 DG A N7 1 ATOM 32 C C5 . DG A 1 2 ? -15.506 15.910 18.266 1.00 3.32 ? 2 DG A C5 1 ATOM 33 C C6 . DG A 1 2 ? -15.812 14.532 18.223 1.00 2.00 ? 2 DG A C6 1 ATOM 34 O O6 . DG A 1 2 ? -16.840 13.910 18.091 1.00 4.77 ? 2 DG A O6 1 ATOM 35 N N1 . DG A 1 2 ? -14.694 13.728 18.266 1.00 2.51 ? 2 DG A N1 1 ATOM 36 C C2 . DG A 1 2 ? -13.445 14.221 18.329 1.00 2.00 ? 2 DG A C2 1 ATOM 37 N N2 . DG A 1 2 ? -12.532 13.288 18.366 1.00 2.00 ? 2 DG A N2 1 ATOM 38 N N3 . DG A 1 2 ? -13.103 15.495 18.393 1.00 8.79 ? 2 DG A N3 1 ATOM 39 C C4 . DG A 1 2 ? -14.181 16.310 18.345 1.00 2.00 ? 2 DG A C4 1 ATOM 40 P P . DG A 1 3 ? -10.084 21.571 17.026 1.00 26.26 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? -9.568 22.786 17.757 1.00 40.14 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? -10.988 21.881 15.923 1.00 29.51 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? -8.804 20.680 16.570 1.00 13.32 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? -7.963 20.069 17.598 1.00 12.91 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? -7.619 18.719 16.989 1.00 20.72 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? -8.663 17.764 16.962 1.00 17.26 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? -7.131 18.884 15.547 1.00 15.34 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? -6.036 17.999 15.341 1.00 22.87 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? -8.350 18.391 14.768 1.00 29.11 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? -8.815 17.229 15.627 1.00 12.65 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? -10.263 17.022 15.420 1.00 10.91 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? -11.221 17.968 15.436 1.00 10.59 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? -12.417 17.445 15.282 1.00 5.42 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? -12.226 16.097 15.219 1.00 6.12 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? -13.176 15.030 15.054 1.00 2.00 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? -14.394 15.139 14.933 1.00 10.43 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? -12.596 13.803 14.996 1.00 2.00 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? -11.268 13.672 15.102 1.00 2.52 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? -10.823 12.428 15.039 1.00 4.36 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? -10.288 14.593 15.256 1.00 15.60 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? -10.896 15.809 15.304 1.00 7.16 ? 3 DG A C4 1 ATOM 62 P P . DC A 1 4 ? -5.129 17.968 14.032 1.00 15.15 ? 4 DC A P 1 ATOM 63 O OP1 . DC A 1 4 ? -3.697 17.809 14.445 1.00 21.21 ? 4 DC A OP1 1 ATOM 64 O OP2 . DC A 1 4 ? -5.582 19.167 13.306 1.00 21.63 ? 4 DC A OP2 1 ATOM 65 O "O5'" . DC A 1 4 ? -5.479 16.560 13.353 1.00 10.31 ? 4 DC A "O5'" 1 ATOM 66 C "C5'" . DC A 1 4 ? -4.910 15.279 13.703 1.00 12.76 ? 4 DC A "C5'" 1 ATOM 67 C "C4'" . DC A 1 4 ? -5.798 14.282 12.940 1.00 11.59 ? 4 DC A "C4'" 1 ATOM 68 O "O4'" . DC A 1 4 ? -7.171 14.560 13.083 1.00 18.67 ? 4 DC A "O4'" 1 ATOM 69 C "C3'" . DC A 1 4 ? -5.540 14.537 11.446 1.00 18.68 ? 4 DC A "C3'" 1 ATOM 70 O "O3'" . DC A 1 4 ? -4.504 13.683 11.033 1.00 30.79 ? 4 DC A "O3'" 1 ATOM 71 C "C2'" . DC A 1 4 ? -6.874 14.352 10.805 1.00 16.89 ? 4 DC A "C2'" 1 ATOM 72 C "C1'" . DC A 1 4 ? -7.815 13.960 11.928 1.00 6.37 ? 4 DC A "C1'" 1 ATOM 73 N N1 . DC A 1 4 ? -9.126 14.652 11.780 1.00 4.49 ? 4 DC A N1 1 ATOM 74 C C2 . DC A 1 4 ? -10.238 13.857 11.690 1.00 5.23 ? 4 DC A C2 1 ATOM 75 O O2 . DC A 1 4 ? -10.033 12.649 11.631 1.00 15.49 ? 4 DC A O2 1 ATOM 76 N N3 . DC A 1 4 ? -11.532 14.397 11.642 1.00 6.64 ? 4 DC A N3 1 ATOM 77 C C4 . DC A 1 4 ? -11.616 15.739 11.684 1.00 2.00 ? 4 DC A C4 1 ATOM 78 N N4 . DC A 1 4 ? -12.739 16.439 11.621 1.00 3.16 ? 4 DC A N4 1 ATOM 79 C C5 . DC A 1 4 ? -10.408 16.548 11.743 1.00 4.67 ? 4 DC A C5 1 ATOM 80 C C6 . DC A 1 4 ? -9.201 15.957 11.811 1.00 4.94 ? 4 DC A C6 1 ATOM 81 P P . DC A 1 5 ? -3.756 13.529 9.644 1.00 31.11 ? 5 DC A P 1 ATOM 82 O OP1 . DC A 1 5 ? -2.526 12.655 9.793 1.00 40.44 ? 5 DC A OP1 1 ATOM 83 O OP2 . DC A 1 5 ? -3.462 14.873 9.141 1.00 18.56 ? 5 DC A OP2 1 ATOM 84 O "O5'" . DC A 1 5 ? -4.798 12.834 8.643 1.00 20.11 ? 5 DC A "O5'" 1 ATOM 85 C "C5'" . DC A 1 5 ? -5.350 11.537 8.489 1.00 8.04 ? 5 DC A "C5'" 1 ATOM 86 C "C4'" . DC A 1 5 ? -6.414 11.543 7.429 1.00 6.23 ? 5 DC A "C4'" 1 ATOM 87 O "O4'" . DC A 1 5 ? -7.650 12.025 7.890 1.00 14.69 ? 5 DC A "O4'" 1 ATOM 88 C "C3'" . DC A 1 5 ? -6.213 12.249 6.115 1.00 15.17 ? 5 DC A "C3'" 1 ATOM 89 O "O3'" . DC A 1 5 ? -6.854 11.610 4.981 1.00 24.32 ? 5 DC A "O3'" 1 ATOM 90 C "C2'" . DC A 1 5 ? -6.868 13.624 6.348 1.00 13.77 ? 5 DC A "C2'" 1 ATOM 91 C "C1'" . DC A 1 5 ? -8.061 13.156 7.175 1.00 8.59 ? 5 DC A "C1'" 1 ATOM 92 N N1 . DC A 1 5 ? -8.773 14.308 7.662 1.00 5.36 ? 5 DC A N1 1 ATOM 93 C C2 . DC A 1 5 ? -10.109 14.095 7.964 1.00 2.00 ? 5 DC A C2 1 ATOM 94 O O2 . DC A 1 5 ? -10.689 13.019 7.991 1.00 8.86 ? 5 DC A O2 1 ATOM 95 N N3 . DC A 1 5 ? -10.871 15.167 8.304 1.00 7.67 ? 5 DC A N3 1 ATOM 96 C C4 . DC A 1 5 ? -10.352 16.391 8.372 1.00 2.00 ? 5 DC A C4 1 ATOM 97 N N4 . DC A 1 5 ? -11.215 17.377 8.701 1.00 9.14 ? 5 DC A N4 1 ATOM 98 C C5 . DC A 1 5 ? -8.966 16.613 8.102 1.00 6.99 ? 5 DC A C5 1 ATOM 99 C C6 . DC A 1 5 ? -8.210 15.562 7.742 1.00 2.59 ? 5 DC A C6 1 ATOM 100 P P . DA A 1 6 ? -6.047 10.375 4.319 1.00 23.71 ? 6 DA A P 1 ATOM 101 O OP1 . DA A 1 6 ? -5.694 9.442 5.474 1.00 43.55 ? 6 DA A OP1 1 ATOM 102 O OP2 . DA A 1 6 ? -4.949 10.958 3.619 1.00 22.81 ? 6 DA A OP2 1 ATOM 103 O "O5'" . DA A 1 6 ? -7.053 9.616 3.386 1.00 25.29 ? 6 DA A "O5'" 1 ATOM 104 C "C5'" . DA A 1 6 ? -8.098 8.826 3.995 1.00 24.11 ? 6 DA A "C5'" 1 ATOM 105 C "C4'" . DA A 1 6 ? -9.047 8.400 2.957 1.00 23.56 ? 6 DA A "C4'" 1 ATOM 106 O "O4'" . DA A 1 6 ? -10.114 9.255 2.687 1.00 27.42 ? 6 DA A "O4'" 1 ATOM 107 C "C3'" . DA A 1 6 ? -8.599 7.916 1.590 1.00 29.75 ? 6 DA A "C3'" 1 ATOM 108 O "O3'" . DA A 1 6 ? -9.582 6.893 1.245 1.00 37.84 ? 6 DA A "O3'" 1 ATOM 109 C "C2'" . DA A 1 6 ? -8.795 9.193 0.747 1.00 17.75 ? 6 DA A "C2'" 1 ATOM 110 C "C1'" . DA A 1 6 ? -10.173 9.627 1.266 1.00 4.81 ? 6 DA A "C1'" 1 ATOM 111 N N9 . DA A 1 6 ? -10.285 11.058 1.314 1.00 5.20 ? 6 DA A N9 1 ATOM 112 C C8 . DA A 1 6 ? -9.196 11.893 1.473 1.00 2.00 ? 6 DA A C8 1 ATOM 113 N N7 . DA A 1 6 ? -9.481 13.137 1.537 1.00 3.04 ? 6 DA A N7 1 ATOM 114 C C5 . DA A 1 6 ? -10.871 13.153 1.457 1.00 7.06 ? 6 DA A C5 1 ATOM 115 C C6 . DA A 1 6 ? -11.770 14.268 1.457 1.00 2.00 ? 6 DA A C6 1 ATOM 116 N N6 . DA A 1 6 ? -11.336 15.495 1.526 1.00 2.00 ? 6 DA A N6 1 ATOM 117 N N1 . DA A 1 6 ? -13.053 13.957 1.341 1.00 8.50 ? 6 DA A N1 1 ATOM 118 C C2 . DA A 1 6 ? -13.434 12.621 1.282 1.00 2.00 ? 6 DA A C2 1 ATOM 119 N N3 . DA A 1 6 ? -12.683 11.526 1.298 1.00 4.39 ? 6 DA A N3 1 ATOM 120 C C4 . DA A 1 6 ? -11.392 11.885 1.357 1.00 4.92 ? 6 DA A C4 1 HETATM 121 C C1 . DM2 B 2 . ? -12.358 18.750 5.310 1.00 2.93 ? 7 DM2 A C1 1 HETATM 122 C C2 . DM2 B 2 . ? -11.204 19.523 5.325 1.00 8.87 ? 7 DM2 A C2 1 HETATM 123 C C3 . DM2 B 2 . ? -9.986 19.005 5.167 1.00 15.30 ? 7 DM2 A C3 1 HETATM 124 C C4 . DM2 B 2 . ? -9.809 17.621 4.992 1.00 9.22 ? 7 DM2 A C4 1 HETATM 125 O O4 . DM2 B 2 . ? -8.613 16.960 4.880 1.00 9.20 ? 7 DM2 A O4 1 HETATM 126 C C5 . DM2 B 2 . ? -10.980 16.770 4.981 1.00 3.20 ? 7 DM2 A C5 1 HETATM 127 C C6 . DM2 B 2 . ? -10.885 15.305 4.827 1.00 6.82 ? 7 DM2 A C6 1 HETATM 128 O O6 . DM2 B 2 . ? -9.789 14.750 4.631 1.00 13.73 ? 7 DM2 A O6 1 HETATM 129 C C7 . DM2 B 2 . ? -12.134 14.557 4.838 1.00 5.93 ? 7 DM2 A C7 1 HETATM 130 C C8 . DM2 B 2 . ? -12.095 13.182 4.690 1.00 7.52 ? 7 DM2 A C8 1 HETATM 131 O O8 . DM2 B 2 . ? -10.921 12.476 4.668 1.00 15.03 ? 7 DM2 A O8 1 HETATM 132 C C9 . DM2 B 2 . ? -13.350 12.459 4.695 1.00 13.12 ? 7 DM2 A C9 1 HETATM 133 C C10 . DM2 B 2 . ? -13.305 10.952 4.695 1.00 15.10 ? 7 DM2 A C10 1 HETATM 134 O O10 . DM2 B 2 . ? -12.585 10.481 5.834 1.00 18.99 ? 7 DM2 A O10 1 HETATM 135 C C11 . DM2 B 2 . ? -14.714 10.353 4.557 1.00 10.53 ? 7 DM2 A C11 1 HETATM 136 C C12 . DM2 B 2 . ? -15.697 10.966 5.537 1.00 11.48 ? 7 DM2 A C12 1 HETATM 137 O O12 . DM2 B 2 . ? -15.372 10.907 6.926 1.00 28.08 ? 7 DM2 A O12 1 HETATM 138 C C13 . DM2 B 2 . ? -16.840 9.983 5.310 1.00 25.57 ? 7 DM2 A C13 1 HETATM 139 O O13 . DM2 B 2 . ? -17.383 10.008 4.250 1.00 27.28 ? 7 DM2 A O13 1 HETATM 140 C C14 . DM2 B 2 . ? -17.425 9.173 6.433 1.00 32.75 ? 7 DM2 A C14 1 HETATM 141 O O14 . DM2 B 2 . ? -17.842 7.969 5.850 1.00 50.33 ? 7 DM2 A O14 1 HETATM 142 C C15 . DM2 B 2 . ? -15.884 12.386 5.045 1.00 19.29 ? 7 DM2 A C15 1 HETATM 143 C C16 . DM2 B 2 . ? -14.560 13.109 4.827 1.00 6.56 ? 7 DM2 A C16 1 HETATM 144 C C17 . DM2 B 2 . ? -14.557 14.495 4.986 1.00 2.00 ? 7 DM2 A C17 1 HETATM 145 O O17 . DM2 B 2 . ? -15.711 15.184 5.151 1.00 7.98 ? 7 DM2 A O17 1 HETATM 146 C C18 . DM2 B 2 . ? -13.350 15.195 4.986 1.00 6.46 ? 7 DM2 A C18 1 HETATM 147 C C19 . DM2 B 2 . ? -13.436 16.632 5.135 1.00 2.00 ? 7 DM2 A C19 1 HETATM 148 O O19 . DM2 B 2 . ? -14.523 17.195 5.278 1.00 16.31 ? 7 DM2 A O19 1 HETATM 149 C C20 . DM2 B 2 . ? -12.207 17.377 5.140 1.00 5.78 ? 7 DM2 A C20 1 HETATM 150 C C21 . DM2 B 2 . ? -7.400 17.772 4.854 1.00 8.54 ? 7 DM2 A C21 1 HETATM 151 C "C1'" . DM2 B 2 . ? -11.834 9.350 5.813 1.00 17.51 ? 7 DM2 A "C1'" 1 HETATM 152 C "C2'" . DM2 B 2 . ? -11.358 9.330 7.223 1.00 39.12 ? 7 DM2 A "C2'" 1 HETATM 153 C "C3'" . DM2 B 2 . ? -12.212 8.540 8.224 1.00 30.41 ? 7 DM2 A "C3'" 1 HETATM 154 N "N3'" . DM2 B 2 . ? -11.280 8.061 9.289 1.00 46.08 ? 7 DM2 A "N3'" 1 HETATM 155 C "C4'" . DM2 B 2 . ? -12.899 7.347 7.657 1.00 34.76 ? 7 DM2 A "C4'" 1 HETATM 156 O "O4'" . DM2 B 2 . ? -11.882 6.431 7.366 1.00 43.52 ? 7 DM2 A "O4'" 1 HETATM 157 C "C5'" . DM2 B 2 . ? -13.431 7.518 6.279 1.00 24.17 ? 7 DM2 A "C5'" 1 HETATM 158 O "O5'" . DM2 B 2 . ? -12.476 8.154 5.421 1.00 13.01 ? 7 DM2 A "O5'" 1 HETATM 159 C "C6'" . DM2 B 2 . ? -13.632 6.123 5.585 1.00 20.93 ? 7 DM2 A "C6'" 1 HETATM 160 O O . HOH C 3 . ? -7.061 7.257 7.307 1.00 32.08 ? 8 HOH A O 1 HETATM 161 O O . HOH C 3 . ? -22.943 12.731 25.637 1.00 80.00 ? 9 HOH A O 1 HETATM 162 O O . HOH C 3 . ? -8.633 17.260 1.261 1.00 28.48 ? 10 HOH A O 1 HETATM 163 O O . HOH C 3 . ? -9.445 19.940 9.135 1.00 26.48 ? 11 HOH A O 1 HETATM 164 O O . HOH C 3 . ? -4.731 16.291 7.419 1.00 22.33 ? 12 HOH A O 1 HETATM 165 O O . HOH C 3 . ? -13.971 8.930 1.065 1.00 20.71 ? 13 HOH A O 1 HETATM 166 O O . HOH C 3 . ? -15.097 21.047 14.705 1.00 45.35 ? 14 HOH A O 1 HETATM 167 O O . HOH C 3 . ? -19.515 11.624 24.799 1.00 27.14 ? 15 HOH A O 1 HETATM 168 O O . HOH C 3 . ? -10.938 20.775 12.278 1.00 52.41 ? 16 HOH A O 1 HETATM 169 O O . HOH C 3 . ? -11.943 18.394 25.509 1.00 72.88 ? 17 HOH A O 1 HETATM 170 O O . HOH C 3 . ? -2.753 9.086 6.131 1.00 38.97 ? 18 HOH A O 1 HETATM 171 O O . HOH C 3 . ? -12.467 20.848 25.478 1.00 52.69 ? 19 HOH A O 1 HETATM 172 O O . HOH C 3 . ? -9.501 10.086 9.506 1.00 36.06 ? 20 HOH A O 1 HETATM 173 O O . HOH C 3 . ? -19.461 15.092 17.423 1.00 52.28 ? 21 HOH A O 1 HETATM 174 O O . HOH C 3 . ? -8.425 24.878 14.959 1.00 45.10 ? 22 HOH A O 1 HETATM 175 O O . HOH C 3 . ? -18.551 5.235 6.698 1.00 26.02 ? 23 HOH A O 1 HETATM 176 O O . HOH C 3 . ? -15.218 24.520 16.846 1.00 55.30 ? 24 HOH A O 1 HETATM 177 O O . HOH C 3 . ? -16.229 17.078 14.170 1.00 27.41 ? 25 HOH A O 1 HETATM 178 O O . HOH C 3 . ? -17.097 21.503 18.933 1.00 50.92 ? 26 HOH A O 1 HETATM 179 O O . HOH C 3 . ? -14.504 24.803 19.177 1.00 68.80 ? 27 HOH A O 1 HETATM 180 O O . HOH C 3 . ? -10.666 4.529 8.977 1.00 58.23 ? 28 HOH A O 1 HETATM 181 O O . HOH C 3 . ? -2.625 11.809 0.090 1.00 67.02 ? 29 HOH A O 1 HETATM 182 O O . HOH C 3 . ? -11.030 7.899 12.325 1.00 54.50 ? 30 HOH A O 1 HETATM 183 O O . HOH C 3 . ? -16.887 18.753 5.622 1.00 38.60 ? 31 HOH A O 1 HETATM 184 O O . HOH C 3 . ? -21.856 13.165 23.437 1.00 43.56 ? 32 HOH A O 1 HETATM 185 O O . HOH C 3 . ? -5.470 13.929 2.406 1.00 34.57 ? 33 HOH A O 1 HETATM 186 O O . HOH C 3 . ? -2.490 13.781 4.965 1.00 56.90 ? 34 HOH A O 1 HETATM 187 O O . HOH C 3 . ? -7.350 18.778 11.154 1.00 22.10 ? 35 HOH A O 1 HETATM 188 O O . HOH C 3 . ? -9.207 22.747 13.226 1.00 42.84 ? 36 HOH A O 1 HETATM 189 O O . HOH C 3 . ? -19.797 5.778 0.148 1.00 62.47 ? 37 HOH A O 1 HETATM 190 O O . HOH C 3 . ? -21.545 12.613 19.029 1.00 61.66 ? 38 HOH A O 1 HETATM 191 O O . HOH C 3 . ? -13.106 1.767 11.382 1.00 38.63 ? 39 HOH A O 1 HETATM 192 O O . HOH C 3 . ? -22.108 14.761 21.487 1.00 31.67 ? 40 HOH A O 1 HETATM 193 O O . HOH C 3 . ? -19.747 16.520 14.927 1.00 33.45 ? 41 HOH A O 1 HETATM 194 O O . HOH C 3 . ? -12.862 3.815 10.667 1.00 65.41 ? 42 HOH A O 1 HETATM 195 O O . HOH C 3 . ? -15.100 3.552 8.272 1.00 46.31 ? 43 HOH A O 1 HETATM 196 O O . HOH C 3 . ? -16.870 3.874 -0.758 1.00 69.10 ? 44 HOH A O 1 HETATM 197 O O . HOH C 3 . ? -24.934 15.109 19.951 1.00 84.02 ? 45 HOH A O 1 HETATM 198 O O . HOH C 3 . ? -19.411 17.313 18.626 1.00 59.26 ? 46 HOH A O 1 HETATM 199 O O . HOH C 3 . ? -19.688 20.271 17.513 1.00 82.79 ? 47 HOH A O 1 HETATM 200 O O . HOH C 3 . ? -7.585 24.254 17.216 1.00 69.24 ? 48 HOH A O 1 HETATM 201 O O . HOH C 3 . ? -14.977 18.806 14.885 1.00 44.61 ? 49 HOH A O 1 HETATM 202 O O . HOH C 3 . ? -18.330 17.982 14.842 1.00 50.95 ? 50 HOH A O 1 #