0.013661
0.000000
0.004203
0.000000
0.020325
0.000000
0.000000
0.000000
0.016930
0.00000
0.00000
0.00000
Huang, W.
Jia, J.
Schneider, G.
Lindqvist, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
107.10
90.00
73.200
49.200
61.800
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H20 N2 O4
232.277
7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
CA
N
117
N
N
N
118
R
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
S
N
123
N
O
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
C
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
C
N
139
R
C
N
140
S
C
N
141
N
C
N
142
N
N
N
143
N
C
N
144
N
O
N
145
N
O
N
146
N
N
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
N
N
168
S
C
N
169
N
C
N
170
N
O
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
N
N
176
N
O
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
N
N
188
S
C
N
189
N
C
N
190
N
O
N
191
N
C
N
192
N
C
N
193
N
C
N
194
N
O
N
195
N
O
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
N
C
N
208
N
C
N
209
N
O
N
210
N
O
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
Y
221
N
C
Y
222
N
N
Y
223
N
C
Y
224
N
C
Y
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
O
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
S
C
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
N
N
263
S
C
N
264
N
C
N
265
N
O
N
266
N
C
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
O
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
N
289
N
C
N
290
N
C
N
291
N
C
N
292
N
N
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
S
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
N
N
330
S
C
N
331
N
C
N
332
N
O
N
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
N
N
353
S
C
N
354
N
C
N
355
N
O
N
356
N
C
N
357
N
C
N
358
N
C
N
359
N
O
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
N
374
N
O
N
375
N
O
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
R
C
N
388
N
O
N
389
N
C
N
390
N
O
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
N
Y
409
N
C
Y
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
N
N
428
S
C
N
429
N
C
N
430
N
O
N
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
O
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
N
456
N
C
N
457
N
C
N
458
N
O
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
doub
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
sing
Y
220
N
doub
Y
221
N
doub
N
222
N
sing
Y
223
N
sing
N
224
N
sing
Y
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
Y
327
N
doub
Y
328
N
sing
Y
329
N
sing
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
doub
N
334
N
sing
Y
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
doub
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
Y
401
N
sing
Y
402
N
sing
N
403
N
sing
Y
404
N
sing
Y
405
N
doub
N
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
doub
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
Y
424
N
doub
Y
425
N
sing
Y
426
N
sing
N
427
N
sing
Y
428
N
doub
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
doub
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
34
10985
10995
10.1021/bi00035a004
7669756
Mechanism of an ATP-dependent carboxylase, dethiobiotin synthetase, based on crystallographic studies of complexes with substrates and a reaction intermediate.
1995
UK
Structure
STRUE6
2005
0969-2126
2
407
Crystal Structure of an ATP-Dependent Carboxylase, Dethiobiotin Synthetase, at 1.65 A Resolution
1994
10.2210/pdb1daf/pdb
pdb_00001daf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1994-02-26
RIGAKU RAXIS II
M
x-ray
1
1.5418
1.0
1.5418
24028.289
DETHIOBIOTIN SYNTHETASE
6.3.3.3
1
man
polymer
40.078
CALCIUM ION
1
syn
non-polymer
232.277
7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
1
syn
non-polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
156
nat
water
DTBS
no
no
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
2.21
34.
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1996-06-20
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-05-08
REL
CA
CALCIUM ION
DSD
7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
ADP
ADENOSINE-5'-DIPHOSPHATE
HOH
water
CA
227
2
CA
CA
227
A
DSD
225
3
DSD
DSD
225
A
ADP
226
4
ADP
ADP
226
A
HOH
228
5
HOH
HOH
228
A
HOH
229
5
HOH
HOH
229
A
HOH
230
5
HOH
HOH
230
A
HOH
231
5
HOH
HOH
231
A
HOH
232
5
HOH
HOH
232
A
HOH
233
5
HOH
HOH
233
A
HOH
234
5
HOH
HOH
234
A
HOH
235
5
HOH
HOH
235
A
HOH
236
5
HOH
HOH
236
A
HOH
237
5
HOH
HOH
237
A
HOH
238
5
HOH
HOH
238
A
HOH
239
5
HOH
HOH
239
A
HOH
240
5
HOH
HOH
240
A
HOH
241
5
HOH
HOH
241
A
HOH
242
5
HOH
HOH
242
A
HOH
243
5
HOH
HOH
243
A
HOH
244
5
HOH
HOH
244
A
HOH
245
5
HOH
HOH
245
A
HOH
246
5
HOH
HOH
246
A
HOH
247
5
HOH
HOH
247
A
HOH
248
5
HOH
HOH
248
A
HOH
249
5
HOH
HOH
249
A
HOH
250
5
HOH
HOH
250
A
HOH
251
5
HOH
HOH
251
A
HOH
252
5
HOH
HOH
252
A
HOH
253
5
HOH
HOH
253
A
HOH
254
5
HOH
HOH
254
A
HOH
255
5
HOH
HOH
255
A
HOH
256
5
HOH
HOH
256
A
HOH
257
5
HOH
HOH
257
A
HOH
258
5
HOH
HOH
258
A
HOH
259
5
HOH
HOH
259
A
HOH
260
5
HOH
HOH
260
A
HOH
261
5
HOH
HOH
261
A
HOH
262
5
HOH
HOH
262
A
HOH
263
5
HOH
HOH
263
A
HOH
264
5
HOH
HOH
264
A
HOH
265
5
HOH
HOH
265
A
HOH
266
5
HOH
HOH
266
A
HOH
267
5
HOH
HOH
267
A
HOH
268
5
HOH
HOH
268
A
HOH
269
5
HOH
HOH
269
A
HOH
270
5
HOH
HOH
270
A
HOH
271
5
HOH
HOH
271
A
HOH
272
5
HOH
HOH
272
A
HOH
273
5
HOH
HOH
273
A
HOH
274
5
HOH
HOH
274
A
HOH
275
5
HOH
HOH
275
A
HOH
276
5
HOH
HOH
276
A
HOH
277
5
HOH
HOH
277
A
HOH
278
5
HOH
HOH
278
A
HOH
279
5
HOH
HOH
279
A
HOH
280
5
HOH
HOH
280
A
HOH
281
5
HOH
HOH
281
A
HOH
282
5
HOH
HOH
282
A
HOH
283
5
HOH
HOH
283
A
HOH
284
5
HOH
HOH
284
A
HOH
285
5
HOH
HOH
285
A
HOH
286
5
HOH
HOH
286
A
HOH
287
5
HOH
HOH
287
A
HOH
288
5
HOH
HOH
288
A
HOH
289
5
HOH
HOH
289
A
HOH
290
5
HOH
HOH
290
A
HOH
291
5
HOH
HOH
291
A
HOH
292
5
HOH
HOH
292
A
HOH
293
5
HOH
HOH
293
A
HOH
294
5
HOH
HOH
294
A
HOH
295
5
HOH
HOH
295
A
HOH
296
5
HOH
HOH
296
A
HOH
297
5
HOH
HOH
297
A
HOH
298
5
HOH
HOH
298
A
HOH
299
5
HOH
HOH
299
A
HOH
300
5
HOH
HOH
300
A
HOH
301
5
HOH
HOH
301
A
HOH
302
5
HOH
HOH
302
A
HOH
303
5
HOH
HOH
303
A
HOH
304
5
HOH
HOH
304
A
HOH
305
5
HOH
HOH
305
A
HOH
306
5
HOH
HOH
306
A
HOH
307
5
HOH
HOH
307
A
HOH
308
5
HOH
HOH
308
A
HOH
309
5
HOH
HOH
309
A
HOH
310
5
HOH
HOH
310
A
HOH
311
5
HOH
HOH
311
A
HOH
312
5
HOH
HOH
312
A
HOH
313
5
HOH
HOH
313
A
HOH
314
5
HOH
HOH
314
A
HOH
315
5
HOH
HOH
315
A
HOH
316
5
HOH
HOH
316
A
HOH
317
5
HOH
HOH
317
A
HOH
318
5
HOH
HOH
318
A
HOH
319
5
HOH
HOH
319
A
HOH
320
5
HOH
HOH
320
A
HOH
321
5
HOH
HOH
321
A
HOH
322
5
HOH
HOH
322
A
HOH
323
5
HOH
HOH
323
A
HOH
324
5
HOH
HOH
324
A
HOH
325
5
HOH
HOH
325
A
HOH
326
5
HOH
HOH
326
A
HOH
327
5
HOH
HOH
327
A
HOH
328
5
HOH
HOH
328
A
HOH
329
5
HOH
HOH
329
A
HOH
330
5
HOH
HOH
330
A
HOH
331
5
HOH
HOH
331
A
HOH
332
5
HOH
HOH
332
A
HOH
333
5
HOH
HOH
333
A
HOH
334
5
HOH
HOH
334
A
HOH
335
5
HOH
HOH
335
A
HOH
336
5
HOH
HOH
336
A
HOH
337
5
HOH
HOH
337
A
HOH
338
5
HOH
HOH
338
A
HOH
339
5
HOH
HOH
339
A
HOH
340
5
HOH
HOH
340
A
HOH
341
5
HOH
HOH
341
A
HOH
342
5
HOH
HOH
342
A
HOH
343
5
HOH
HOH
343
A
HOH
344
5
HOH
HOH
344
A
HOH
345
5
HOH
HOH
345
A
HOH
346
5
HOH
HOH
346
A
HOH
347
5
HOH
HOH
347
A
HOH
348
5
HOH
HOH
348
A
HOH
349
5
HOH
HOH
349
A
HOH
350
5
HOH
HOH
350
A
HOH
351
5
HOH
HOH
351
A
HOH
352
5
HOH
HOH
352
A
HOH
353
5
HOH
HOH
353
A
HOH
354
5
HOH
HOH
354
A
HOH
355
5
HOH
HOH
355
A
HOH
356
5
HOH
HOH
356
A
HOH
357
5
HOH
HOH
357
A
HOH
358
5
HOH
HOH
358
A
HOH
359
5
HOH
HOH
359
A
HOH
360
5
HOH
HOH
360
A
HOH
361
5
HOH
HOH
361
A
HOH
362
5
HOH
HOH
362
A
HOH
363
5
HOH
HOH
363
A
HOH
364
5
HOH
HOH
364
A
HOH
365
5
HOH
HOH
365
A
HOH
366
5
HOH
HOH
366
A
HOH
367
5
HOH
HOH
367
A
HOH
368
5
HOH
HOH
368
A
HOH
369
5
HOH
HOH
369
A
HOH
370
5
HOH
HOH
370
A
HOH
371
5
HOH
HOH
371
A
HOH
372
5
HOH
HOH
372
A
HOH
373
5
HOH
HOH
373
A
HOH
374
5
HOH
HOH
374
A
HOH
375
5
HOH
HOH
375
A
HOH
376
5
HOH
HOH
376
A
HOH
377
5
HOH
HOH
377
A
HOH
378
5
HOH
HOH
378
A
HOH
379
5
HOH
HOH
379
A
HOH
380
5
HOH
HOH
380
A
HOH
381
5
HOH
HOH
381
A
HOH
382
5
HOH
HOH
382
A
HOH
383
5
HOH
HOH
383
A
SER
1
n
1
SER
1
A
LYS
2
n
2
LYS
2
A
ARG
3
n
3
ARG
3
A
TYR
4
n
4
TYR
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
THR
7
n
7
THR
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
ASP
10
n
10
ASP
10
A
THR
11
n
11
THR
11
A
GLU
12
n
12
GLU
12
A
VAL
13
n
13
VAL
13
A
GLY
14
n
14
GLY
14
A
LYS
15
n
15
LYS
15
A
THR
16
n
16
THR
16
A
VAL
17
n
17
VAL
17
A
ALA
18
n
18
ALA
18
A
SER
19
n
19
SER
19
A
CYS
20
n
20
CYS
20
A
ALA
21
n
21
ALA
21
A
LEU
22
n
22
LEU
22
A
LEU
23
n
23
LEU
23
A
GLN
24
n
24
GLN
24
A
ALA
25
n
25
ALA
25
A
ALA
26
n
26
ALA
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
ALA
29
n
29
ALA
29
A
GLY
30
n
30
GLY
30
A
TYR
31
n
31
TYR
31
A
ARG
32
n
32
ARG
32
A
THR
33
n
33
THR
33
A
ALA
34
n
34
ALA
34
A
GLY
35
n
35
GLY
35
A
TYR
36
n
36
TYR
36
A
LYS
37
n
37
LYS
37
A
PRO
38
n
38
PRO
38
A
VAL
39
n
39
VAL
39
A
ALA
40
n
40
ALA
40
A
SER
41
n
41
SER
41
A
GLY
42
n
42
GLY
42
A
SER
43
n
43
SER
43
A
GLU
44
n
44
GLU
44
A
LYS
45
n
45
LYS
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
GLU
48
n
48
GLU
48
A
GLY
49
n
49
GLY
49
A
LEU
50
n
50
LEU
50
A
ARG
51
n
51
ARG
51
A
ASN
52
n
52
ASN
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
ALA
57
n
57
ALA
57
A
LEU
58
n
58
LEU
58
A
GLN
59
n
59
GLN
59
A
ARG
60
n
60
ARG
60
A
ASN
61
n
61
ASN
61
A
SER
62
n
62
SER
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
GLN
65
n
65
GLN
65
A
LEU
66
n
66
LEU
66
A
ASP
67
n
67
ASP
67
A
TYR
68
n
68
TYR
68
A
ALA
69
n
69
ALA
69
A
THR
70
n
70
THR
70
A
VAL
71
n
71
VAL
71
A
ASN
72
n
72
ASN
72
A
PRO
73
n
73
PRO
73
A
TYR
74
n
74
TYR
74
A
THR
75
n
75
THR
75
A
PHE
76
n
76
PHE
76
A
ALA
77
n
77
ALA
77
A
GLU
78
n
78
GLU
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
SER
81
n
81
SER
81
A
PRO
82
n
82
PRO
82
A
HIS
83
n
83
HIS
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
SER
86
n
86
SER
86
A
ALA
87
n
87
ALA
87
A
GLN
88
n
88
GLN
88
A
GLU
89
n
89
GLU
89
A
GLY
90
n
90
GLY
90
A
ARG
91
n
91
ARG
91
A
PRO
92
n
92
PRO
92
A
ILE
93
n
93
ILE
93
A
GLU
94
n
94
GLU
94
A
SER
95
n
95
SER
95
A
LEU
96
n
96
LEU
96
A
VAL
97
n
97
VAL
97
A
MET
98
n
98
MET
98
A
SER
99
n
99
SER
99
A
ALA
100
n
100
ALA
100
A
GLY
101
n
101
GLY
101
A
LEU
102
n
102
LEU
102
A
ARG
103
n
103
ARG
103
A
ALA
104
n
104
ALA
104
A
LEU
105
n
105
LEU
105
A
GLU
106
n
106
GLU
106
A
GLN
107
n
107
GLN
107
A
GLN
108
n
108
GLN
108
A
ALA
109
n
109
ALA
109
A
ASP
110
n
110
ASP
110
A
TRP
111
n
111
TRP
111
A
VAL
112
n
112
VAL
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
GLU
115
n
115
GLU
115
A
GLY
116
n
116
GLY
116
A
ALA
117
n
117
ALA
117
A
GLY
118
n
118
GLY
118
A
GLY
119
n
119
GLY
119
A
TRP
120
n
120
TRP
120
A
PHE
121
n
121
PHE
121
A
THR
122
n
122
THR
122
A
PRO
123
n
123
PRO
123
A
LEU
124
n
124
LEU
124
A
SER
125
n
125
SER
125
A
ASP
126
n
126
ASP
126
A
THR
127
n
127
THR
127
A
PHE
128
n
128
PHE
128
A
THR
129
n
129
THR
129
A
PHE
130
n
130
PHE
130
A
ALA
131
n
131
ALA
131
A
ASP
132
n
132
ASP
132
A
TRP
133
n
133
TRP
133
A
VAL
134
n
134
VAL
134
A
THR
135
n
135
THR
135
A
GLN
136
n
136
GLN
136
A
GLU
137
n
137
GLU
137
A
GLN
138
n
138
GLN
138
A
LEU
139
n
139
LEU
139
A
PRO
140
n
140
PRO
140
A
VAL
141
n
141
VAL
141
A
ILE
142
n
142
ILE
142
A
LEU
143
n
143
LEU
143
A
VAL
144
n
144
VAL
144
A
VAL
145
n
145
VAL
145
A
GLY
146
n
146
GLY
146
A
VAL
147
n
147
VAL
147
A
LYS
148
n
148
LYS
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
CYS
151
n
151
CYS
151
A
ILE
152
n
152
ILE
152
A
ASN
153
n
153
ASN
153
A
HIS
154
n
154
HIS
154
A
ALA
155
n
155
ALA
155
A
MET
156
n
156
MET
156
A
LEU
157
n
157
LEU
157
A
THR
158
n
158
THR
158
A
ALA
159
n
159
ALA
159
A
GLN
160
n
160
GLN
160
A
VAL
161
n
161
VAL
161
A
ILE
162
n
162
ILE
162
A
GLN
163
n
163
GLN
163
A
HIS
164
n
164
HIS
164
A
ALA
165
n
165
ALA
165
A
GLY
166
n
166
GLY
166
A
LEU
167
n
167
LEU
167
A
THR
168
n
168
THR
168
A
LEU
169
n
169
LEU
169
A
ALA
170
n
170
ALA
170
A
GLY
171
n
171
GLY
171
A
TRP
172
n
172
TRP
172
A
VAL
173
n
173
VAL
173
A
ALA
174
n
174
ALA
174
A
ASN
175
n
175
ASN
175
A
ASP
176
n
176
ASP
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
PRO
179
n
179
PRO
179
A
PRO
180
n
180
PRO
180
A
GLY
181
n
181
GLY
181
A
LYS
182
n
182
LYS
182
A
ARG
183
n
183
ARG
183
A
HIS
184
n
184
HIS
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
TYR
187
n
187
TYR
187
A
MET
188
n
188
MET
188
A
THR
189
n
189
THR
189
A
THR
190
n
190
THR
190
A
LEU
191
n
191
LEU
191
A
THR
192
n
192
THR
192
A
ARG
193
n
193
ARG
193
A
MET
194
n
194
MET
194
A
ILE
195
n
195
ILE
195
A
PRO
196
n
196
PRO
196
A
ALA
197
n
197
ALA
197
A
PRO
198
n
198
PRO
198
A
LEU
199
n
199
LEU
199
A
LEU
200
n
200
LEU
200
A
GLY
201
n
201
GLY
201
A
GLU
202
n
202
GLU
202
A
ILE
203
n
203
ILE
203
A
PRO
204
n
204
PRO
204
A
TRP
205
n
205
TRP
205
A
LEU
206
n
206
LEU
206
A
ALA
207
n
207
ALA
207
A
GLU
208
n
208
GLU
208
A
ASN
209
n
209
ASN
209
A
PRO
210
n
210
PRO
210
A
GLU
211
n
211
GLU
211
A
ASN
212
n
212
ASN
212
A
ALA
213
n
213
ALA
213
A
ALA
214
n
214
ALA
214
A
THR
215
n
215
THR
215
A
GLY
216
n
216
GLY
216
A
LYS
217
n
217
LYS
217
A
TYR
218
n
218
TYR
218
A
ILE
219
n
219
ILE
219
A
ASN
220
n
220
ASN
220
A
LEU
221
n
221
LEU
221
A
ALA
222
n
222
ALA
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
author_defined_assembly
2
dimeric
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
ASP
54
A
OD2
ASP
54
1_555
47.4
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
ADP
226
D
O1A
ADP
1_555
93.7
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
ADP
226
D
O1A
ADP
1_555
101.8
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
363
E
O
HOH
1_555
113.7
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
363
E
O
HOH
1_555
66.8
A
ADP
226
D
O1A
ADP
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
363
E
O
HOH
1_555
91.5
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
370
E
O
HOH
1_555
152.4
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
370
E
O
HOH
1_555
155.6
A
ADP
226
D
O1A
ADP
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
370
E
O
HOH
1_555
92.0
A
HOH
363
E
O
HOH
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
370
E
O
HOH
1_555
93.1
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
374
E
O
HOH
1_555
82.2
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
374
E
O
HOH
1_555
129.3
A
ADP
226
D
O1A
ADP
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
374
E
O
HOH
1_555
84.1
A
HOH
363
E
O
HOH
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
374
E
O
HOH
1_555
163.8
A
HOH
370
E
O
HOH
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
374
E
O
HOH
1_555
71.6
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
380
E
O
HOH
1_555
83.9
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
380
E
O
HOH
1_555
87.2
A
ADP
226
D
O1A
ADP
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
380
E
O
HOH
1_555
165.4
A
HOH
363
E
O
HOH
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
380
E
O
HOH
1_555
102.7
A
HOH
370
E
O
HOH
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
380
E
O
HOH
1_555
83.8
A
HOH
374
E
O
HOH
1_555
A
CA
227
B
CA
CA
1_555
A
HOH
380
E
O
HOH
1_555
81.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
200
A
O
LEU
200
A
N
TRP
172
A
N
TRP
172
A
O
ALA
170
A
O
ALA
170
A
N
VAL
141
A
N
VAL
141
A
O
PRO
140
A
O
PRO
140
A
N
PHE
5
A
N
PHE
5
A
O
LYS
2
A
O
LYS
2
A
N
VAL
112
A
N
VAL
112
A
O
TRP
111
A
O
TRP
111
A
N
ALA
34
A
N
ALA
34
A
O
ALA
40
A
O
ALA
40
A
N
TYR
74
A
N
TYR
74
A
O
GLU
44
A
O
GLU
44
A
N
ARG
51
A
N
ARG
51
1
3.72
0.50
120.30
124.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
51
51
51
N
1
-3.05
0.50
120.30
117.25
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
60
60
60
N
1
4.32
0.50
120.30
124.62
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
91
91
91
N
1
5.24
0.50
120.30
125.54
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
103
103
103
N
1
-3.93
0.50
120.30
116.37
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
103
103
103
N
1
6.09
0.80
106.30
112.39
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
111
111
111
N
1
-6.62
0.80
107.30
100.68
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
111
111
111
N
1
5.52
0.80
106.30
111.82
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
120
120
120
N
1
-5.36
0.80
107.30
101.94
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
120
120
120
N
1
6.21
0.80
106.30
112.51
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
133
133
133
N
1
-5.76
0.80
107.30
101.54
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
133
133
133
N
1
5.65
0.80
106.30
111.95
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
172
172
172
N
1
-4.99
0.80
107.30
102.31
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
172
172
172
N
1
13.23
2.20
113.40
126.63
A
A
A
CA
CB
CG
ARG
ARG
ARG
193
193
193
N
1
6.27
0.80
106.30
112.57
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
205
205
205
N
1
-6.11
0.80
107.30
101.19
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
205
205
205
N
1
5.44
0.90
133.90
139.34
A
A
A
CG
CD2
CE3
TRP
TRP
TRP
205
205
205
N
1
A
PRO
179
-48.32
164.52
21.9
0.1720000
0.1720000
1.70
6.0
20718
1
1.0
1.70
6.0
200
1892
0
0
1692
0.014
2.6
1DAF
21243
1.0
0.0590000
1
2.5
93.
model building
X-PLOR
refinement
X-PLOR
data reduction
R-AXIS
phasing
X-PLOR
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID, ADP, AND CALCIUM
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
LYS
15
A
LYS
15
HELX_P
A
ALA
29
A
ALA
29
1
1
15
A
SER
53
A
SER
53
HELX_P
A
ASN
61
A
ASN
61
1
2
9
A
TYR
68
A
TYR
68
HELX_P
A
VAL
71
A
VAL
71
1
3
4
A
PRO
82
A
PRO
82
HELX_P
A
GLU
89
A
GLU
89
1
4
8
A
SER
95
A
SER
95
HELX_P
A
GLN
107
A
GLN
107
1
5
13
A
PHE
130
A
PHE
130
HELX_P
A
GLU
137
A
GLU
137
1
6
8
A
CYS
151
A
CYS
151
HELX_P
A
HIS
164
A
HIS
164
1
7
14
A
HIS
184
A
HIS
184
HELX_P
A
MET
194
A
MET
194
1
8
11
A
GLY
216
A
GLY
216
HELX_P
A
TYR
218
A
TYR
218
5
9
3
metalc
2.469
A
ASP
54
A
OD1
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
metalc
2.779
A
ASP
54
A
OD2
ASP
54
1_555
A
CA
227
B
CA
CA
1_555
metalc
2.324
A
ADP
226
D
O1A
ADP
1_555
A
CA
227
B
CA
CA
1_555
metalc
2.203
A
CA
227
B
CA
CA
1_555
A
HOH
363
E
O
HOH
1_555
metalc
2.702
A
CA
227
B
CA
CA
1_555
A
HOH
370
E
O
HOH
1_555
metalc
2.471
A
CA
227
B
CA
CA
1_555
A
HOH
374
E
O
HOH
1_555
metalc
2.559
A
CA
227
B
CA
CA
1_555
A
HOH
380
E
O
HOH
1_555
LIGASE
LIGASE, BIOTIN BIOSYNTHESIS, MAGNESIUM, ATP-BINDING
BIOD_ECOLI
UNP
1
1
P13000
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
1
224
1DAF
1
224
P13000
A
1
1
224
6
2
2
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
199
A
LEU
199
A
ILE
203
A
ILE
203
A
LEU
169
A
LEU
169
A
ASN
175
A
ASN
175
A
PRO
140
A
PRO
140
A
GLY
146
A
GLY
146
A
LYS
2
A
LYS
2
A
GLY
8
A
GLY
8
A
TRP
111
A
TRP
111
A
GLU
115
A
GLU
115
A
THR
33
A
THR
33
A
TYR
36
A
TYR
36
A
VAL
39
A
VAL
39
A
SER
41
A
SER
41
A
TYR
74
A
TYR
74
A
PHE
76
A
PHE
76
A
GLU
44
A
GLU
44
A
THR
46
A
THR
46
A
GLY
49
A
GLY
49
A
ARG
51
A
ARG
51
BINDING SITE FOR RESIDUE CA A 227
A
CA
227
Software
6
BINDING SITE FOR RESIDUE DSD A 225
A
DSD
225
Software
14
BINDING SITE FOR RESIDUE ADP A 226
A
ADP
226
Software
19
A
ASP
54
A
ASP
54
6
1_555
A
ADP
226
D
ADP
6
1_555
A
HOH
363
E
HOH
6
1_555
A
HOH
370
E
HOH
6
1_555
A
HOH
374
E
HOH
6
1_555
A
HOH
380
E
HOH
6
1_555
A
THR
11
A
THR
11
14
1_555
A
LYS
37
A
LYS
37
14
1_555
A
ALA
40
A
ALA
40
14
1_555
A
SER
41
A
SER
41
14
1_555
A
ALA
117
A
ALA
117
14
1_555
A
GLY
118
A
GLY
118
14
1_555
A
GLY
150
A
GLY
150
14
2_555
A
CYS
151
A
CYS
151
14
2_555
A
ILE
152
A
ILE
152
14
2_555
A
ASN
153
A
ASN
153
14
2_555
A
TYR
187
A
TYR
187
14
2_555
A
HOH
230
E
HOH
14
2_555
A
HOH
285
E
HOH
14
1_555
A
HOH
286
E
HOH
14
1_555
A
GLU
12
A
GLU
12
19
1_555
A
VAL
13
A
VAL
13
19
1_555
A
GLY
14
A
GLY
14
19
1_555
A
LYS
15
A
LYS
15
19
1_555
A
THR
16
A
THR
16
19
1_555
A
VAL
17
A
VAL
17
19
1_555
A
ASP
54
A
ASP
54
19
1_555
A
GLU
115
A
GLU
115
19
1_555
A
ASN
175
A
ASN
175
19
1_555
A
ASP
176
A
ASP
176
19
1_555
A
PRO
204
A
PRO
204
19
1_555
A
LEU
206
A
LEU
206
19
1_555
A
PRO
210
A
PRO
210
19
1_555
A
GLU
211
A
GLU
211
19
1_555
A
CA
227
B
CA
19
1_555
A
HOH
286
E
HOH
19
1_555
A
HOH
363
E
HOH
19
1_555
A
HOH
367
E
HOH
19
1_555
A
HOH
369
E
HOH
19
1_555
5
C 1 2 1