0.013661
0.000000
0.004203
0.000000
0.020325
0.000000
0.000000
0.000000
0.016930
0.00000
0.00000
0.00000
Huang, W.
Jia, J.
Schneider, G.
Lindqvist, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
107.10
90.00
73.200
49.200
61.800
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H20 N2 O4
232.277
7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
C
N
89
N
O
N
90
N
O
N
91
N
C
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
C
N
96
R
C
N
97
S
C
N
98
N
C
N
99
N
N
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
N
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
C
N
151
N
O
N
152
N
O
N
153
N
O
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
N
N
174
S
C
N
175
N
C
N
176
N
O
N
177
N
C
Y
178
N
C
Y
179
N
N
Y
180
N
C
Y
181
N
C
Y
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
O
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
S
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
N
N
242
S
C
N
243
N
C
N
244
N
O
N
245
N
C
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
N
271
N
C
N
272
N
S
N
273
N
C
N
274
N
O
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
O
N
332
N
O
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
R
C
N
345
N
O
N
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
N
N
358
S
C
N
359
N
C
N
360
N
O
N
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
Y
365
N
N
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
N
N
385
S
C
N
386
N
C
N
387
N
O
N
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
N
395
N
O
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
N
N
409
S
C
N
410
N
C
N
411
N
O
N
412
N
C
N
413
N
C
N
414
N
C
N
415
N
O
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
Y
175
N
sing
Y
176
N
doub
Y
177
N
doub
N
178
N
sing
Y
179
N
sing
N
180
N
sing
Y
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
doub
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
Y
283
N
doub
Y
284
N
sing
Y
285
N
sing
N
286
N
sing
Y
287
N
doub
N
288
N
sing
Y
289
N
doub
N
290
N
sing
Y
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
Y
352
N
doub
Y
353
N
sing
Y
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
Y
380
N
doub
Y
381
N
sing
Y
382
N
sing
N
383
N
sing
Y
384
N
doub
N
385
N
sing
Y
386
N
doub
N
387
N
sing
Y
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
doub
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
US
Biochemistry
BICHAW
0033
0006-2960
34
10985
10995
10.1021/bi00035a004
7669756
Mechanism of an ATP-dependent carboxylase, dethiobiotin synthetase, based on crystallographic studies of complexes with substrates and a reaction intermediate.
1995
UK
Structure
STRUE6
2005
0969-2126
2
407
Crystal Structure of an ATP-Dependent Carboxylase, Dethiobiotin Synthetase, at 1.65 A Resolution
1994
10.2210/pdb1dai/pdb
pdb_00001dai
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
IMAGE PLATE
1994-02-15
RIGAKU
M
x-ray
1
1.5418
1.0
1.5418
24028.289
DETHIOBIOTIN SYNTHETASE
6.3.3.3
1
man
polymer
232.277
7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
1
syn
non-polymer
18.015
water
135
nat
water
DTBS
no
no
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
2.21
34.
chem_comp_atom
chem_comp_bond
database_2
pdbx_database_status
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1996-06-20
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-05-08
REL
DSD
7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
HOH
water
DSD
225
2
DSD
DSD
225
A
HOH
226
3
HOH
HOH
226
A
HOH
227
3
HOH
HOH
227
A
HOH
228
3
HOH
HOH
228
A
HOH
229
3
HOH
HOH
229
A
HOH
230
3
HOH
HOH
230
A
HOH
231
3
HOH
HOH
231
A
HOH
232
3
HOH
HOH
232
A
HOH
233
3
HOH
HOH
233
A
HOH
234
3
HOH
HOH
234
A
HOH
235
3
HOH
HOH
235
A
HOH
236
3
HOH
HOH
236
A
HOH
237
3
HOH
HOH
237
A
HOH
238
3
HOH
HOH
238
A
HOH
239
3
HOH
HOH
239
A
HOH
240
3
HOH
HOH
240
A
HOH
241
3
HOH
HOH
241
A
HOH
242
3
HOH
HOH
242
A
HOH
243
3
HOH
HOH
243
A
HOH
244
3
HOH
HOH
244
A
HOH
245
3
HOH
HOH
245
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
258
3
HOH
HOH
258
A
HOH
259
3
HOH
HOH
259
A
HOH
260
3
HOH
HOH
260
A
HOH
261
3
HOH
HOH
261
A
HOH
262
3
HOH
HOH
262
A
HOH
263
3
HOH
HOH
263
A
HOH
264
3
HOH
HOH
264
A
HOH
265
3
HOH
HOH
265
A
HOH
266
3
HOH
HOH
266
A
HOH
267
3
HOH
HOH
267
A
HOH
268
3
HOH
HOH
268
A
HOH
269
3
HOH
HOH
269
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
280
3
HOH
HOH
280
A
HOH
281
3
HOH
HOH
281
A
HOH
282
3
HOH
HOH
282
A
HOH
283
3
HOH
HOH
283
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
287
3
HOH
HOH
287
A
HOH
288
3
HOH
HOH
288
A
HOH
289
3
HOH
HOH
289
A
HOH
290
3
HOH
HOH
290
A
HOH
291
3
HOH
HOH
291
A
HOH
292
3
HOH
HOH
292
A
HOH
293
3
HOH
HOH
293
A
HOH
294
3
HOH
HOH
294
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
297
3
HOH
HOH
297
A
HOH
298
3
HOH
HOH
298
A
HOH
299
3
HOH
HOH
299
A
HOH
300
3
HOH
HOH
300
A
HOH
301
3
HOH
HOH
301
A
HOH
302
3
HOH
HOH
302
A
HOH
303
3
HOH
HOH
303
A
HOH
304
3
HOH
HOH
304
A
HOH
305
3
HOH
HOH
305
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
310
3
HOH
HOH
310
A
HOH
311
3
HOH
HOH
311
A
HOH
312
3
HOH
HOH
312
A
HOH
313
3
HOH
HOH
313
A
HOH
314
3
HOH
HOH
314
A
HOH
315
3
HOH
HOH
315
A
HOH
316
3
HOH
HOH
316
A
HOH
317
3
HOH
HOH
317
A
HOH
318
3
HOH
HOH
318
A
HOH
319
3
HOH
HOH
319
A
HOH
320
3
HOH
HOH
320
A
HOH
321
3
HOH
HOH
321
A
HOH
322
3
HOH
HOH
322
A
HOH
323
3
HOH
HOH
323
A
HOH
324
3
HOH
HOH
324
A
HOH
325
3
HOH
HOH
325
A
HOH
326
3
HOH
HOH
326
A
HOH
327
3
HOH
HOH
327
A
HOH
328
3
HOH
HOH
328
A
HOH
329
3
HOH
HOH
329
A
HOH
330
3
HOH
HOH
330
A
HOH
331
3
HOH
HOH
331
A
HOH
332
3
HOH
HOH
332
A
HOH
333
3
HOH
HOH
333
A
HOH
334
3
HOH
HOH
334
A
HOH
335
3
HOH
HOH
335
A
HOH
336
3
HOH
HOH
336
A
HOH
337
3
HOH
HOH
337
A
HOH
338
3
HOH
HOH
338
A
HOH
339
3
HOH
HOH
339
A
HOH
340
3
HOH
HOH
340
A
HOH
341
3
HOH
HOH
341
A
HOH
342
3
HOH
HOH
342
A
HOH
343
3
HOH
HOH
343
A
HOH
344
3
HOH
HOH
344
A
HOH
345
3
HOH
HOH
345
A
HOH
346
3
HOH
HOH
346
A
HOH
347
3
HOH
HOH
347
A
HOH
348
3
HOH
HOH
348
A
HOH
349
3
HOH
HOH
349
A
HOH
350
3
HOH
HOH
350
A
HOH
351
3
HOH
HOH
351
A
HOH
352
3
HOH
HOH
352
A
HOH
353
3
HOH
HOH
353
A
HOH
354
3
HOH
HOH
354
A
HOH
355
3
HOH
HOH
355
A
HOH
356
3
HOH
HOH
356
A
HOH
357
3
HOH
HOH
357
A
HOH
358
3
HOH
HOH
358
A
HOH
359
3
HOH
HOH
359
A
HOH
360
3
HOH
HOH
360
A
SER
1
n
1
SER
1
A
LYS
2
n
2
LYS
2
A
ARG
3
n
3
ARG
3
A
TYR
4
n
4
TYR
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
THR
7
n
7
THR
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
ASP
10
n
10
ASP
10
A
THR
11
n
11
THR
11
A
GLU
12
n
12
GLU
12
A
VAL
13
n
13
VAL
13
A
GLY
14
n
14
GLY
14
A
LYS
15
n
15
LYS
15
A
THR
16
n
16
THR
16
A
VAL
17
n
17
VAL
17
A
ALA
18
n
18
ALA
18
A
SER
19
n
19
SER
19
A
CYS
20
n
20
CYS
20
A
ALA
21
n
21
ALA
21
A
LEU
22
n
22
LEU
22
A
LEU
23
n
23
LEU
23
A
GLN
24
n
24
GLN
24
A
ALA
25
n
25
ALA
25
A
ALA
26
n
26
ALA
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
ALA
29
n
29
ALA
29
A
GLY
30
n
30
GLY
30
A
TYR
31
n
31
TYR
31
A
ARG
32
n
32
ARG
32
A
THR
33
n
33
THR
33
A
ALA
34
n
34
ALA
34
A
GLY
35
n
35
GLY
35
A
TYR
36
n
36
TYR
36
A
LYS
37
n
37
LYS
37
A
PRO
38
n
38
PRO
38
A
VAL
39
n
39
VAL
39
A
ALA
40
n
40
ALA
40
A
SER
41
n
41
SER
41
A
GLY
42
n
42
GLY
42
A
SER
43
n
43
SER
43
A
GLU
44
n
44
GLU
44
A
LYS
45
n
45
LYS
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
GLU
48
n
48
GLU
48
A
GLY
49
n
49
GLY
49
A
LEU
50
n
50
LEU
50
A
ARG
51
n
51
ARG
51
A
ASN
52
n
52
ASN
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
ALA
57
n
57
ALA
57
A
LEU
58
n
58
LEU
58
A
GLN
59
n
59
GLN
59
A
ARG
60
n
60
ARG
60
A
ASN
61
n
61
ASN
61
A
SER
62
n
62
SER
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
GLN
65
n
65
GLN
65
A
LEU
66
n
66
LEU
66
A
ASP
67
n
67
ASP
67
A
TYR
68
n
68
TYR
68
A
ALA
69
n
69
ALA
69
A
THR
70
n
70
THR
70
A
VAL
71
n
71
VAL
71
A
ASN
72
n
72
ASN
72
A
PRO
73
n
73
PRO
73
A
TYR
74
n
74
TYR
74
A
THR
75
n
75
THR
75
A
PHE
76
n
76
PHE
76
A
ALA
77
n
77
ALA
77
A
GLU
78
n
78
GLU
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
SER
81
n
81
SER
81
A
PRO
82
n
82
PRO
82
A
HIS
83
n
83
HIS
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
SER
86
n
86
SER
86
A
ALA
87
n
87
ALA
87
A
GLN
88
n
88
GLN
88
A
GLU
89
n
89
GLU
89
A
GLY
90
n
90
GLY
90
A
ARG
91
n
91
ARG
91
A
PRO
92
n
92
PRO
92
A
ILE
93
n
93
ILE
93
A
GLU
94
n
94
GLU
94
A
SER
95
n
95
SER
95
A
LEU
96
n
96
LEU
96
A
VAL
97
n
97
VAL
97
A
MET
98
n
98
MET
98
A
SER
99
n
99
SER
99
A
ALA
100
n
100
ALA
100
A
GLY
101
n
101
GLY
101
A
LEU
102
n
102
LEU
102
A
ARG
103
n
103
ARG
103
A
ALA
104
n
104
ALA
104
A
LEU
105
n
105
LEU
105
A
GLU
106
n
106
GLU
106
A
GLN
107
n
107
GLN
107
A
GLN
108
n
108
GLN
108
A
ALA
109
n
109
ALA
109
A
ASP
110
n
110
ASP
110
A
TRP
111
n
111
TRP
111
A
VAL
112
n
112
VAL
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
GLU
115
n
115
GLU
115
A
GLY
116
n
116
GLY
116
A
ALA
117
n
117
ALA
117
A
GLY
118
n
118
GLY
118
A
GLY
119
n
119
GLY
119
A
TRP
120
n
120
TRP
120
A
PHE
121
n
121
PHE
121
A
THR
122
n
122
THR
122
A
PRO
123
n
123
PRO
123
A
LEU
124
n
124
LEU
124
A
SER
125
n
125
SER
125
A
ASP
126
n
126
ASP
126
A
THR
127
n
127
THR
127
A
PHE
128
n
128
PHE
128
A
THR
129
n
129
THR
129
A
PHE
130
n
130
PHE
130
A
ALA
131
n
131
ALA
131
A
ASP
132
n
132
ASP
132
A
TRP
133
n
133
TRP
133
A
VAL
134
n
134
VAL
134
A
THR
135
n
135
THR
135
A
GLN
136
n
136
GLN
136
A
GLU
137
n
137
GLU
137
A
GLN
138
n
138
GLN
138
A
LEU
139
n
139
LEU
139
A
PRO
140
n
140
PRO
140
A
VAL
141
n
141
VAL
141
A
ILE
142
n
142
ILE
142
A
LEU
143
n
143
LEU
143
A
VAL
144
n
144
VAL
144
A
VAL
145
n
145
VAL
145
A
GLY
146
n
146
GLY
146
A
VAL
147
n
147
VAL
147
A
LYS
148
n
148
LYS
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
CYS
151
n
151
CYS
151
A
ILE
152
n
152
ILE
152
A
ASN
153
n
153
ASN
153
A
HIS
154
n
154
HIS
154
A
ALA
155
n
155
ALA
155
A
MET
156
n
156
MET
156
A
LEU
157
n
157
LEU
157
A
THR
158
n
158
THR
158
A
ALA
159
n
159
ALA
159
A
GLN
160
n
160
GLN
160
A
VAL
161
n
161
VAL
161
A
ILE
162
n
162
ILE
162
A
GLN
163
n
163
GLN
163
A
HIS
164
n
164
HIS
164
A
ALA
165
n
165
ALA
165
A
GLY
166
n
166
GLY
166
A
LEU
167
n
167
LEU
167
A
THR
168
n
168
THR
168
A
LEU
169
n
169
LEU
169
A
ALA
170
n
170
ALA
170
A
GLY
171
n
171
GLY
171
A
TRP
172
n
172
TRP
172
A
VAL
173
n
173
VAL
173
A
ALA
174
n
174
ALA
174
A
ASN
175
n
175
ASN
175
A
ASP
176
n
176
ASP
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
PRO
179
n
179
PRO
179
A
PRO
180
n
180
PRO
180
A
GLY
181
n
181
GLY
181
A
LYS
182
n
182
LYS
182
A
ARG
183
n
183
ARG
183
A
HIS
184
n
184
HIS
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
TYR
187
n
187
TYR
187
A
MET
188
n
188
MET
188
A
THR
189
n
189
THR
189
A
THR
190
n
190
THR
190
A
LEU
191
n
191
LEU
191
A
THR
192
n
192
THR
192
A
ARG
193
n
193
ARG
193
A
MET
194
n
194
MET
194
A
ILE
195
n
195
ILE
195
A
PRO
196
n
196
PRO
196
A
ALA
197
n
197
ALA
197
A
PRO
198
n
198
PRO
198
A
LEU
199
n
199
LEU
199
A
LEU
200
n
200
LEU
200
A
GLY
201
n
201
GLY
201
A
GLU
202
n
202
GLU
202
A
ILE
203
n
203
ILE
203
A
PRO
204
n
204
PRO
204
A
TRP
205
n
205
TRP
205
A
LEU
206
n
206
LEU
206
A
ALA
207
n
207
ALA
207
A
n
208
208
A
n
209
209
A
n
210
210
A
n
211
211
A
n
212
212
A
ALA
213
n
213
ALA
213
A
ALA
214
n
214
ALA
214
A
THR
215
n
215
THR
215
A
GLY
216
n
216
GLY
216
A
LYS
217
n
217
LYS
217
A
TYR
218
n
218
TYR
218
A
ILE
219
n
219
ILE
219
A
ASN
220
n
220
ASN
220
A
LEU
221
n
221
LEU
221
A
ALA
222
n
222
ALA
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
3110
-9
17640
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
200
A
O
LEU
200
A
N
TRP
172
A
N
TRP
172
A
O
ALA
170
A
O
ALA
170
A
N
VAL
141
A
N
VAL
141
A
O
PRO
140
A
O
PRO
140
A
N
PHE
5
A
N
PHE
5
A
O
LYS
2
A
O
LYS
2
A
N
VAL
112
A
N
VAL
112
A
O
TRP
111
A
O
TRP
111
A
N
ALA
34
A
N
ALA
34
A
O
ALA
40
A
O
ALA
40
A
N
TYR
74
A
N
TYR
74
A
O
GLU
44
A
O
GLU
44
A
N
ARG
51
A
N
ARG
51
1
A
GLU
208
A
GLU
208
1
Y
1
A
ASN
209
A
ASN
209
1
Y
1
A
PRO
210
A
PRO
210
1
Y
1
A
GLU
211
A
GLU
211
1
Y
1
A
ASN
212
A
ASN
212
1
Y
1
-3.26
0.50
120.30
117.04
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
3
3
3
N
1
3.66
0.50
120.30
123.96
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
32
32
32
N
1
4.83
0.50
120.30
125.13
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
51
51
51
N
1
-3.92
0.50
120.30
116.38
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
51
51
51
N
1
3.69
0.50
120.30
123.99
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
60
60
60
N
1
3.95
0.50
120.30
124.25
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
91
91
91
N
1
-3.81
0.50
120.30
116.49
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
91
91
91
N
1
-3.04
0.50
120.30
117.26
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
103
103
103
N
1
5.92
0.80
106.30
112.22
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
111
111
111
N
1
-5.71
0.80
107.30
101.59
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
111
111
111
N
1
6.29
0.80
106.30
112.59
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
120
120
120
N
1
-6.24
0.80
107.30
101.06
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
120
120
120
N
1
5.51
0.80
106.30
111.81
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
133
133
133
N
1
-5.52
0.80
107.30
101.78
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
133
133
133
N
1
7.38
0.80
106.30
113.68
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
172
172
172
N
1
-5.88
0.80
107.30
101.42
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
172
172
172
N
1
3.34
0.50
120.30
123.64
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
183
183
183
N
1
-3.82
0.60
121.00
117.18
A
A
A
CB
CG
CD2
TYR
TYR
TYR
187
187
187
N
1
3.55
0.50
120.30
123.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
193
193
193
N
1
6.68
0.80
106.30
112.98
A
A
A
CD1
CG
CD2
TRP
TRP
TRP
205
205
205
N
1
-6.14
0.80
107.30
101.16
A
A
A
CE2
CD2
CG
TRP
TRP
TRP
205
205
205
N
1
A
A
NE2
CD2
HIS
HIS
154
154
-0.066
0.011
1.373
1.307
N
1
A
PHE
121
-92.57
31.31
22.0
0.1740000
0.1740000
1.64
6.0
18683
1
1.0
1.64
6.0
135
1802
16
0
1651
0.013
2.7
1DAI
19323
1.0
0.0790000
1
2.0
75.
model building
X-PLOR
refinement
X-PLOR
data reduction
R-AXIS
phasing
X-PLOR
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 7-(CARBOXYAMINO)-8-AMINO-NONANOIC ACID
1
N
N
2
N
N
3
N
N
A
LYS
15
A
LYS
15
HELX_P
A
ALA
28
A
ALA
28
1
1
14
A
SER
53
A
SER
53
HELX_P
A
ASN
61
A
ASN
61
1
2
9
A
TYR
68
A
TYR
68
HELX_P
A
VAL
71
A
VAL
71
1
3
4
A
PRO
82
A
PRO
82
HELX_P
A
GLU
89
A
GLU
89
1
4
8
A
SER
95
A
SER
95
HELX_P
A
GLN
107
A
GLN
107
1
5
13
A
PHE
130
A
PHE
130
HELX_P
A
GLU
137
A
GLU
137
1
6
8
A
CYS
151
A
CYS
151
HELX_P
A
HIS
164
A
HIS
164
1
7
14
A
HIS
184
A
HIS
184
HELX_P
A
MET
194
A
MET
194
1
8
11
A
GLY
216
A
GLY
216
HELX_P
A
TYR
218
A
TYR
218
5
9
3
LIGASE
LIGASE, BIOTIN BIOSYNTHESIS, MAGNESIUM, ATP-BINDING
BIOD_ECOLI
UNP
1
1
P13000
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
1
224
1DAI
1
224
P13000
A
1
1
224
6
2
2
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
199
A
LEU
199
A
ILE
203
A
ILE
203
A
LEU
169
A
LEU
169
A
ASN
175
A
ASN
175
A
PRO
140
A
PRO
140
A
GLY
146
A
GLY
146
A
LYS
2
A
LYS
2
A
GLY
8
A
GLY
8
A
TRP
111
A
TRP
111
A
GLU
115
A
GLU
115
A
THR
33
A
THR
33
A
TYR
36
A
TYR
36
A
VAL
39
A
VAL
39
A
SER
41
A
SER
41
A
TYR
74
A
TYR
74
A
PHE
76
A
PHE
76
A
GLU
44
A
GLU
44
A
THR
46
A
THR
46
A
GLY
49
A
GLY
49
A
ARG
51
A
ARG
51
BINDING SITE FOR RESIDUE DSD A 225
A
DSD
225
Software
11
A
LYS
37
A
LYS
37
11
1_555
A
ALA
40
A
ALA
40
11
1_555
A
SER
41
A
SER
41
11
1_555
A
GLY
150
A
GLY
150
11
2_555
A
CYS
151
A
CYS
151
11
2_555
A
ILE
152
A
ILE
152
11
2_555
A
ASN
153
A
ASN
153
11
2_555
A
TYR
187
A
TYR
187
11
2_555
A
HOH
321
C
HOH
11
1_555
A
HOH
322
C
HOH
11
1_555
A
HOH
333
C
HOH
11
1_555
5
C 1 2 1