0.013759 0.000000 0.004096 0.000000 0.020751 0.000000 0.000000 0.000000 0.017085 0.00000 0.00000 0.00000 Kaeck, H. Gibson, K.J. Lindqvist, Y. Schneider, G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 106.58 90.00 72.680 48.190 61.070 C10 H15 N5 O10 P2 427.201 n ADENOSINE-5'-DIPHOSPHATE non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H21 N2 O7 P 312.257 MIXED CARBAMIC PHOSPHORIC ACID ANHYDRIDE OF 7,8-DIAMINONONANIC ACID non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 95 5495 5500 10.1073/pnas.95.10.5495 9576910 Snapshot of a phosphorylated substrate intermediate by kinetic crystallography. 1998 10.2210/pdb1dak/pdb pdb_00001dak 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 1997-10 PRINCETON 2K M x-ray 1 0.7606 1.0 ID09 ESRF 0.7606 SYNCHROTRON ESRF BEAMLINE ID09 24028.289 DETHIOBIOTIN SYNTHETASE 6.3.3.3 1 man polymer 94.971 PHOSPHATE ION 1 syn non-polymer 24.305 MAGNESIUM ION 2 syn non-polymer 312.257 MIXED CARBAMIC PHOSPHORIC ACID ANHYDRIDE OF 7,8-DIAMINONONANIC ACID 1 syn non-polymer 427.201 ADENOSINE-5'-DIPHOSPHATE 1 syn non-polymer 18.015 water 216 nat water no no SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample CYTOPLASM 562 Escherichia coli CYTOPLASM BIOD 562 Escherichia coli PLASMID 1 2.13 42.30 8.5 pH 8.5 database_2 pdbx_database_status pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Database references Derived calculations Other Refinement description 1 0 1999-04-06 1 1 2008-03-24 1 2 2011-07-13 1 3 2023-08-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1998-03-31 REL PO4 PHOSPHATE ION MG MAGNESIUM ION DPU MIXED CARBAMIC PHOSPHORIC ACID ANHYDRIDE OF 7,8-DIAMINONONANIC ACID ADP ADENOSINE-5'-DIPHOSPHATE HOH water 1DAH PDB ENTRY 1DAH, WITH NON-PROTEIN ATOMS EXCLUDED PDB experimental model PO4 803 2 PO4 PO4 803 A MG 901 3 MG MG 901 A MG 902 3 MG MG 902 A DPP 801 4 DPU DPU 801 A ADP 802 5 ADP ADP 802 A HOH 301 6 HOH HOH 301 A HOH 302 6 HOH HOH 302 A HOH 304 6 HOH HOH 304 A HOH 306 6 HOH HOH 306 A HOH 307 6 HOH HOH 307 A HOH 308 6 HOH HOH 308 A HOH 309 6 HOH HOH 309 A HOH 310 6 HOH HOH 310 A HOH 311 6 HOH HOH 311 A HOH 314 6 HOH HOH 314 A HOH 315 6 HOH HOH 315 A HOH 316 6 HOH HOH 316 A HOH 317 6 HOH HOH 317 A HOH 321 6 HOH HOH 321 A HOH 322 6 HOH HOH 322 A HOH 323 6 HOH HOH 323 A HOH 325 6 HOH HOH 325 A HOH 326 6 HOH HOH 326 A HOH 327 6 HOH HOH 327 A HOH 329 6 HOH HOH 329 A HOH 330 6 HOH HOH 330 A HOH 331 6 HOH HOH 331 A HOH 332 6 HOH HOH 332 A HOH 338 6 HOH HOH 338 A HOH 339 6 HOH HOH 339 A HOH 343 6 HOH HOH 343 A HOH 344 6 HOH HOH 344 A HOH 345 6 HOH HOH 345 A HOH 348 6 HOH HOH 348 A HOH 349 6 HOH HOH 349 A HOH 350 6 HOH HOH 350 A HOH 353 6 HOH HOH 353 A HOH 356 6 HOH HOH 356 A HOH 357 6 HOH HOH 357 A HOH 358 6 HOH HOH 358 A HOH 359 6 HOH HOH 359 A HOH 360 6 HOH HOH 360 A HOH 361 6 HOH HOH 361 A HOH 362 6 HOH HOH 362 A HOH 363 6 HOH HOH 363 A HOH 366 6 HOH HOH 366 A HOH 367 6 HOH HOH 367 A HOH 368 6 HOH HOH 368 A HOH 369 6 HOH HOH 369 A HOH 370 6 HOH HOH 370 A HOH 371 6 HOH HOH 371 A HOH 372 6 HOH HOH 372 A HOH 373 6 HOH HOH 373 A HOH 376 6 HOH HOH 376 A HOH 379 6 HOH HOH 379 A HOH 380 6 HOH HOH 380 A HOH 381 6 HOH HOH 381 A HOH 383 6 HOH HOH 383 A HOH 385 6 HOH HOH 385 A HOH 386 6 HOH HOH 386 A HOH 388 6 HOH HOH 388 A HOH 393 6 HOH HOH 393 A HOH 395 6 HOH HOH 395 A HOH 396 6 HOH HOH 396 A HOH 398 6 HOH HOH 398 A HOH 400 6 HOH HOH 400 A HOH 402 6 HOH HOH 402 A HOH 404 6 HOH HOH 404 A HOH 406 6 HOH HOH 406 A HOH 412 6 HOH HOH 412 A HOH 416 6 HOH HOH 416 A HOH 417 6 HOH HOH 417 A HOH 421 6 HOH HOH 421 A HOH 423 6 HOH HOH 423 A HOH 425 6 HOH HOH 425 A HOH 426 6 HOH HOH 426 A HOH 427 6 HOH HOH 427 A HOH 429 6 HOH HOH 429 A HOH 430 6 HOH HOH 430 A HOH 432 6 HOH HOH 432 A HOH 433 6 HOH HOH 433 A HOH 434 6 HOH HOH 434 A HOH 438 6 HOH HOH 438 A HOH 440 6 HOH HOH 440 A HOH 441 6 HOH HOH 441 A HOH 444 6 HOH HOH 444 A HOH 446 6 HOH HOH 446 A HOH 447 6 HOH HOH 447 A HOH 457 6 HOH HOH 457 A HOH 460 6 HOH HOH 460 A HOH 463 6 HOH HOH 463 A HOH 466 6 HOH HOH 466 A HOH 472 6 HOH HOH 472 A HOH 474 6 HOH HOH 474 A HOH 477 6 HOH HOH 477 A HOH 481 6 HOH HOH 481 A HOH 492 6 HOH HOH 492 A HOH 493 6 HOH HOH 493 A HOH 496 6 HOH HOH 496 A HOH 499 6 HOH HOH 499 A HOH 500 6 HOH HOH 500 A HOH 504 6 HOH HOH 504 A HOH 505 6 HOH HOH 505 A HOH 506 6 HOH HOH 506 A HOH 507 6 HOH HOH 507 A HOH 511 6 HOH HOH 511 A HOH 513 6 HOH HOH 513 A HOH 514 6 HOH HOH 514 A HOH 516 6 HOH HOH 516 A HOH 518 6 HOH HOH 518 A HOH 521 6 HOH HOH 521 A HOH 522 6 HOH HOH 522 A HOH 523 6 HOH HOH 523 A HOH 524 6 HOH HOH 524 A HOH 526 6 HOH HOH 526 A HOH 530 6 HOH HOH 530 A HOH 531 6 HOH HOH 531 A HOH 532 6 HOH HOH 532 A HOH 533 6 HOH HOH 533 A HOH 535 6 HOH HOH 535 A HOH 536 6 HOH HOH 536 A HOH 538 6 HOH HOH 538 A HOH 543 6 HOH HOH 543 A HOH 544 6 HOH HOH 544 A HOH 546 6 HOH HOH 546 A HOH 547 6 HOH HOH 547 A HOH 551 6 HOH HOH 551 A HOH 559 6 HOH HOH 559 A HOH 560 6 HOH HOH 560 A HOH 561 6 HOH HOH 561 A HOH 569 6 HOH HOH 569 A HOH 580 6 HOH HOH 580 A HOH 586 6 HOH HOH 586 A HOH 587 6 HOH HOH 587 A HOH 589 6 HOH HOH 589 A HOH 590 6 HOH HOH 590 A HOH 595 6 HOH HOH 595 A HOH 596 6 HOH HOH 596 A HOH 597 6 HOH HOH 597 A HOH 598 6 HOH HOH 598 A HOH 600 6 HOH HOH 600 A HOH 602 6 HOH HOH 602 A HOH 604 6 HOH HOH 604 A HOH 607 6 HOH HOH 607 A HOH 610 6 HOH HOH 610 A HOH 611 6 HOH HOH 611 A HOH 612 6 HOH HOH 612 A HOH 614 6 HOH HOH 614 A HOH 615 6 HOH HOH 615 A HOH 616 6 HOH HOH 616 A HOH 622 6 HOH HOH 622 A HOH 624 6 HOH HOH 624 A HOH 652 6 HOH HOH 652 A HOH 653 6 HOH HOH 653 A HOH 655 6 HOH HOH 655 A HOH 656 6 HOH HOH 656 A HOH 663 6 HOH HOH 663 A HOH 664 6 HOH HOH 664 A HOH 666 6 HOH HOH 666 A HOH 676 6 HOH HOH 676 A HOH 679 6 HOH HOH 679 A HOH 684 6 HOH HOH 684 A HOH 685 6 HOH HOH 685 A HOH 693 6 HOH HOH 693 A HOH 694 6 HOH HOH 694 A HOH 700 6 HOH HOH 700 A HOH 703 6 HOH HOH 703 A HOH 704 6 HOH HOH 704 A HOH 706 6 HOH HOH 706 A HOH 707 6 HOH HOH 707 A HOH 709 6 HOH HOH 709 A HOH 710 6 HOH HOH 710 A HOH 711 6 HOH HOH 711 A HOH 712 6 HOH HOH 712 A HOH 713 6 HOH HOH 713 A HOH 714 6 HOH HOH 714 A HOH 717 6 HOH HOH 717 A HOH 719 6 HOH HOH 719 A HOH 720 6 HOH HOH 720 A HOH 722 6 HOH HOH 722 A HOH 723 6 HOH HOH 723 A HOH 724 6 HOH HOH 724 A HOH 729 6 HOH HOH 729 A HOH 731 6 HOH HOH 731 A HOH 734 6 HOH HOH 734 A HOH 736 6 HOH HOH 736 A HOH 737 6 HOH HOH 737 A HOH 742 6 HOH HOH 742 A HOH 745 6 HOH HOH 745 A HOH 746 6 HOH HOH 746 A HOH 748 6 HOH HOH 748 A HOH 751 6 HOH HOH 751 A HOH 754 6 HOH HOH 754 A HOH 755 6 HOH HOH 755 A HOH 756 6 HOH HOH 756 A HOH 757 6 HOH HOH 757 A HOH 758 6 HOH HOH 758 A HOH 759 6 HOH HOH 759 A HOH 760 6 HOH HOH 760 A HOH 761 6 HOH HOH 761 A HOH 762 6 HOH HOH 762 A HOH 763 6 HOH HOH 763 A HOH 764 6 HOH HOH 764 A HOH 767 6 HOH HOH 767 A HOH 768 6 HOH HOH 768 A HOH 769 6 HOH HOH 769 A HOH 773 6 HOH HOH 773 A HOH 775 6 HOH HOH 775 A HOH 778 6 HOH HOH 778 A HOH 779 6 HOH HOH 779 A HOH 780 6 HOH HOH 780 A HOH 781 6 HOH HOH 781 A HOH 783 6 HOH HOH 783 A HOH 784 6 HOH HOH 784 A HOH 788 6 HOH HOH 788 A HOH 789 6 HOH HOH 789 A HOH 790 6 HOH HOH 790 A HOH 791 6 HOH HOH 791 A HOH 792 6 HOH HOH 792 A HOH 793 6 HOH HOH 793 A HOH 794 6 HOH HOH 794 A SER 1 n 1 SER 1 A LYS 2 n 2 LYS 2 A ARG 3 n 3 ARG 3 A TYR 4 n 4 TYR 4 A PHE 5 n 5 PHE 5 A VAL 6 n 6 VAL 6 A THR 7 n 7 THR 7 A GLY 8 n 8 GLY 8 A THR 9 n 9 THR 9 A ASP 10 n 10 ASP 10 A THR 11 n 11 THR 11 A GLU 12 n 12 GLU 12 A VAL 13 n 13 VAL 13 A GLY 14 n 14 GLY 14 A LYS 15 n 15 LYS 15 A THR 16 n 16 THR 16 A VAL 17 n 17 VAL 17 A ALA 18 n 18 ALA 18 A SER 19 n 19 SER 19 A CYS 20 n 20 CYS 20 A ALA 21 n 21 ALA 21 A LEU 22 n 22 LEU 22 A LEU 23 n 23 LEU 23 A GLN 24 n 24 GLN 24 A ALA 25 n 25 ALA 25 A ALA 26 n 26 ALA 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A ALA 29 n 29 ALA 29 A GLY 30 n 30 GLY 30 A TYR 31 n 31 TYR 31 A ARG 32 n 32 ARG 32 A THR 33 n 33 THR 33 A ALA 34 n 34 ALA 34 A GLY 35 n 35 GLY 35 A TYR 36 n 36 TYR 36 A LYS 37 n 37 LYS 37 A PRO 38 n 38 PRO 38 A VAL 39 n 39 VAL 39 A ALA 40 n 40 ALA 40 A SER 41 n 41 SER 41 A GLY 42 n 42 GLY 42 A SER 43 n 43 SER 43 A GLU 44 n 44 GLU 44 A LYS 45 n 45 LYS 45 A THR 46 n 46 THR 46 A PRO 47 n 47 PRO 47 A GLU 48 n 48 GLU 48 A GLY 49 n 49 GLY 49 A LEU 50 n 50 LEU 50 A ARG 51 n 51 ARG 51 A ASN 52 n 52 ASN 52 A SER 53 n 53 SER 53 A ASP 54 n 54 ASP 54 A ALA 55 n 55 ALA 55 A LEU 56 n 56 LEU 56 A ALA 57 n 57 ALA 57 A LEU 58 n 58 LEU 58 A GLN 59 n 59 GLN 59 A ARG 60 n 60 ARG 60 A ASN 61 n 61 ASN 61 A SER 62 n 62 SER 62 A SER 63 n 63 SER 63 A LEU 64 n 64 LEU 64 A GLN 65 n 65 GLN 65 A LEU 66 n 66 LEU 66 A ASP 67 n 67 ASP 67 A TYR 68 n 68 TYR 68 A ALA 69 n 69 ALA 69 A THR 70 n 70 THR 70 A VAL 71 n 71 VAL 71 A ASN 72 n 72 ASN 72 A PRO 73 n 73 PRO 73 A TYR 74 n 74 TYR 74 A THR 75 n 75 THR 75 A PHE 76 n 76 PHE 76 A ALA 77 n 77 ALA 77 A GLU 78 n 78 GLU 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A SER 81 n 81 SER 81 A PRO 82 n 82 PRO 82 A HIS 83 n 83 HIS 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A SER 86 n 86 SER 86 A ALA 87 n 87 ALA 87 A GLN 88 n 88 GLN 88 A GLU 89 n 89 GLU 89 A GLY 90 n 90 GLY 90 A ARG 91 n 91 ARG 91 A PRO 92 n 92 PRO 92 A ILE 93 n 93 ILE 93 A GLU 94 n 94 GLU 94 A SER 95 n 95 SER 95 A LEU 96 n 96 LEU 96 A VAL 97 n 97 VAL 97 A MET 98 n 98 MET 98 A SER 99 n 99 SER 99 A ALA 100 n 100 ALA 100 A GLY 101 n 101 GLY 101 A LEU 102 n 102 LEU 102 A ARG 103 n 103 ARG 103 A ALA 104 n 104 ALA 104 A LEU 105 n 105 LEU 105 A GLU 106 n 106 GLU 106 A GLN 107 n 107 GLN 107 A GLN 108 n 108 GLN 108 A ALA 109 n 109 ALA 109 A ASP 110 n 110 ASP 110 A TRP 111 n 111 TRP 111 A VAL 112 n 112 VAL 112 A LEU 113 n 113 LEU 113 A VAL 114 n 114 VAL 114 A GLU 115 n 115 GLU 115 A GLY 116 n 116 GLY 116 A ALA 117 n 117 ALA 117 A GLY 118 n 118 GLY 118 A GLY 119 n 119 GLY 119 A TRP 120 n 120 TRP 120 A PHE 121 n 121 PHE 121 A THR 122 n 122 THR 122 A PRO 123 n 123 PRO 123 A LEU 124 n 124 LEU 124 A SER 125 n 125 SER 125 A ASP 126 n 126 ASP 126 A THR 127 n 127 THR 127 A PHE 128 n 128 PHE 128 A THR 129 n 129 THR 129 A PHE 130 n 130 PHE 130 A ALA 131 n 131 ALA 131 A ASP 132 n 132 ASP 132 A TRP 133 n 133 TRP 133 A VAL 134 n 134 VAL 134 A THR 135 n 135 THR 135 A GLN 136 n 136 GLN 136 A GLU 137 n 137 GLU 137 A GLN 138 n 138 GLN 138 A LEU 139 n 139 LEU 139 A PRO 140 n 140 PRO 140 A VAL 141 n 141 VAL 141 A ILE 142 n 142 ILE 142 A LEU 143 n 143 LEU 143 A VAL 144 n 144 VAL 144 A VAL 145 n 145 VAL 145 A GLY 146 n 146 GLY 146 A VAL 147 n 147 VAL 147 A LYS 148 n 148 LYS 148 A LEU 149 n 149 LEU 149 A GLY 150 n 150 GLY 150 A CYS 151 n 151 CYS 151 A ILE 152 n 152 ILE 152 A ASN 153 n 153 ASN 153 A HIS 154 n 154 HIS 154 A ALA 155 n 155 ALA 155 A MET 156 n 156 MET 156 A LEU 157 n 157 LEU 157 A THR 158 n 158 THR 158 A ALA 159 n 159 ALA 159 A GLN 160 n 160 GLN 160 A VAL 161 n 161 VAL 161 A ILE 162 n 162 ILE 162 A GLN 163 n 163 GLN 163 A HIS 164 n 164 HIS 164 A ALA 165 n 165 ALA 165 A GLY 166 n 166 GLY 166 A LEU 167 n 167 LEU 167 A THR 168 n 168 THR 168 A LEU 169 n 169 LEU 169 A ALA 170 n 170 ALA 170 A GLY 171 n 171 GLY 171 A TRP 172 n 172 TRP 172 A VAL 173 n 173 VAL 173 A ALA 174 n 174 ALA 174 A ASN 175 n 175 ASN 175 A ASP 176 n 176 ASP 176 A VAL 177 n 177 VAL 177 A THR 178 n 178 THR 178 A PRO 179 n 179 PRO 179 A PRO 180 n 180 PRO 180 A GLY 181 n 181 GLY 181 A LYS 182 n 182 LYS 182 A ARG 183 n 183 ARG 183 A HIS 184 n 184 HIS 184 A ALA 185 n 185 ALA 185 A GLU 186 n 186 GLU 186 A TYR 187 n 187 TYR 187 A MET 188 n 188 MET 188 A THR 189 n 189 THR 189 A THR 190 n 190 THR 190 A LEU 191 n 191 LEU 191 A THR 192 n 192 THR 192 A ARG 193 n 193 ARG 193 A MET 194 n 194 MET 194 A ILE 195 n 195 ILE 195 A PRO 196 n 196 PRO 196 A ALA 197 n 197 ALA 197 A PRO 198 n 198 PRO 198 A LEU 199 n 199 LEU 199 A LEU 200 n 200 LEU 200 A GLY 201 n 201 GLY 201 A GLU 202 n 202 GLU 202 A ILE 203 n 203 ILE 203 A PRO 204 n 204 PRO 204 A TRP 205 n 205 TRP 205 A LEU 206 n 206 LEU 206 A ALA 207 n 207 ALA 207 A GLU 208 n 208 GLU 208 A ASN 209 n 209 ASN 209 A PRO 210 n 210 PRO 210 A GLU 211 n 211 GLU 211 A ASN 212 n 212 ASN 212 A ALA 213 n 213 ALA 213 A ALA 214 n 214 ALA 214 A THR 215 n 215 THR 215 A GLY 216 n 216 GLY 216 A LYS 217 n 217 LYS 217 A TYR 218 n 218 TYR 218 A ILE 219 n 219 ILE 219 A ASN 220 n 220 ASN 220 A LEU 221 n 221 LEU 221 A ALA 222 n 222 ALA 222 A LEU 223 n 223 LEU 223 A LEU 224 n 224 LEU 224 A author_and_software_defined_assembly PISA,PQS 2 dimeric 6950 -106 16690 A THR 16 A OG1 THR 16 1_555 A MG 901 C MG MG 1_555 A ASP 54 A OD2 ASP 54 1_555 82.1 A THR 16 A OG1 THR 16 1_555 A MG 901 C MG MG 1_555 A GLU 115 A OE2 GLU 115 1_555 79.3 A ASP 54 A OD2 ASP 54 1_555 A MG 901 C MG MG 1_555 A GLU 115 A OE2 GLU 115 1_555 91.4 A THR 16 A OG1 THR 16 1_555 A MG 901 C MG MG 1_555 A HOH 444 G O HOH 1_555 94.8 A ASP 54 A OD2 ASP 54 1_555 A MG 901 C MG MG 1_555 A HOH 444 G O HOH 1_555 81.2 A GLU 115 A OE2 GLU 115 1_555 A MG 901 C MG MG 1_555 A HOH 444 G O HOH 1_555 171.1 A THR 16 A OG1 THR 16 1_555 A MG 901 C MG MG 1_555 A DPU 801 E O2B DPU 1_555 161.3 A ASP 54 A OD2 ASP 54 1_555 A MG 901 C MG MG 1_555 A DPU 801 E O2B DPU 1_555 89.6 A GLU 115 A OE2 GLU 115 1_555 A MG 901 C MG MG 1_555 A DPU 801 E O2B DPU 1_555 84.2 A HOH 444 G O HOH 1_555 A MG 901 C MG MG 1_555 A DPU 801 E O2B DPU 1_555 100.5 A THR 16 A OG1 THR 16 1_555 A MG 901 C MG MG 1_555 A ADP 802 F O3B ADP 1_555 92.6 A ASP 54 A OD2 ASP 54 1_555 A MG 901 C MG MG 1_555 A ADP 802 F O3B ADP 1_555 160.8 A GLU 115 A OE2 GLU 115 1_555 A MG 901 C MG MG 1_555 A ADP 802 F O3B ADP 1_555 105.8 A HOH 444 G O HOH 1_555 A MG 901 C MG MG 1_555 A ADP 802 F O3B ADP 1_555 80.9 A DPU 801 E O2B DPU 1_555 A MG 901 C MG MG 1_555 A ADP 802 F O3B ADP 1_555 100.4 A HOH 429 G O HOH 1_555 A MG 902 D MG MG 1_555 A HOH 444 G O HOH 1_555 88.1 A HOH 429 G O HOH 1_555 A MG 902 D MG MG 1_555 A HOH 559 G O HOH 1_555 82.5 A HOH 444 G O HOH 1_555 A MG 902 D MG MG 1_555 A HOH 559 G O HOH 1_555 170.6 A HOH 429 G O HOH 1_555 A MG 902 D MG MG 1_555 A HOH 754 G O HOH 1_555 81.8 A HOH 444 G O HOH 1_555 A MG 902 D MG MG 1_555 A HOH 754 G O HOH 1_555 95.6 A HOH 559 G O HOH 1_555 A MG 902 D MG MG 1_555 A HOH 754 G O HOH 1_555 84.2 A HOH 429 G O HOH 1_555 A MG 902 D MG MG 1_555 A DPU 801 E O3B DPU 1_555 167.7 A HOH 444 G O HOH 1_555 A MG 902 D MG MG 1_555 A DPU 801 E O3B DPU 1_555 99.1 A HOH 559 G O HOH 1_555 A MG 902 D MG MG 1_555 A DPU 801 E O3B DPU 1_555 90.3 A HOH 754 G O HOH 1_555 A MG 902 D MG MG 1_555 A DPU 801 E O3B DPU 1_555 87.6 A HOH 429 G O HOH 1_555 A MG 902 D MG MG 1_555 A ADP 802 F O2B ADP 1_555 94.4 A HOH 444 G O HOH 1_555 A MG 902 D MG MG 1_555 A ADP 802 F O2B ADP 1_555 84.9 A HOH 559 G O HOH 1_555 A MG 902 D MG MG 1_555 A ADP 802 F O2B ADP 1_555 94.6 A HOH 754 G O HOH 1_555 A MG 902 D MG MG 1_555 A ADP 802 F O2B ADP 1_555 176.1 A DPU 801 E O3B DPU 1_555 A MG 902 D MG MG 1_555 A ADP 802 F O2B ADP 1_555 96.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_555 -x,y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 200 A O LEU 200 A N TRP 172 A N TRP 172 A O ALA 170 A O ALA 170 A N VAL 141 A N VAL 141 A O PRO 140 A O PRO 140 A N PHE 5 A N PHE 5 A O LYS 2 A O LYS 2 A N VAL 112 A N VAL 112 A O TRP 111 A O TRP 111 A N ALA 34 A N ALA 34 A O ALA 40 A O ALA 40 A N TYR 74 A N TYR 74 A O GLU 44 A O GLU 44 A N ARG 51 A N ARG 51 1 A ASP 10 -170.56 -176.17 1 A ASN 209 28.62 74.49 13.6 0.2100000 0.1840000 1.6 20 1505 29418 5.1 99.0 RANDOM 1 THROUGHOUT 0.0 DIFFERENCE FOURIER PDB ENTRY 1DAH, WITH NON-PROTEIN ATOMS EXCLUDED 1.6 20 216 1962 54 0 1692 0.006 0.020 0.020 0.040 0.021 0.050 0.862 2.000 1.335 3.000 1.227 2.000 1.949 3.000 0.0165 0.081 0.150 0.172 0.300 0.258 0.300 3.1 7.0 15.9 15.0 1.6 25.0 1DAK 86120 0.0780000 1 16 3.2 99.0 1.6 1.66 2.8 0.4300000 1 2.6 92.4 model building CCP4 refinement REFMAC data reduction DENZO data scaling SCALEPACK phasing CCP4 DETHIOBIOTIN SYNTHETASE FROM ESCHERICHIA COLI, COMPLEX REACTION INTERMEDIATE ADP AND MIXED ANHYDRIDE 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N 6 N N A LYS 15 A LYS 15 HELX_P A ALA 28 A ALA 28 1 1 14 A SER 53 A SER 53 HELX_P A ARG 60 A ARG 60 1 2 8 A TYR 68 A TYR 68 HELX_P A VAL 71 A VAL 71 1 3 4 A PRO 82 A PRO 82 HELX_P A GLU 89 A GLU 89 1 4 8 A SER 95 A SER 95 HELX_P A GLN 107 A GLN 107 1 5 13 A PHE 130 A PHE 130 HELX_P A GLU 137 A GLU 137 1 6 8 A CYS 151 A CYS 151 HELX_P A HIS 164 A HIS 164 1 7 14 A HIS 184 A HIS 184 HELX_P A MET 194 A MET 194 1 8 11 A PRO 210 A PRO 210 HELX_P A ASN 212 A ASN 212 5 9 3 A GLY 216 A GLY 216 HELX_P A TYR 218 A TYR 218 5 10 3 metalc 2.256 A THR 16 A OG1 THR 16 1_555 A MG 901 C MG MG 1_555 metalc 2.141 A ASP 54 A OD2 ASP 54 1_555 A MG 901 C MG MG 1_555 metalc 2.158 A GLU 115 A OE2 GLU 115 1_555 A MG 901 C MG MG 1_555 metalc 2.174 A HOH 429 G O HOH 1_555 A MG 902 D MG MG 1_555 metalc 2.263 A HOH 444 G O HOH 1_555 A MG 901 C MG MG 1_555 metalc 2.064 A HOH 444 G O HOH 1_555 A MG 902 D MG MG 1_555 metalc 2.255 A HOH 559 G O HOH 1_555 A MG 902 D MG MG 1_555 metalc 2.103 A HOH 754 G O HOH 1_555 A MG 902 D MG MG 1_555 metalc 2.189 A DPU 801 E O2B DPU 1_555 A MG 901 C MG MG 1_555 metalc 2.109 A DPU 801 E O3B DPU 1_555 A MG 902 D MG MG 1_555 metalc 2.011 A ADP 802 F O3B ADP 1_555 A MG 901 C MG MG 1_555 metalc 2.101 A ADP 802 F O2B ADP 1_555 A MG 902 D MG MG 1_555 LIGASE PHOSHPORYL TRANSFER, BIOTIN BIOSYNTHESIS, LIGASE, KINETIC CRYSTALLOGRAPHY BIOD_ECOLI UNP 1 1 P13000 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL 1 224 1DAK 1 224 P13000 A 1 1 224 6 2 2 parallel parallel parallel parallel parallel parallel anti-parallel A LEU 199 A LEU 199 A ILE 203 A ILE 203 A LEU 169 A LEU 169 A ASN 175 A ASN 175 A PRO 140 A PRO 140 A GLY 146 A GLY 146 A LYS 2 A LYS 2 A GLY 8 A GLY 8 A TRP 111 A TRP 111 A GLU 115 A GLU 115 A THR 33 A THR 33 A TYR 36 A TYR 36 A VAL 39 A VAL 39 A SER 41 A SER 41 A TYR 74 A TYR 74 A PHE 76 A PHE 76 A SER 43 A SER 43 A THR 46 A THR 46 A GLY 49 A GLY 49 A ASN 52 A ASN 52 BINDING SITE FOR RESIDUE PO4 A 803 A PO4 803 Software 8 BINDING SITE FOR RESIDUE MG A 901 A MG 901 Software 7 BINDING SITE FOR RESIDUE MG A 902 A MG 902 Software 7 BINDING SITE FOR RESIDUE DPU A 801 A DPU 801 Software 23 BINDING SITE FOR RESIDUE ADP A 802 A ADP 802 Software 22 A LYS 148 A LYS 148 8 1_555 A LEU 149 A LEU 149 8 1_555 A ARG 183 A ARG 183 8 1_555 A HIS 184 A HIS 184 8 1_555 A HOH 767 G HOH 8 2_555 A HOH 768 G HOH 8 1_555 A HOH 769 G HOH 8 1_555 A HOH 792 G HOH 8 1_555 A THR 16 A THR 16 7 1_555 A ASP 54 A ASP 54 7 1_555 A GLU 115 A GLU 115 7 1_555 A HOH 444 G HOH 7 1_555 A DPU 801 E DPU 7 1_555 A ADP 802 F ADP 7 1_555 A MG 902 D MG 7 1_555 A HOH 429 G HOH 7 1_555 A HOH 444 G HOH 7 1_555 A HOH 559 G HOH 7 1_555 A HOH 754 G HOH 7 1_555 A DPU 801 E DPU 7 1_555 A ADP 802 F ADP 7 1_555 A MG 901 C MG 7 1_555 A THR 11 A THR 11 23 1_555 A LYS 15 A LYS 15 23 1_555 A LYS 37 A LYS 37 23 1_555 A ALA 40 A ALA 40 23 1_555 A SER 41 A SER 41 23 1_555 A ASP 54 A ASP 54 23 1_555 A PRO 79 A PRO 79 23 1_555 A GLU 115 A GLU 115 23 1_555 A ALA 117 A ALA 117 23 1_555 A GLY 118 A GLY 118 23 1_555 A GLY 150 A GLY 150 23 2_555 A CYS 151 A CYS 151 23 2_555 A ILE 152 A ILE 152 23 2_555 A ASN 153 A ASN 153 23 2_555 A TYR 187 A TYR 187 23 2_555 A HOH 559 G HOH 23 1_555 A HOH 655 G HOH 23 2_555 A HOH 717 G HOH 23 1_555 A HOH 754 G HOH 23 1_555 A HOH 755 G HOH 23 1_555 A ADP 802 F ADP 23 1_555 A MG 901 C MG 23 1_555 A MG 902 D MG 23 1_555 A GLU 12 A GLU 12 22 1_555 A VAL 13 A VAL 13 22 1_555 A GLY 14 A GLY 14 22 1_555 A LYS 15 A LYS 15 22 1_555 A THR 16 A THR 16 22 1_555 A VAL 17 A VAL 17 22 1_555 A GLU 115 A GLU 115 22 1_555 A ASN 175 A ASN 175 22 1_555 A ASP 176 A ASP 176 22 1_555 A PRO 204 A PRO 204 22 1_555 A TRP 205 A TRP 205 22 1_555 A LEU 206 A LEU 206 22 1_555 A PRO 210 A PRO 210 22 1_555 A GLU 211 A GLU 211 22 1_555 A HOH 429 G HOH 22 1_555 A HOH 444 G HOH 22 1_555 A HOH 711 G HOH 22 1_555 A HOH 714 G HOH 22 1_555 A HOH 756 G HOH 22 1_555 A DPU 801 E DPU 22 1_555 A MG 901 C MG 22 1_555 A MG 902 D MG 22 1_555 5 C 1 2 1