0.013755
0.000000
0.004127
0.000000
0.020450
0.000000
0.000000
0.000000
0.017087
0.00000
0.00000
0.00000
Kaeck, H.
Sandmark, J.
Gibson, K.J.
Schneider, G.
Lindqvist, Y.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
106.70
90.00
72.700
48.900
61.100
C10 H15 N5 O10 P2
427.201
n
ADENOSINE-5'-DIPHOSPHATE
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H18 N2 O3
214.262
6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID
D-DESTHIOBIOTIN
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
P
N
2
N
O
N
3
N
O
N
4
N
O
N
5
S
P
N
6
N
O
N
7
N
O
N
8
N
O
N
9
N
O
N
10
N
C
N
11
R
C
N
12
N
O
N
13
S
C
N
14
N
O
N
15
R
C
N
16
N
O
N
17
R
C
Y
18
N
N
Y
19
N
C
Y
20
N
N
Y
21
N
C
Y
22
N
C
N
23
N
N
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
N
N
44
S
C
N
45
N
C
N
46
N
O
N
47
N
C
N
48
N
O
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
N
N
57
S
C
N
58
N
C
N
59
N
O
N
60
N
C
N
61
N
C
N
62
N
C
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
N
N
67
N
O
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
O
N
90
N
N
N
91
N
O
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
N
N
101
S
C
N
102
N
C
N
103
N
O
N
104
N
C
N
105
N
C
N
106
N
O
N
107
N
O
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
R
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
S
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
C
N
131
N
O
N
132
N
N
N
133
R
C
N
134
S
C
N
135
N
N
N
136
N
C
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
O
N
191
N
O
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
N
N
213
S
C
N
214
N
C
N
215
N
O
N
216
N
C
Y
217
N
C
Y
218
N
N
Y
219
N
C
Y
220
N
C
Y
221
N
N
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
S
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
N
N
281
S
C
N
282
N
C
N
283
N
O
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
C
N
288
N
N
N
289
N
O
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
N
310
N
C
N
311
N
S
N
312
N
C
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
MG
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
P
N
350
N
O
N
351
N
O
N
352
N
O
N
353
N
O
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
N
359
N
C
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
N
376
N
O
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
R
C
N
390
N
O
N
391
N
C
N
392
N
O
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
N
N
403
S
C
N
404
N
C
N
405
N
O
N
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
Y
410
N
N
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
N
416
N
O
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
N
440
N
O
N
441
N
O
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
N
N
454
S
C
N
455
N
C
N
456
N
O
N
457
N
C
N
458
N
C
N
459
N
C
N
460
N
O
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
Y
31
N
sing
Y
32
N
doub
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
doub
N
39
N
sing
N
40
N
sing
Y
41
N
sing
Y
42
N
doub
N
43
N
sing
Y
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
doub
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
doub
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
doub
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
Y
217
N
sing
Y
218
N
doub
Y
219
N
doub
N
220
N
sing
Y
221
N
sing
N
222
N
sing
Y
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
doub
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
doub
N
330
N
sing
Y
331
N
doub
N
332
N
sing
Y
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
doub
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
Y
398
N
doub
Y
399
N
sing
Y
400
N
sing
N
401
N
sing
Y
402
N
doub
Y
403
N
sing
Y
404
N
sing
N
405
N
sing
Y
406
N
sing
Y
407
N
doub
N
408
N
sing
Y
409
N
doub
N
410
N
sing
Y
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
US
Protein Sci.
PRCIEI
0795
0961-8368
7
2560
2566
9865950
Crystal structure of two quaternary complexes of dethiobiotin synthetase, enzyme-MgADP-AlF3-diaminopelargonic acid and enzyme-MgADP-dethiobiotin-phosphate; implications for catalysis.
1998
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
95
5495
Snapshot of a Phosphorylated Substrate Intermediate by Kinetic Crystallography
1998
UK
Structure
STRUE6
2005
0969-2126
2
407
Crystal Structure of an ATP-Dependent Carboxylase, Dethiobiotin Synthetase, at 1.65 A Resolution
1994
10.2210/pdb1dam/pdb
pdb_00001dam
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1996-07-01
RIGAKU
GRAPHITE
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU
24028.289
PROTEIN (DETHIOBIOTIN SYNTHETASE)
6.3.3.3
1
man
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
427.201
ADENOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
214.262
6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID
1
syn
non-polymer
18.015
water
199
nat
water
DTBS
E.C.6.3.3.3 LIGASE
no
no
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPT
SPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQ
VIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
BIOD
562
Escherichia coli
1
2.16
34.
6.5
pH 6.5
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Non-polymer description
Refinement description
Data collection
Database references
Derived calculations
1
0
1999-01-13
1
1
2008-04-27
1
2
2011-07-13
1
3
2016-04-06
1
4
2017-10-04
1
5
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
RCSB
1998-08-31
REL
REL
MG
MAGNESIUM ION
PO4
PHOSPHATE ION
ADP
ADENOSINE-5'-DIPHOSPHATE
DTB
6-(5-METHYL-2-OXO-IMIDAZOLIDIN-4-YL)-HEXANOIC ACID
HOH
water
IUM
901
2
MG
MG
901
A
IUM
902
2
MG
MG
902
A
PHO
802
3
PO4
PO4
802
A
ADP
801
4
ADP
ADP
801
A
CYC
803
5
DTB
DTB
803
A
HOH
301
6
HOH
HOH
301
A
HOH
302
6
HOH
HOH
302
A
HOH
304
6
HOH
HOH
304
A
HOH
306
6
HOH
HOH
306
A
HOH
307
6
HOH
HOH
307
A
HOH
308
6
HOH
HOH
308
A
HOH
309
6
HOH
HOH
309
A
HOH
310
6
HOH
HOH
310
A
HOH
311
6
HOH
HOH
311
A
HOH
314
6
HOH
HOH
314
A
HOH
315
6
HOH
HOH
315
A
HOH
316
6
HOH
HOH
316
A
HOH
317
6
HOH
HOH
317
A
HOH
321
6
HOH
HOH
321
A
HOH
322
6
HOH
HOH
322
A
HOH
323
6
HOH
HOH
323
A
HOH
325
6
HOH
HOH
325
A
HOH
326
6
HOH
HOH
326
A
HOH
327
6
HOH
HOH
327
A
HOH
329
6
HOH
HOH
329
A
HOH
330
6
HOH
HOH
330
A
HOH
331
6
HOH
HOH
331
A
HOH
332
6
HOH
HOH
332
A
HOH
338
6
HOH
HOH
338
A
HOH
339
6
HOH
HOH
339
A
HOH
343
6
HOH
HOH
343
A
HOH
344
6
HOH
HOH
344
A
HOH
345
6
HOH
HOH
345
A
HOH
348
6
HOH
HOH
348
A
HOH
349
6
HOH
HOH
349
A
HOH
350
6
HOH
HOH
350
A
HOH
353
6
HOH
HOH
353
A
HOH
356
6
HOH
HOH
356
A
HOH
357
6
HOH
HOH
357
A
HOH
358
6
HOH
HOH
358
A
HOH
359
6
HOH
HOH
359
A
HOH
360
6
HOH
HOH
360
A
HOH
361
6
HOH
HOH
361
A
HOH
362
6
HOH
HOH
362
A
HOH
363
6
HOH
HOH
363
A
HOH
366
6
HOH
HOH
366
A
HOH
367
6
HOH
HOH
367
A
HOH
368
6
HOH
HOH
368
A
HOH
369
6
HOH
HOH
369
A
HOH
370
6
HOH
HOH
370
A
HOH
371
6
HOH
HOH
371
A
HOH
372
6
HOH
HOH
372
A
HOH
373
6
HOH
HOH
373
A
HOH
376
6
HOH
HOH
376
A
HOH
379
6
HOH
HOH
379
A
HOH
380
6
HOH
HOH
380
A
HOH
381
6
HOH
HOH
381
A
HOH
383
6
HOH
HOH
383
A
HOH
385
6
HOH
HOH
385
A
HOH
386
6
HOH
HOH
386
A
HOH
388
6
HOH
HOH
388
A
HOH
390
6
HOH
HOH
390
A
HOH
393
6
HOH
HOH
393
A
HOH
396
6
HOH
HOH
396
A
HOH
398
6
HOH
HOH
398
A
HOH
400
6
HOH
HOH
400
A
HOH
402
6
HOH
HOH
402
A
HOH
404
6
HOH
HOH
404
A
HOH
406
6
HOH
HOH
406
A
HOH
407
6
HOH
HOH
407
A
HOH
412
6
HOH
HOH
412
A
HOH
416
6
HOH
HOH
416
A
HOH
421
6
HOH
HOH
421
A
HOH
423
6
HOH
HOH
423
A
HOH
425
6
HOH
HOH
425
A
HOH
426
6
HOH
HOH
426
A
HOH
427
6
HOH
HOH
427
A
HOH
430
6
HOH
HOH
430
A
HOH
432
6
HOH
HOH
432
A
HOH
433
6
HOH
HOH
433
A
HOH
434
6
HOH
HOH
434
A
HOH
436
6
HOH
HOH
436
A
HOH
438
6
HOH
HOH
438
A
HOH
440
6
HOH
HOH
440
A
HOH
441
6
HOH
HOH
441
A
HOH
444
6
HOH
HOH
444
A
HOH
446
6
HOH
HOH
446
A
HOH
447
6
HOH
HOH
447
A
HOH
448
6
HOH
HOH
448
A
HOH
449
6
HOH
HOH
449
A
HOH
457
6
HOH
HOH
457
A
HOH
460
6
HOH
HOH
460
A
HOH
463
6
HOH
HOH
463
A
HOH
466
6
HOH
HOH
466
A
HOH
470
6
HOH
HOH
470
A
HOH
474
6
HOH
HOH
474
A
HOH
477
6
HOH
HOH
477
A
HOH
481
6
HOH
HOH
481
A
HOH
486
6
HOH
HOH
486
A
HOH
492
6
HOH
HOH
492
A
HOH
493
6
HOH
HOH
493
A
HOH
498
6
HOH
HOH
498
A
HOH
499
6
HOH
HOH
499
A
HOH
500
6
HOH
HOH
500
A
HOH
504
6
HOH
HOH
504
A
HOH
505
6
HOH
HOH
505
A
HOH
506
6
HOH
HOH
506
A
HOH
507
6
HOH
HOH
507
A
HOH
512
6
HOH
HOH
512
A
HOH
513
6
HOH
HOH
513
A
HOH
514
6
HOH
HOH
514
A
HOH
516
6
HOH
HOH
516
A
HOH
518
6
HOH
HOH
518
A
HOH
521
6
HOH
HOH
521
A
HOH
522
6
HOH
HOH
522
A
HOH
523
6
HOH
HOH
523
A
HOH
524
6
HOH
HOH
524
A
HOH
526
6
HOH
HOH
526
A
HOH
530
6
HOH
HOH
530
A
HOH
531
6
HOH
HOH
531
A
HOH
532
6
HOH
HOH
532
A
HOH
533
6
HOH
HOH
533
A
HOH
535
6
HOH
HOH
535
A
HOH
536
6
HOH
HOH
536
A
HOH
538
6
HOH
HOH
538
A
HOH
543
6
HOH
HOH
543
A
HOH
544
6
HOH
HOH
544
A
HOH
546
6
HOH
HOH
546
A
HOH
547
6
HOH
HOH
547
A
HOH
548
6
HOH
HOH
548
A
HOH
551
6
HOH
HOH
551
A
HOH
560
6
HOH
HOH
560
A
HOH
561
6
HOH
HOH
561
A
HOH
569
6
HOH
HOH
569
A
HOH
571
6
HOH
HOH
571
A
HOH
574
6
HOH
HOH
574
A
HOH
580
6
HOH
HOH
580
A
HOH
586
6
HOH
HOH
586
A
HOH
587
6
HOH
HOH
587
A
HOH
589
6
HOH
HOH
589
A
HOH
590
6
HOH
HOH
590
A
HOH
595
6
HOH
HOH
595
A
HOH
596
6
HOH
HOH
596
A
HOH
597
6
HOH
HOH
597
A
HOH
598
6
HOH
HOH
598
A
HOH
600
6
HOH
HOH
600
A
HOH
602
6
HOH
HOH
602
A
HOH
607
6
HOH
HOH
607
A
HOH
610
6
HOH
HOH
610
A
HOH
611
6
HOH
HOH
611
A
HOH
612
6
HOH
HOH
612
A
HOH
614
6
HOH
HOH
614
A
HOH
615
6
HOH
HOH
615
A
HOH
616
6
HOH
HOH
616
A
HOH
622
6
HOH
HOH
622
A
HOH
624
6
HOH
HOH
624
A
HOH
626
6
HOH
HOH
626
A
HOH
652
6
HOH
HOH
652
A
HOH
653
6
HOH
HOH
653
A
HOH
655
6
HOH
HOH
655
A
HOH
656
6
HOH
HOH
656
A
HOH
661
6
HOH
HOH
661
A
HOH
663
6
HOH
HOH
663
A
HOH
664
6
HOH
HOH
664
A
HOH
671
6
HOH
HOH
671
A
HOH
675
6
HOH
HOH
675
A
HOH
676
6
HOH
HOH
676
A
HOH
679
6
HOH
HOH
679
A
HOH
684
6
HOH
HOH
684
A
HOH
685
6
HOH
HOH
685
A
HOH
688
6
HOH
HOH
688
A
HOH
689
6
HOH
HOH
689
A
HOH
691
6
HOH
HOH
691
A
HOH
693
6
HOH
HOH
693
A
HOH
694
6
HOH
HOH
694
A
HOH
700
6
HOH
HOH
700
A
HOH
703
6
HOH
HOH
703
A
HOH
704
6
HOH
HOH
704
A
HOH
706
6
HOH
HOH
706
A
HOH
707
6
HOH
HOH
707
A
HOH
708
6
HOH
HOH
708
A
HOH
709
6
HOH
HOH
709
A
HOH
714
6
HOH
HOH
714
A
HOH
717
6
HOH
HOH
717
A
HOH
718
6
HOH
HOH
718
A
HOH
719
6
HOH
HOH
719
A
HOH
749
6
HOH
HOH
749
A
HOH
750
6
HOH
HOH
750
A
HOH
751
6
HOH
HOH
751
A
HOH
752
6
HOH
HOH
752
A
HOH
753
6
HOH
HOH
753
A
HOH
754
6
HOH
HOH
754
A
HOH
755
6
HOH
HOH
755
A
HOH
756
6
HOH
HOH
756
A
HOH
757
6
HOH
HOH
757
A
HOH
758
6
HOH
HOH
758
A
HOH
759
6
HOH
HOH
759
A
HOH
760
6
HOH
HOH
760
A
HOH
762
6
HOH
HOH
762
A
HOH
763
6
HOH
HOH
763
A
HOH
764
6
HOH
HOH
764
A
HOH
765
6
HOH
HOH
765
A
HOH
766
6
HOH
HOH
766
A
HOH
767
6
HOH
HOH
767
A
SER
1
n
1
SER
1
A
LYS
2
n
2
LYS
2
A
ARG
3
n
3
ARG
3
A
TYR
4
n
4
TYR
4
A
PHE
5
n
5
PHE
5
A
VAL
6
n
6
VAL
6
A
THR
7
n
7
THR
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
ASP
10
n
10
ASP
10
A
THR
11
n
11
THR
11
A
GLU
12
n
12
GLU
12
A
VAL
13
n
13
VAL
13
A
GLY
14
n
14
GLY
14
A
LYS
15
n
15
LYS
15
A
THR
16
n
16
THR
16
A
VAL
17
n
17
VAL
17
A
ALA
18
n
18
ALA
18
A
SER
19
n
19
SER
19
A
CYS
20
n
20
CYS
20
A
ALA
21
n
21
ALA
21
A
LEU
22
n
22
LEU
22
A
LEU
23
n
23
LEU
23
A
GLN
24
n
24
GLN
24
A
ALA
25
n
25
ALA
25
A
ALA
26
n
26
ALA
26
A
LYS
27
n
27
LYS
27
A
ALA
28
n
28
ALA
28
A
ALA
29
n
29
ALA
29
A
GLY
30
n
30
GLY
30
A
TYR
31
n
31
TYR
31
A
ARG
32
n
32
ARG
32
A
THR
33
n
33
THR
33
A
ALA
34
n
34
ALA
34
A
GLY
35
n
35
GLY
35
A
TYR
36
n
36
TYR
36
A
LYS
37
n
37
LYS
37
A
PRO
38
n
38
PRO
38
A
VAL
39
n
39
VAL
39
A
ALA
40
n
40
ALA
40
A
SER
41
n
41
SER
41
A
GLY
42
n
42
GLY
42
A
SER
43
n
43
SER
43
A
GLU
44
n
44
GLU
44
A
LYS
45
n
45
LYS
45
A
THR
46
n
46
THR
46
A
PRO
47
n
47
PRO
47
A
GLU
48
n
48
GLU
48
A
GLY
49
n
49
GLY
49
A
LEU
50
n
50
LEU
50
A
ARG
51
n
51
ARG
51
A
ASN
52
n
52
ASN
52
A
SER
53
n
53
SER
53
A
ASP
54
n
54
ASP
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
ALA
57
n
57
ALA
57
A
LEU
58
n
58
LEU
58
A
GLN
59
n
59
GLN
59
A
ARG
60
n
60
ARG
60
A
ASN
61
n
61
ASN
61
A
SER
62
n
62
SER
62
A
SER
63
n
63
SER
63
A
LEU
64
n
64
LEU
64
A
GLN
65
n
65
GLN
65
A
LEU
66
n
66
LEU
66
A
ASP
67
n
67
ASP
67
A
TYR
68
n
68
TYR
68
A
ALA
69
n
69
ALA
69
A
THR
70
n
70
THR
70
A
VAL
71
n
71
VAL
71
A
ASN
72
n
72
ASN
72
A
PRO
73
n
73
PRO
73
A
TYR
74
n
74
TYR
74
A
THR
75
n
75
THR
75
A
PHE
76
n
76
PHE
76
A
ALA
77
n
77
ALA
77
A
GLU
78
n
78
GLU
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
SER
81
n
81
SER
81
A
PRO
82
n
82
PRO
82
A
HIS
83
n
83
HIS
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
SER
86
n
86
SER
86
A
ALA
87
n
87
ALA
87
A
GLN
88
n
88
GLN
88
A
GLU
89
n
89
GLU
89
A
GLY
90
n
90
GLY
90
A
ARG
91
n
91
ARG
91
A
PRO
92
n
92
PRO
92
A
ILE
93
n
93
ILE
93
A
GLU
94
n
94
GLU
94
A
SER
95
n
95
SER
95
A
LEU
96
n
96
LEU
96
A
VAL
97
n
97
VAL
97
A
MET
98
n
98
MET
98
A
SER
99
n
99
SER
99
A
ALA
100
n
100
ALA
100
A
GLY
101
n
101
GLY
101
A
LEU
102
n
102
LEU
102
A
ARG
103
n
103
ARG
103
A
ALA
104
n
104
ALA
104
A
LEU
105
n
105
LEU
105
A
GLU
106
n
106
GLU
106
A
GLN
107
n
107
GLN
107
A
GLN
108
n
108
GLN
108
A
ALA
109
n
109
ALA
109
A
ASP
110
n
110
ASP
110
A
TRP
111
n
111
TRP
111
A
VAL
112
n
112
VAL
112
A
LEU
113
n
113
LEU
113
A
VAL
114
n
114
VAL
114
A
GLU
115
n
115
GLU
115
A
GLY
116
n
116
GLY
116
A
ALA
117
n
117
ALA
117
A
GLY
118
n
118
GLY
118
A
GLY
119
n
119
GLY
119
A
TRP
120
n
120
TRP
120
A
PHE
121
n
121
PHE
121
A
THR
122
n
122
THR
122
A
PRO
123
n
123
PRO
123
A
LEU
124
n
124
LEU
124
A
SER
125
n
125
SER
125
A
ASP
126
n
126
ASP
126
A
THR
127
n
127
THR
127
A
PHE
128
n
128
PHE
128
A
THR
129
n
129
THR
129
A
PHE
130
n
130
PHE
130
A
ALA
131
n
131
ALA
131
A
ASP
132
n
132
ASP
132
A
TRP
133
n
133
TRP
133
A
VAL
134
n
134
VAL
134
A
THR
135
n
135
THR
135
A
GLN
136
n
136
GLN
136
A
GLU
137
n
137
GLU
137
A
GLN
138
n
138
GLN
138
A
LEU
139
n
139
LEU
139
A
PRO
140
n
140
PRO
140
A
VAL
141
n
141
VAL
141
A
ILE
142
n
142
ILE
142
A
LEU
143
n
143
LEU
143
A
VAL
144
n
144
VAL
144
A
VAL
145
n
145
VAL
145
A
GLY
146
n
146
GLY
146
A
VAL
147
n
147
VAL
147
A
LYS
148
n
148
LYS
148
A
LEU
149
n
149
LEU
149
A
GLY
150
n
150
GLY
150
A
CYS
151
n
151
CYS
151
A
ILE
152
n
152
ILE
152
A
ASN
153
n
153
ASN
153
A
HIS
154
n
154
HIS
154
A
ALA
155
n
155
ALA
155
A
MET
156
n
156
MET
156
A
LEU
157
n
157
LEU
157
A
THR
158
n
158
THR
158
A
ALA
159
n
159
ALA
159
A
GLN
160
n
160
GLN
160
A
VAL
161
n
161
VAL
161
A
ILE
162
n
162
ILE
162
A
GLN
163
n
163
GLN
163
A
HIS
164
n
164
HIS
164
A
ALA
165
n
165
ALA
165
A
GLY
166
n
166
GLY
166
A
LEU
167
n
167
LEU
167
A
THR
168
n
168
THR
168
A
LEU
169
n
169
LEU
169
A
ALA
170
n
170
ALA
170
A
GLY
171
n
171
GLY
171
A
TRP
172
n
172
TRP
172
A
VAL
173
n
173
VAL
173
A
ALA
174
n
174
ALA
174
A
ASN
175
n
175
ASN
175
A
ASP
176
n
176
ASP
176
A
VAL
177
n
177
VAL
177
A
THR
178
n
178
THR
178
A
PRO
179
n
179
PRO
179
A
PRO
180
n
180
PRO
180
A
GLY
181
n
181
GLY
181
A
LYS
182
n
182
LYS
182
A
ARG
183
n
183
ARG
183
A
HIS
184
n
184
HIS
184
A
ALA
185
n
185
ALA
185
A
GLU
186
n
186
GLU
186
A
TYR
187
n
187
TYR
187
A
MET
188
n
188
MET
188
A
THR
189
n
189
THR
189
A
THR
190
n
190
THR
190
A
LEU
191
n
191
LEU
191
A
THR
192
n
192
THR
192
A
ARG
193
n
193
ARG
193
A
MET
194
n
194
MET
194
A
ILE
195
n
195
ILE
195
A
PRO
196
n
196
PRO
196
A
ALA
197
n
197
ALA
197
A
PRO
198
n
198
PRO
198
A
LEU
199
n
199
LEU
199
A
LEU
200
n
200
LEU
200
A
GLY
201
n
201
GLY
201
A
GLU
202
n
202
GLU
202
A
ILE
203
n
203
ILE
203
A
PRO
204
n
204
PRO
204
A
TRP
205
n
205
TRP
205
A
LEU
206
n
206
LEU
206
A
ALA
207
n
207
ALA
207
A
GLU
208
n
208
GLU
208
A
ASN
209
n
209
ASN
209
A
PRO
210
n
210
PRO
210
A
GLU
211
n
211
GLU
211
A
ASN
212
n
212
ASN
212
A
ALA
213
n
213
ALA
213
A
ALA
214
n
214
ALA
214
A
THR
215
n
215
THR
215
A
GLY
216
n
216
GLY
216
A
LYS
217
n
217
LYS
217
A
TYR
218
n
218
TYR
218
A
ILE
219
n
219
ILE
219
A
ASN
220
n
220
ASN
220
A
LEU
221
n
221
LEU
221
A
ALA
222
n
222
ALA
222
A
LEU
223
n
223
LEU
223
A
LEU
224
n
224
LEU
224
A
author_and_software_defined_assembly
PISA,PQS
2
dimeric
6610
-96
16850
A
THR
16
A
OG1
THR
16
1_555
A
MG
901
B
MG
MG
1_555
A
ASP
54
A
OD2
ASP
54
1_555
83.4
A
THR
16
A
OG1
THR
16
1_555
A
MG
901
B
MG
MG
1_555
A
GLU
115
A
OE2
GLU
115
1_555
86.6
A
ASP
54
A
OD2
ASP
54
1_555
A
MG
901
B
MG
MG
1_555
A
GLU
115
A
OE2
GLU
115
1_555
99.6
A
THR
16
A
OG1
THR
16
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
444
G
O
HOH
1_555
83.9
A
ASP
54
A
OD2
ASP
54
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
444
G
O
HOH
1_555
68.8
A
GLU
115
A
OE2
GLU
115
1_555
A
MG
901
B
MG
MG
1_555
A
HOH
444
G
O
HOH
1_555
165.7
A
THR
16
A
OG1
THR
16
1_555
A
MG
901
B
MG
MG
1_555
A
ADP
801
E
O2B
ADP
1_555
91.9
A
ASP
54
A
OD2
ASP
54
1_555
A
MG
901
B
MG
MG
1_555
A
ADP
801
E
O2B
ADP
1_555
145.9
A
GLU
115
A
OE2
GLU
115
1_555
A
MG
901
B
MG
MG
1_555
A
ADP
801
E
O2B
ADP
1_555
113.9
A
HOH
444
G
O
HOH
1_555
A
MG
901
B
MG
MG
1_555
A
ADP
801
E
O2B
ADP
1_555
77.1
A
THR
16
A
OG1
THR
16
1_555
A
MG
901
B
MG
MG
1_555
A
PO4
802
D
O2
PO4
1_555
166.9
A
ASP
54
A
OD2
ASP
54
1_555
A
MG
901
B
MG
MG
1_555
A
PO4
802
D
O2
PO4
1_555
84.1
A
GLU
115
A
OE2
GLU
115
1_555
A
MG
901
B
MG
MG
1_555
A
PO4
802
D
O2
PO4
1_555
91.5
A
HOH
444
G
O
HOH
1_555
A
MG
901
B
MG
MG
1_555
A
PO4
802
D
O2
PO4
1_555
95.4
A
ADP
801
E
O2B
ADP
1_555
A
MG
901
B
MG
MG
1_555
A
PO4
802
D
O2
PO4
1_555
100.7
A
HOH
444
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
448
G
O
HOH
1_555
78.0
A
HOH
444
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
749
G
O
HOH
1_555
78.4
A
HOH
448
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
749
G
O
HOH
1_555
79.9
A
HOH
444
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
750
G
O
HOH
1_555
158.5
A
HOH
448
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
750
G
O
HOH
1_555
85.2
A
HOH
749
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
HOH
750
G
O
HOH
1_555
85.6
A
HOH
444
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
ADP
801
E
O3B
ADP
1_555
103.1
A
HOH
448
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
ADP
801
E
O3B
ADP
1_555
98.8
A
HOH
749
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
ADP
801
E
O3B
ADP
1_555
177.8
A
HOH
750
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
ADP
801
E
O3B
ADP
1_555
92.6
A
HOH
444
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
PO4
802
D
O3
PO4
1_555
105.0
A
HOH
448
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
PO4
802
D
O3
PO4
1_555
161.6
A
HOH
749
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
PO4
802
D
O3
PO4
1_555
83.0
A
HOH
750
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
A
PO4
802
D
O3
PO4
1_555
87.0
A
ADP
801
E
O3B
ADP
1_555
A
MG
902
C
MG
MG
1_555
A
PO4
802
D
O3
PO4
1_555
98.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
200
A
O
LEU
200
A
N
TRP
172
A
N
TRP
172
A
O
ALA
170
A
O
ALA
170
A
N
VAL
141
A
N
VAL
141
A
O
ILE
142
A
O
ILE
142
A
N
PHE
5
A
N
PHE
5
A
O
LYS
2
A
O
LYS
2
A
N
VAL
112
A
N
VAL
112
A
O
TRP
111
A
O
TRP
111
A
N
ALA
34
A
N
ALA
34
A
O
ALA
40
A
O
ALA
40
A
N
TYR
74
A
N
TYR
74
A
O
GLU
44
A
O
GLU
44
A
N
ARG
51
A
N
ARG
51
1
3.53
0.50
120.30
123.83
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
3
3
3
N
1
A
ASP
10
179.90
179.83
1
A
ASN
209
33.02
69.33
15.6
0.233
0.18
1.8
20.0
789
18683
4.7
90.6
RANDOM
1
THROUGHOUT
0.0
OTHER
1.8
20.0
199
1940
49
0
1692
0.007
0.020
0.024
0.040
0.023
0.050
1.068
2.000
1.658
3.000
1.310
2.000
2.101
3.000
0.0183
0.085
0.171
0.3
0.250
0.3
0.167
.3
3.3
7.0
18.8
15.0
15.0
1.8
30.0
1DAM
17046
0.044
1
18.1
2.5
90.6
1.8
1.86
3.3
0.337
1
86.1
refinement
REFMAC
data reduction
DENZO
data scaling
SCALEPACK
DETHIOBIOTIN SYNTHETASE COMPLEXED WITH DETHIOBIOTIN, ADP, INORGANIC PHOSPHATE AND MAGNESIUM
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
LYS
15
A
LYS
15
HELX_P
A
ALA
29
A
ALA
29
1
1
15
A
SER
53
A
SER
53
HELX_P
A
ARG
60
A
ARG
60
1
2
8
A
TYR
68
A
TYR
68
HELX_P
A
VAL
71
A
VAL
71
1
3
4
A
PRO
82
A
PRO
82
HELX_P
A
GLU
89
A
GLU
89
1
4
8
A
SER
95
A
SER
95
HELX_P
A
GLN
107
A
GLN
107
1
5
13
A
PHE
130
A
PHE
130
HELX_P
A
GLU
137
A
GLU
137
1
6
8
A
CYS
151
A
CYS
151
HELX_P
A
HIS
164
A
HIS
164
1
7
14
A
HIS
184
A
HIS
184
HELX_P
A
MET
194
A
MET
194
1
8
11
A
PRO
210
A
PRO
210
HELX_P
A
ASN
212
A
ASN
212
5
9
3
A
GLY
216
A
GLY
216
HELX_P
A
TYR
218
A
TYR
218
5
10
3
metalc
2.243
A
THR
16
A
OG1
THR
16
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.139
A
ASP
54
A
OD2
ASP
54
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.003
A
GLU
115
A
OE2
GLU
115
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.832
A
HOH
444
G
O
HOH
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.107
A
HOH
444
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
metalc
2.240
A
HOH
448
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
metalc
2.066
A
HOH
749
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
metalc
2.387
A
HOH
750
G
O
HOH
1_555
A
MG
902
C
MG
MG
1_555
metalc
1.998
A
ADP
801
E
O2B
ADP
1_555
A
MG
901
B
MG
MG
1_555
metalc
1.913
A
ADP
801
E
O3B
ADP
1_555
A
MG
902
C
MG
MG
1_555
metalc
2.004
A
PO4
802
D
O2
PO4
1_555
A
MG
901
B
MG
MG
1_555
metalc
2.244
A
PO4
802
D
O3
PO4
1_555
A
MG
902
C
MG
MG
1_555
LIGASE
LIGASE, BIOTIN BIOSYNTHESIS, MAGNESIUM, ATP-BINDING, PHOSPHORYL TRANSFER
BIOD_ECOLI
UNP
1
P13000
1
224
1DAM
1
224
P13000
A
1
1
224
6
2
2
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
199
A
LEU
199
A
ILE
203
A
ILE
203
A
LEU
169
A
LEU
169
A
ASN
175
A
ASN
175
A
VAL
141
A
VAL
141
A
GLY
146
A
GLY
146
A
LYS
2
A
LYS
2
A
GLY
8
A
GLY
8
A
TRP
111
A
TRP
111
A
GLU
115
A
GLU
115
A
THR
33
A
THR
33
A
TYR
36
A
TYR
36
A
VAL
39
A
VAL
39
A
SER
41
A
SER
41
A
TYR
74
A
TYR
74
A
PHE
76
A
PHE
76
A
SER
43
A
SER
43
A
THR
46
A
THR
46
A
GLY
49
A
GLY
49
A
ASN
52
A
ASN
52
BINDING SITE FOR RESIDUE MG A 901
A
MG
901
Software
7
BINDING SITE FOR RESIDUE MG A 902
A
MG
902
Software
7
BINDING SITE FOR RESIDUE PO4 A 802
A
PO4
802
Software
13
BINDING SITE FOR RESIDUE ADP A 801
A
ADP
801
Software
21
BINDING SITE FOR RESIDUE DTB A 803
A
DTB
803
Software
13
A
THR
16
A
THR
16
7
1_555
A
ASP
54
A
ASP
54
7
1_555
A
GLU
115
A
GLU
115
7
1_555
A
HOH
444
G
HOH
7
1_555
A
ADP
801
E
ADP
7
1_555
A
PO4
802
D
PO4
7
1_555
A
MG
902
C
MG
7
1_555
A
HOH
444
G
HOH
7
1_555
A
HOH
448
G
HOH
7
1_555
A
HOH
749
G
HOH
7
1_555
A
HOH
750
G
HOH
7
1_555
A
ADP
801
E
ADP
7
1_555
A
PO4
802
D
PO4
7
1_555
A
MG
901
B
MG
7
1_555
A
THR
11
A
THR
11
13
1_555
A
LYS
15
A
LYS
15
13
1_555
A
LYS
37
A
LYS
37
13
1_555
A
ASP
54
A
ASP
54
13
1_555
A
GLU
115
A
GLU
115
13
1_555
A
ALA
117
A
ALA
117
13
1_555
A
GLY
118
A
GLY
118
13
1_555
A
HOH
719
G
HOH
13
1_555
A
HOH
749
G
HOH
13
1_555
A
ADP
801
E
ADP
13
1_555
A
DTB
803
F
DTB
13
1_555
A
MG
901
B
MG
13
1_555
A
MG
902
C
MG
13
1_555
A
GLU
12
A
GLU
12
21
1_555
A
VAL
13
A
VAL
13
21
1_555
A
GLY
14
A
GLY
14
21
1_555
A
LYS
15
A
LYS
15
21
1_555
A
THR
16
A
THR
16
21
1_555
A
VAL
17
A
VAL
17
21
1_555
A
GLU
115
A
GLU
115
21
1_555
A
ASN
175
A
ASN
175
21
1_555
A
ASP
176
A
ASP
176
21
1_555
A
PRO
204
A
PRO
204
21
1_555
A
TRP
205
A
TRP
205
21
1_555
A
LEU
206
A
LEU
206
21
1_555
A
PRO
210
A
PRO
210
21
1_555
A
GLU
211
A
GLU
211
21
1_555
A
HOH
444
G
HOH
21
1_555
A
HOH
448
G
HOH
21
1_555
A
HOH
714
G
HOH
21
1_555
A
HOH
759
G
HOH
21
1_555
A
PO4
802
D
PO4
21
1_555
A
MG
901
B
MG
21
1_555
A
MG
902
C
MG
21
1_555
A
THR
11
A
THR
11
13
1_555
A
SER
41
A
SER
41
13
1_555
A
SER
81
A
SER
81
13
1_555
A
LEU
149
A
LEU
149
13
2_555
A
GLY
150
A
GLY
150
13
2_555
A
CYS
151
A
CYS
151
13
2_555
A
ILE
152
A
ILE
152
13
2_555
A
ASN
153
A
ASN
153
13
2_555
A
TYR
187
A
TYR
187
13
2_555
A
HOH
655
G
HOH
13
2_555
A
HOH
717
G
HOH
13
1_555
A
HOH
749
G
HOH
13
1_555
A
PO4
802
D
PO4
13
1_555
5
C 1 2 1