1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lytle, B.L.
Volkman, B.F.
Westler, W.M.
Heckman, M.P.
Wu, J.H.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
307
745
753
10.1006/jmbi.2001.4522
11273698
Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain.
2001
US
ARCH.BIOCHEM.BIOPHYS.
ABBIA4
0158
0003-9861
379
237
10.1006/abbi.2000.1882
Secondary Structure and Calcium-induced Folding of the Clostridium thermocellum Dockerin Domain Determined by NMR Spectroscopy
2000
US
J.Bacteriol.
JOBAAY
0767
0021-9193
180
6581
6585
Involvement of Both Dockerin Subdomains in Assembly of the Clostridium thermocellum Cellulosome
1998
10.2210/pdb1daq/pdb
pdb_00001daq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7858.770
ENDOGLUCANASE SS
3.2.1.4
TYPE I DOCKERIN DOMAIN (RESIDUES 673-741)
1
man
polymer
40.078
CALCIUM ION
2
syn
non-polymer
CELS
CELS
no
no
MSTKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDTLPYKNG
MSTKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDTLPYKNG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Clostridium
Escherichia
sample
1515
Clostridium thermocellum
562
Escherichia coli
JM109(DE3)
PLASMID
PCYB2
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-04-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2021-11-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
NMR, 20 STRUCTURES
HELIX
DETERMINATION METHOD: AUTHOR-DETERMINED
RCSB
Y
RCSB
1999-10-31
REL
REL
CA
CALCIUM ION
THIS STRUCTURE WAS DETERMINED BY STANDARD TECHNIQUES USING UNLABELED AND 15N- LABELED DOCKERIN.
1
3D_15N-SEPARATED_NOESY
2D NOESY
2D NOESY
3D_15N-SEPARATED_TOCSY
100mM KCL
6.0
1
atm
328
K
100mM KCL
6.0
1
atm
328
K
THE STRUCTURE IS BASED ON 728 NOE-DERIVED DISTANCE CONSTRAINTS, 79 DIHEDRAL ANGLE CONSTRAINTS, AND 12 CALCIUM ION RESTRAINTS.
torsion angle dynamics
minimized average structure
100MM POTASSIUM CHLORIDE; 20MM CALCIUM CHLORIDE; 90% H2O, 10% D2O
P.GUENTERT, C.MUMENTHALER, K.WUETHRICH
refinement
DYANA
1.5
P.GUENTERT, C.MUMENTHALER, K.WUETHRICH
structure solution
DYANA
1.5
MOLECULAR SIMULATIONS
processing
Felix
95.0
F. DELAGALIO, S. GRZESIEK, G. VUISTER, G. ZHU, J. PFEIFER, A. BAX
processing
NMRPipe
structure solution
XEASY
1.2
500
Bruker
DMX
600
Bruker
DMX
750
Bruker
DMX
CA
72
2
CA
CA
72
A
CA
73
2
CA
CA
73
A
MET
1
n
1
MET
1
A
SER
2
n
2
SER
2
A
THR
3
n
3
THR
3
A
LYS
4
n
4
LYS
4
A
LEU
5
n
5
LEU
5
A
TYR
6
n
6
TYR
6
A
GLY
7
n
7
GLY
7
A
ASP
8
n
8
ASP
8
A
VAL
9
n
9
VAL
9
A
ASN
10
n
10
ASN
10
A
ASP
11
n
11
ASP
11
A
ASP
12
n
12
ASP
12
A
GLY
13
n
13
GLY
13
A
LYS
14
n
14
LYS
14
A
VAL
15
n
15
VAL
15
A
ASN
16
n
16
ASN
16
A
SER
17
n
17
SER
17
A
THR
18
n
18
THR
18
A
ASP
19
n
19
ASP
19
A
ALA
20
n
20
ALA
20
A
VAL
21
n
21
VAL
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LYS
24
n
24
LYS
24
A
ARG
25
n
25
ARG
25
A
TYR
26
n
26
TYR
26
A
VAL
27
n
27
VAL
27
A
LEU
28
n
28
LEU
28
A
ARG
29
n
29
ARG
29
A
SER
30
n
30
SER
30
A
GLY
31
n
31
GLY
31
A
ILE
32
n
32
ILE
32
A
SER
33
n
33
SER
33
A
ILE
34
n
34
ILE
34
A
ASN
35
n
35
ASN
35
A
THR
36
n
36
THR
36
A
ASP
37
n
37
ASP
37
A
ASN
38
n
38
ASN
38
A
ALA
39
n
39
ALA
39
A
ASP
40
n
40
ASP
40
A
LEU
41
n
41
LEU
41
A
ASN
42
n
42
ASN
42
A
GLU
43
n
43
GLU
43
A
ASP
44
n
44
ASP
44
A
GLY
45
n
45
GLY
45
A
ARG
46
n
46
ARG
46
A
VAL
47
n
47
VAL
47
A
ASN
48
n
48
ASN
48
A
SER
49
n
49
SER
49
A
THR
50
n
50
THR
50
A
ASP
51
n
51
ASP
51
A
LEU
52
n
52
LEU
52
A
GLY
53
n
53
GLY
53
A
ILE
54
n
54
ILE
54
A
LEU
55
n
55
LEU
55
A
LYS
56
n
56
LYS
56
A
ARG
57
n
57
ARG
57
A
TYR
58
n
58
TYR
58
A
ILE
59
n
59
ILE
59
A
LEU
60
n
60
LEU
60
A
LYS
61
n
61
LYS
61
A
GLU
62
n
62
GLU
62
A
ILE
63
n
63
ILE
63
A
ASP
64
n
64
ASP
64
A
THR
65
n
65
THR
65
A
LEU
66
n
66
LEU
66
A
PRO
67
n
67
PRO
67
A
TYR
68
n
68
TYR
68
A
LYS
69
n
69
LYS
69
A
ASN
70
n
70
ASN
70
A
GLY
71
n
71
GLY
71
A
author_defined_assembly
1
monomeric
A
ASP
8
A
OD1
ASP
8
1_555
A
CA
72
B
CA
CA
1_555
A
ASN
10
A
OD1
ASN
10
1_555
75.7
A
ASP
8
A
OD1
ASP
8
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
12
A
OD2
ASP
12
1_555
108.7
A
ASN
10
A
OD1
ASN
10
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
12
A
OD2
ASP
12
1_555
106.2
A
ASP
8
A
OD1
ASP
8
1_555
A
CA
72
B
CA
CA
1_555
A
LYS
14
A
O
LYS
14
1_555
70.9
A
ASN
10
A
OD1
ASN
10
1_555
A
CA
72
B
CA
CA
1_555
A
LYS
14
A
O
LYS
14
1_555
126.1
A
ASP
12
A
OD2
ASP
12
1_555
A
CA
72
B
CA
CA
1_555
A
LYS
14
A
O
LYS
14
1_555
123.9
A
ASP
8
A
OD1
ASP
8
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD1
ASP
19
1_555
121.5
A
ASN
10
A
OD1
ASN
10
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD1
ASP
19
1_555
71.0
A
ASP
12
A
OD2
ASP
12
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD1
ASP
19
1_555
126.0
A
LYS
14
A
O
LYS
14
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD1
ASP
19
1_555
92.1
A
ASP
8
A
OD1
ASP
8
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
84.2
A
ASN
10
A
OD1
ASN
10
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
85.0
A
ASP
12
A
OD2
ASP
12
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
164.5
A
LYS
14
A
O
LYS
14
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
51.0
A
ASP
19
A
OD1
ASP
19
1_555
A
CA
72
B
CA
CA
1_555
A
ASP
19
A
OD2
ASP
19
1_555
46.9
A
ASP
40
A
OD1
ASP
40
1_555
A
CA
73
C
CA
CA
1_555
A
LEU
41
A
N
LEU
41
1_555
52.3
A
ASP
40
A
OD1
ASP
40
1_555
A
CA
73
C
CA
CA
1_555
A
ASN
42
A
OD1
ASN
42
1_555
87.2
A
LEU
41
A
N
LEU
41
1_555
A
CA
73
C
CA
CA
1_555
A
ASN
42
A
OD1
ASN
42
1_555
66.4
A
ASP
40
A
OD1
ASP
40
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
44
A
OD2
ASP
44
1_555
83.9
A
LEU
41
A
N
LEU
41
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
44
A
OD2
ASP
44
1_555
121.6
A
ASN
42
A
OD1
ASN
42
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
44
A
OD2
ASP
44
1_555
76.2
A
ASP
40
A
OD1
ASP
40
1_555
A
CA
73
C
CA
CA
1_555
A
ARG
46
A
O
ARG
46
1_555
122.4
A
LEU
41
A
N
LEU
41
1_555
A
CA
73
C
CA
CA
1_555
A
ARG
46
A
O
ARG
46
1_555
121.3
A
ASN
42
A
OD1
ASN
42
1_555
A
CA
73
C
CA
CA
1_555
A
ARG
46
A
O
ARG
46
1_555
148.5
A
ASP
44
A
OD2
ASP
44
1_555
A
CA
73
C
CA
CA
1_555
A
ARG
46
A
O
ARG
46
1_555
114.2
A
ASP
40
A
OD1
ASP
40
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD1
ASP
51
1_555
131.5
A
LEU
41
A
N
LEU
41
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD1
ASP
51
1_555
115.6
A
ASN
42
A
OD1
ASN
42
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD1
ASP
51
1_555
52.3
A
ASP
44
A
OD2
ASP
44
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD1
ASP
51
1_555
63.4
A
ARG
46
A
O
ARG
46
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD1
ASP
51
1_555
104.0
A
ASP
40
A
OD1
ASP
40
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD2
ASP
51
1_555
134.7
A
LEU
41
A
N
LEU
41
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD2
ASP
51
1_555
84.5
A
ASN
42
A
OD1
ASN
42
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD2
ASP
51
1_555
60.3
A
ASP
44
A
OD2
ASP
44
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD2
ASP
51
1_555
114.1
A
ARG
46
A
O
ARG
46
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD2
ASP
51
1_555
89.1
A
ASP
51
A
OD1
ASP
51
1_555
A
CA
73
C
CA
CA
1_555
A
ASP
51
A
OD2
ASP
51
1_555
51.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O
H
LEU
VAL
23
27
1.51
1
A
A
O
H
LEU
ILE
55
59
1.52
1
A
A
O
HD21
ASP
ASN
8
35
1.59
1
A
A
OD1
H
ASN
THR
16
18
1.60
1
A
LEU
5
-170.00
148.17
1
A
ARG
29
-179.59
-179.44
1
A
LEU
41
-148.17
19.36
1
A
ASN
42
-153.51
20.96
1
A
ARG
46
-145.88
-93.47
1
A
SER
49
166.61
-30.74
1
A
LYS
61
-177.07
-36.57
1
A
ILE
63
-33.20
99.21
1
A
ASP
64
174.65
-34.63
1
A
THR
65
-130.70
-41.97
1
A
LEU
66
67.91
94.88
1
A
TYR
68
-38.17
117.99
minimized average
SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME (MINIMIZED AVERAGE STRUCTURE)
1
N
N
2
N
N
2
N
N
A
ASP
19
A
ASP
19
HELX_P
A
ARG
29
A
ARG
29
1
1
11
A
THR
36
A
THR
36
HELX_P
A
ALA
39
A
ALA
39
5
2
4
A
ASP
51
A
ASP
51
HELX_P
A
ILE
59
A
ILE
59
1
3
9
metalc
3.000
A
ASP
8
A
OD1
ASP
8
1_555
A
CA
72
B
CA
CA
1_555
metalc
2.804
A
ASN
10
A
OD1
ASN
10
1_555
A
CA
72
B
CA
CA
1_555
metalc
2.819
A
ASP
12
A
OD2
ASP
12
1_555
A
CA
72
B
CA
CA
1_555
metalc
2.726
A
LYS
14
A
O
LYS
14
1_555
A
CA
72
B
CA
CA
1_555
metalc
2.775
A
ASP
19
A
OD1
ASP
19
1_555
A
CA
72
B
CA
CA
1_555
metalc
2.817
A
ASP
19
A
OD2
ASP
19
1_555
A
CA
72
B
CA
CA
1_555
metalc
3.063
A
ASP
40
A
OD1
ASP
40
1_555
A
CA
73
C
CA
CA
1_555
metalc
3.188
A
LEU
41
A
N
LEU
41
1_555
A
CA
73
C
CA
CA
1_555
metalc
2.559
A
ASN
42
A
OD1
ASN
42
1_555
A
CA
73
C
CA
CA
1_555
metalc
2.769
A
ASP
44
A
OD2
ASP
44
1_555
A
CA
73
C
CA
CA
1_555
metalc
2.853
A
ARG
46
A
O
ARG
46
1_555
A
CA
73
C
CA
CA
1_555
metalc
2.827
A
ASP
51
A
OD1
ASP
51
1_555
A
CA
73
C
CA
CA
1_555
metalc
2.123
A
ASP
51
A
OD2
ASP
51
1_555
A
CA
73
C
CA
CA
1_555
HYDROLASE
CELLULOSE DEGRADATION, CELLULOSOME, CALCIUM-BINDING, HYDROLASE
GUNS_CLOTM
UNP
1
P38686
672
741
1DAQ
1
70
P38686
A
1
1
70
1
PRO
engineered mutation
MET
1
1DAQ
A
P38686
UNP
672
1
1
engineered mutation
GLY
71
1DAQ
A
P38686
UNP
71
FIRST PREDICTED CA2+ BINDING LOOP
Author
12
SECOND PREDICTED CA2+ BINDING LOOP
Author
12
BINDING SITE FOR RESIDUE CA A 72
A
CA
72
Software
6
BINDING SITE FOR RESIDUE CA A 73
A
CA
73
Software
6
A
ASP
8
A
ASP
8
12
1_555
A
VAL
9
A
VAL
9
12
1_555
A
ASN
10
A
ASN
10
12
1_555
A
ASP
11
A
ASP
11
12
1_555
A
ASP
12
A
ASP
12
12
1_555
A
GLY
13
A
GLY
13
12
1_555
A
LYS
14
A
LYS
14
12
1_555
A
VAL
15
A
VAL
15
12
1_555
A
ASN
16
A
ASN
16
12
1_555
A
SER
17
A
SER
17
12
1_555
A
THR
18
A
THR
18
12
1_555
A
ASP
19
A
ASP
19
12
1_555
A
ASP
40
A
ASP
40
12
1_555
A
LEU
41
A
LEU
41
12
1_555
A
ASN
42
A
ASN
42
12
1_555
A
GLU
43
A
GLU
43
12
1_555
A
ASP
44
A
ASP
44
12
1_555
A
GLY
45
A
GLY
45
12
1_555
A
ARG
46
A
ARG
46
12
1_555
A
VAL
47
A
VAL
47
12
1_555
A
ASN
48
A
ASN
48
12
1_555
A
SER
49
A
SER
49
12
1_555
A
THR
50
A
THR
50
12
1_555
A
ASP
51
A
ASP
51
12
1_555
A
ASP
8
A
ASP
8
6
1_555
A
ASN
10
A
ASN
10
6
1_555
A
ASP
12
A
ASP
12
6
1_555
A
GLY
13
A
GLY
13
6
1_555
A
LYS
14
A
LYS
14
6
1_555
A
ASP
19
A
ASP
19
6
1_555
A
ASP
40
A
ASP
40
6
1_555
A
LEU
41
A
LEU
41
6
1_555
A
ASN
42
A
ASN
42
6
1_555
A
ASP
44
A
ASP
44
6
1_555
A
ARG
46
A
ARG
46
6
1_555
A
ASP
51
A
ASP
51
6
1_555
1
P 1