1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Lytle, B.L. Volkman, B.F. Westler, W.M. Heckman, M.P. Wu, J.H.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Ca 2 40.078 CALCIUM ION non-polymer C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 307 745 753 10.1006/jmbi.2001.4522 11273698 Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain. 2001 US ARCH.BIOCHEM.BIOPHYS. ABBIA4 0158 0003-9861 379 237 10.1006/abbi.2000.1882 Secondary Structure and Calcium-induced Folding of the Clostridium thermocellum Dockerin Domain Determined by NMR Spectroscopy 2000 US J.Bacteriol. JOBAAY 0767 0021-9193 180 6581 6585 Involvement of Both Dockerin Subdomains in Assembly of the Clostridium thermocellum Cellulosome 1998 10.2210/pdb1daq/pdb pdb_00001daq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 7858.770 ENDOGLUCANASE SS 3.2.1.4 TYPE I DOCKERIN DOMAIN (RESIDUES 673-741) 1 man polymer 40.078 CALCIUM ION 2 syn non-polymer CELS CELS no no MSTKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDTLPYKNG MSTKLYGDVNDDGKVNSTDAVALKRYVLRSGISINTDNADLNEDGRVNSTDLGILKRYILKEIDTLPYKNG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Clostridium Escherichia sample 1515 Clostridium thermocellum 562 Escherichia coli JM109(DE3) PLASMID PCYB2 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-04-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2021-11-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id NMR, 20 STRUCTURES HELIX DETERMINATION METHOD: AUTHOR-DETERMINED RCSB Y RCSB 1999-10-31 REL REL CA CALCIUM ION THIS STRUCTURE WAS DETERMINED BY STANDARD TECHNIQUES USING UNLABELED AND 15N- LABELED DOCKERIN. 1 3D_15N-SEPARATED_NOESY 2D NOESY 2D NOESY 3D_15N-SEPARATED_TOCSY 100mM KCL 6.0 1 atm 328 K 100mM KCL 6.0 1 atm 328 K THE STRUCTURE IS BASED ON 728 NOE-DERIVED DISTANCE CONSTRAINTS, 79 DIHEDRAL ANGLE CONSTRAINTS, AND 12 CALCIUM ION RESTRAINTS. torsion angle dynamics minimized average structure 100MM POTASSIUM CHLORIDE; 20MM CALCIUM CHLORIDE; 90% H2O, 10% D2O P.GUENTERT, C.MUMENTHALER, K.WUETHRICH refinement DYANA 1.5 P.GUENTERT, C.MUMENTHALER, K.WUETHRICH structure solution DYANA 1.5 MOLECULAR SIMULATIONS processing Felix 95.0 F. DELAGALIO, S. GRZESIEK, G. VUISTER, G. ZHU, J. PFEIFER, A. BAX processing NMRPipe structure solution XEASY 1.2 500 Bruker DMX 600 Bruker DMX 750 Bruker DMX CA 72 2 CA CA 72 A CA 73 2 CA CA 73 A MET 1 n 1 MET 1 A SER 2 n 2 SER 2 A THR 3 n 3 THR 3 A LYS 4 n 4 LYS 4 A LEU 5 n 5 LEU 5 A TYR 6 n 6 TYR 6 A GLY 7 n 7 GLY 7 A ASP 8 n 8 ASP 8 A VAL 9 n 9 VAL 9 A ASN 10 n 10 ASN 10 A ASP 11 n 11 ASP 11 A ASP 12 n 12 ASP 12 A GLY 13 n 13 GLY 13 A LYS 14 n 14 LYS 14 A VAL 15 n 15 VAL 15 A ASN 16 n 16 ASN 16 A SER 17 n 17 SER 17 A THR 18 n 18 THR 18 A ASP 19 n 19 ASP 19 A ALA 20 n 20 ALA 20 A VAL 21 n 21 VAL 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LYS 24 n 24 LYS 24 A ARG 25 n 25 ARG 25 A TYR 26 n 26 TYR 26 A VAL 27 n 27 VAL 27 A LEU 28 n 28 LEU 28 A ARG 29 n 29 ARG 29 A SER 30 n 30 SER 30 A GLY 31 n 31 GLY 31 A ILE 32 n 32 ILE 32 A SER 33 n 33 SER 33 A ILE 34 n 34 ILE 34 A ASN 35 n 35 ASN 35 A THR 36 n 36 THR 36 A ASP 37 n 37 ASP 37 A ASN 38 n 38 ASN 38 A ALA 39 n 39 ALA 39 A ASP 40 n 40 ASP 40 A LEU 41 n 41 LEU 41 A ASN 42 n 42 ASN 42 A GLU 43 n 43 GLU 43 A ASP 44 n 44 ASP 44 A GLY 45 n 45 GLY 45 A ARG 46 n 46 ARG 46 A VAL 47 n 47 VAL 47 A ASN 48 n 48 ASN 48 A SER 49 n 49 SER 49 A THR 50 n 50 THR 50 A ASP 51 n 51 ASP 51 A LEU 52 n 52 LEU 52 A GLY 53 n 53 GLY 53 A ILE 54 n 54 ILE 54 A LEU 55 n 55 LEU 55 A LYS 56 n 56 LYS 56 A ARG 57 n 57 ARG 57 A TYR 58 n 58 TYR 58 A ILE 59 n 59 ILE 59 A LEU 60 n 60 LEU 60 A LYS 61 n 61 LYS 61 A GLU 62 n 62 GLU 62 A ILE 63 n 63 ILE 63 A ASP 64 n 64 ASP 64 A THR 65 n 65 THR 65 A LEU 66 n 66 LEU 66 A PRO 67 n 67 PRO 67 A TYR 68 n 68 TYR 68 A LYS 69 n 69 LYS 69 A ASN 70 n 70 ASN 70 A GLY 71 n 71 GLY 71 A author_defined_assembly 1 monomeric A ASP 8 A OD1 ASP 8 1_555 A CA 72 B CA CA 1_555 A ASN 10 A OD1 ASN 10 1_555 75.7 A ASP 8 A OD1 ASP 8 1_555 A CA 72 B CA CA 1_555 A ASP 12 A OD2 ASP 12 1_555 108.7 A ASN 10 A OD1 ASN 10 1_555 A CA 72 B CA CA 1_555 A ASP 12 A OD2 ASP 12 1_555 106.2 A ASP 8 A OD1 ASP 8 1_555 A CA 72 B CA CA 1_555 A LYS 14 A O LYS 14 1_555 70.9 A ASN 10 A OD1 ASN 10 1_555 A CA 72 B CA CA 1_555 A LYS 14 A O LYS 14 1_555 126.1 A ASP 12 A OD2 ASP 12 1_555 A CA 72 B CA CA 1_555 A LYS 14 A O LYS 14 1_555 123.9 A ASP 8 A OD1 ASP 8 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD1 ASP 19 1_555 121.5 A ASN 10 A OD1 ASN 10 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD1 ASP 19 1_555 71.0 A ASP 12 A OD2 ASP 12 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD1 ASP 19 1_555 126.0 A LYS 14 A O LYS 14 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD1 ASP 19 1_555 92.1 A ASP 8 A OD1 ASP 8 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD2 ASP 19 1_555 84.2 A ASN 10 A OD1 ASN 10 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD2 ASP 19 1_555 85.0 A ASP 12 A OD2 ASP 12 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD2 ASP 19 1_555 164.5 A LYS 14 A O LYS 14 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD2 ASP 19 1_555 51.0 A ASP 19 A OD1 ASP 19 1_555 A CA 72 B CA CA 1_555 A ASP 19 A OD2 ASP 19 1_555 46.9 A ASP 40 A OD1 ASP 40 1_555 A CA 73 C CA CA 1_555 A LEU 41 A N LEU 41 1_555 52.3 A ASP 40 A OD1 ASP 40 1_555 A CA 73 C CA CA 1_555 A ASN 42 A OD1 ASN 42 1_555 87.2 A LEU 41 A N LEU 41 1_555 A CA 73 C CA CA 1_555 A ASN 42 A OD1 ASN 42 1_555 66.4 A ASP 40 A OD1 ASP 40 1_555 A CA 73 C CA CA 1_555 A ASP 44 A OD2 ASP 44 1_555 83.9 A LEU 41 A N LEU 41 1_555 A CA 73 C CA CA 1_555 A ASP 44 A OD2 ASP 44 1_555 121.6 A ASN 42 A OD1 ASN 42 1_555 A CA 73 C CA CA 1_555 A ASP 44 A OD2 ASP 44 1_555 76.2 A ASP 40 A OD1 ASP 40 1_555 A CA 73 C CA CA 1_555 A ARG 46 A O ARG 46 1_555 122.4 A LEU 41 A N LEU 41 1_555 A CA 73 C CA CA 1_555 A ARG 46 A O ARG 46 1_555 121.3 A ASN 42 A OD1 ASN 42 1_555 A CA 73 C CA CA 1_555 A ARG 46 A O ARG 46 1_555 148.5 A ASP 44 A OD2 ASP 44 1_555 A CA 73 C CA CA 1_555 A ARG 46 A O ARG 46 1_555 114.2 A ASP 40 A OD1 ASP 40 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD1 ASP 51 1_555 131.5 A LEU 41 A N LEU 41 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD1 ASP 51 1_555 115.6 A ASN 42 A OD1 ASN 42 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD1 ASP 51 1_555 52.3 A ASP 44 A OD2 ASP 44 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD1 ASP 51 1_555 63.4 A ARG 46 A O ARG 46 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD1 ASP 51 1_555 104.0 A ASP 40 A OD1 ASP 40 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD2 ASP 51 1_555 134.7 A LEU 41 A N LEU 41 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD2 ASP 51 1_555 84.5 A ASN 42 A OD1 ASN 42 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD2 ASP 51 1_555 60.3 A ASP 44 A OD2 ASP 44 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD2 ASP 51 1_555 114.1 A ARG 46 A O ARG 46 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD2 ASP 51 1_555 89.1 A ASP 51 A OD1 ASP 51 1_555 A CA 73 C CA CA 1_555 A ASP 51 A OD2 ASP 51 1_555 51.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 1 A A O H LEU VAL 23 27 1.51 1 A A O H LEU ILE 55 59 1.52 1 A A O HD21 ASP ASN 8 35 1.59 1 A A OD1 H ASN THR 16 18 1.60 1 A LEU 5 -170.00 148.17 1 A ARG 29 -179.59 -179.44 1 A LEU 41 -148.17 19.36 1 A ASN 42 -153.51 20.96 1 A ARG 46 -145.88 -93.47 1 A SER 49 166.61 -30.74 1 A LYS 61 -177.07 -36.57 1 A ILE 63 -33.20 99.21 1 A ASP 64 174.65 -34.63 1 A THR 65 -130.70 -41.97 1 A LEU 66 67.91 94.88 1 A TYR 68 -38.17 117.99 minimized average SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME (MINIMIZED AVERAGE STRUCTURE) 1 N N 2 N N 2 N N A ASP 19 A ASP 19 HELX_P A ARG 29 A ARG 29 1 1 11 A THR 36 A THR 36 HELX_P A ALA 39 A ALA 39 5 2 4 A ASP 51 A ASP 51 HELX_P A ILE 59 A ILE 59 1 3 9 metalc 3.000 A ASP 8 A OD1 ASP 8 1_555 A CA 72 B CA CA 1_555 metalc 2.804 A ASN 10 A OD1 ASN 10 1_555 A CA 72 B CA CA 1_555 metalc 2.819 A ASP 12 A OD2 ASP 12 1_555 A CA 72 B CA CA 1_555 metalc 2.726 A LYS 14 A O LYS 14 1_555 A CA 72 B CA CA 1_555 metalc 2.775 A ASP 19 A OD1 ASP 19 1_555 A CA 72 B CA CA 1_555 metalc 2.817 A ASP 19 A OD2 ASP 19 1_555 A CA 72 B CA CA 1_555 metalc 3.063 A ASP 40 A OD1 ASP 40 1_555 A CA 73 C CA CA 1_555 metalc 3.188 A LEU 41 A N LEU 41 1_555 A CA 73 C CA CA 1_555 metalc 2.559 A ASN 42 A OD1 ASN 42 1_555 A CA 73 C CA CA 1_555 metalc 2.769 A ASP 44 A OD2 ASP 44 1_555 A CA 73 C CA CA 1_555 metalc 2.853 A ARG 46 A O ARG 46 1_555 A CA 73 C CA CA 1_555 metalc 2.827 A ASP 51 A OD1 ASP 51 1_555 A CA 73 C CA CA 1_555 metalc 2.123 A ASP 51 A OD2 ASP 51 1_555 A CA 73 C CA CA 1_555 HYDROLASE CELLULOSE DEGRADATION, CELLULOSOME, CALCIUM-BINDING, HYDROLASE GUNS_CLOTM UNP 1 P38686 672 741 1DAQ 1 70 P38686 A 1 1 70 1 PRO engineered mutation MET 1 1DAQ A P38686 UNP 672 1 1 engineered mutation GLY 71 1DAQ A P38686 UNP 71 FIRST PREDICTED CA2+ BINDING LOOP Author 12 SECOND PREDICTED CA2+ BINDING LOOP Author 12 BINDING SITE FOR RESIDUE CA A 72 A CA 72 Software 6 BINDING SITE FOR RESIDUE CA A 73 A CA 73 Software 6 A ASP 8 A ASP 8 12 1_555 A VAL 9 A VAL 9 12 1_555 A ASN 10 A ASN 10 12 1_555 A ASP 11 A ASP 11 12 1_555 A ASP 12 A ASP 12 12 1_555 A GLY 13 A GLY 13 12 1_555 A LYS 14 A LYS 14 12 1_555 A VAL 15 A VAL 15 12 1_555 A ASN 16 A ASN 16 12 1_555 A SER 17 A SER 17 12 1_555 A THR 18 A THR 18 12 1_555 A ASP 19 A ASP 19 12 1_555 A ASP 40 A ASP 40 12 1_555 A LEU 41 A LEU 41 12 1_555 A ASN 42 A ASN 42 12 1_555 A GLU 43 A GLU 43 12 1_555 A ASP 44 A ASP 44 12 1_555 A GLY 45 A GLY 45 12 1_555 A ARG 46 A ARG 46 12 1_555 A VAL 47 A VAL 47 12 1_555 A ASN 48 A ASN 48 12 1_555 A SER 49 A SER 49 12 1_555 A THR 50 A THR 50 12 1_555 A ASP 51 A ASP 51 12 1_555 A ASP 8 A ASP 8 6 1_555 A ASN 10 A ASN 10 6 1_555 A ASP 12 A ASP 12 6 1_555 A GLY 13 A GLY 13 6 1_555 A LYS 14 A LYS 14 6 1_555 A ASP 19 A ASP 19 6 1_555 A ASP 40 A ASP 40 6 1_555 A LEU 41 A LEU 41 6 1_555 A ASN 42 A ASN 42 6 1_555 A ASP 44 A ASP 44 6 1_555 A ARG 46 A ARG 46 6 1_555 A ASP 51 A ASP 51 6 1_555 1 P 1