1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Davy, S.L. Osborne, M.J. Moore, G.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking Fe4 S4 351.640 IRON/SULFUR CLUSTER non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J.Mol.Biol. JMOBAK 0070 0022-2836 277 683 706 10.1006/jmbi.1998.1631 9533888 Determination of the structure of oxidised Desulfovibrio africanus ferredoxin I by 1H NMR spectroscopy and comparison of its solution structure with its crystal structure. 1998 10.2210/pdb1dax/pdb pdb_00001dax 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 OXIDIZED 7206.928 FERREDOXIN I 1 nat polymer 351.640 IRON/SULFUR CLUSTER 1 syn non-polymer no no ARKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWEDE ARKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWEDE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Desulfovibrio sample 873 Desulfovibrio africanus BENGHAZI database_2 pdbx_database_status pdbx_nmr_exptl_sample_conditions pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Database references Derived calculations Experimental preparation Other 1 0 1999-01-13 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _pdbx_nmr_exptl_sample_conditions.pressure_units _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1997-12-01 REL REL SF4 IRON/SULFUR CLUSTER THE STRUCTURES WERE OBTAINED USING 1H-1H 2D NMR EXPERIMENTS (DQF-COSY, TOCSY, NOESY). ADDITIONALLY 1D NOE EXPERIMENTS PROVIDED INFORMATION ON THE REGIONS OF THE PROTEIN CLOSE TO THE PARAMAGNETIC 4FE-4S CLUSTER. 75 1 DQF-COSY TOCSY NOESY 1D NOE 7.2 1 atm 298 K DISTANCE GEOMETRY, DG-SIMULATED ANNEALING 90%H2O/10%D2O, 99.9%D2O GUNTERT,WUTHRICH refinement DIANA 2.5 structure solution DIANA 2.5 structure solution X-PLOR 3.843 400 JEOL JEOL GX-400 500 Bruker JEOL A-500 600 Varian BRUKER AMX500 AND AMX600 600 Varian VARIAN UNITY INOVA 600 FS4 65 2 SF4 SF4 65 A ALA 1 n 1 ALA 1 A ARG 2 n 2 ARG 2 A LYS 3 n 3 LYS 3 A PHE 4 n 4 PHE 4 A TYR 5 n 5 TYR 5 A VAL 6 n 6 VAL 6 A ASP 7 n 7 ASP 7 A GLN 8 n 8 GLN 8 A ASP 9 n 9 ASP 9 A GLU 10 n 10 GLU 10 A CYS 11 n 11 CYS 11 A ILE 12 n 12 ILE 12 A ALA 13 n 13 ALA 13 A CYS 14 n 14 CYS 14 A GLU 15 n 15 GLU 15 A SER 16 n 16 SER 16 A CYS 17 n 17 CYS 17 A VAL 18 n 18 VAL 18 A GLU 19 n 19 GLU 19 A ILE 20 n 20 ILE 20 A ALA 21 n 21 ALA 21 A PRO 22 n 22 PRO 22 A GLY 23 n 23 GLY 23 A ALA 24 n 24 ALA 24 A PHE 25 n 25 PHE 25 A ALA 26 n 26 ALA 26 A MET 27 n 27 MET 27 A ASP 28 n 28 ASP 28 A PRO 29 n 29 PRO 29 A GLU 30 n 30 GLU 30 A ILE 31 n 31 ILE 31 A GLU 32 n 32 GLU 32 A LYS 33 n 33 LYS 33 A ALA 34 n 34 ALA 34 A TYR 35 n 35 TYR 35 A VAL 36 n 36 VAL 36 A LYS 37 n 37 LYS 37 A ASP 38 n 38 ASP 38 A VAL 39 n 39 VAL 39 A GLU 40 n 40 GLU 40 A GLY 41 n 41 GLY 41 A ALA 42 n 42 ALA 42 A SER 43 n 43 SER 43 A GLN 44 n 44 GLN 44 A GLU 45 n 45 GLU 45 A GLU 46 n 46 GLU 46 A VAL 47 n 47 VAL 47 A GLU 48 n 48 GLU 48 A GLU 49 n 49 GLU 49 A ALA 50 n 50 ALA 50 A MET 51 n 51 MET 51 A ASP 52 n 52 ASP 52 A THR 53 n 53 THR 53 A CYS 54 n 54 CYS 54 A PRO 55 n 55 PRO 55 A VAL 56 n 56 VAL 56 A GLN 57 n 57 GLN 57 A CYS 58 n 58 CYS 58 A ILE 59 n 59 ILE 59 A HIS 60 n 60 HIS 60 A TRP 61 n 61 TRP 61 A GLU 62 n 62 GLU 62 A ASP 63 n 63 ASP 63 A GLU 64 n 64 GLU 64 A author_defined_assembly 1 monomeric A CYS 11 A SG CYS 11 1_555 A SF4 65 B FE1 SF4 1_555 A SF4 65 B S2 SF4 1_555 113.8 A CYS 11 A SG CYS 11 1_555 A SF4 65 B FE1 SF4 1_555 A SF4 65 B S3 SF4 1_555 116.6 A SF4 65 B S2 SF4 1_555 A SF4 65 B FE1 SF4 1_555 A SF4 65 B S3 SF4 1_555 108.0 A CYS 11 A SG CYS 11 1_555 A SF4 65 B FE1 SF4 1_555 A SF4 65 B S4 SF4 1_555 104.6 A SF4 65 B S2 SF4 1_555 A SF4 65 B FE1 SF4 1_555 A SF4 65 B S4 SF4 1_555 105.0 A SF4 65 B S3 SF4 1_555 A SF4 65 B FE1 SF4 1_555 A SF4 65 B S4 SF4 1_555 108.0 A CYS 14 A SG CYS 14 1_555 A SF4 65 B FE2 SF4 1_555 A SF4 65 B S1 SF4 1_555 100.4 A CYS 14 A SG CYS 14 1_555 A SF4 65 B FE2 SF4 1_555 A SF4 65 B S3 SF4 1_555 113.9 A SF4 65 B S1 SF4 1_555 A SF4 65 B FE2 SF4 1_555 A SF4 65 B S3 SF4 1_555 100.3 A CYS 14 A SG CYS 14 1_555 A SF4 65 B FE2 SF4 1_555 A SF4 65 B S4 SF4 1_555 136.2 A SF4 65 B S1 SF4 1_555 A SF4 65 B FE2 SF4 1_555 A SF4 65 B S4 SF4 1_555 98.0 A SF4 65 B S3 SF4 1_555 A SF4 65 B FE2 SF4 1_555 A SF4 65 B S4 SF4 1_555 101.3 A CYS 14 A SG CYS 14 1_555 A SF4 65 B FE2 SF4 1_555 A CYS 14 A O CYS 14 1_555 82.7 A SF4 65 B S1 SF4 1_555 A SF4 65 B FE2 SF4 1_555 A CYS 14 A O CYS 14 1_555 118.8 A SF4 65 B S3 SF4 1_555 A SF4 65 B FE2 SF4 1_555 A CYS 14 A O CYS 14 1_555 134.5 A SF4 65 B S4 SF4 1_555 A SF4 65 B FE2 SF4 1_555 A CYS 14 A O CYS 14 1_555 53.6 A CYS 17 A SG CYS 17 1_555 A SF4 65 B FE3 SF4 1_555 A SF4 65 B S1 SF4 1_555 102.2 A CYS 17 A SG CYS 17 1_555 A SF4 65 B FE3 SF4 1_555 A SF4 65 B S2 SF4 1_555 128.3 A SF4 65 B S1 SF4 1_555 A SF4 65 B FE3 SF4 1_555 A SF4 65 B S2 SF4 1_555 105.3 A CYS 17 A SG CYS 17 1_555 A SF4 65 B FE3 SF4 1_555 A SF4 65 B S4 SF4 1_555 113.8 A SF4 65 B S1 SF4 1_555 A SF4 65 B FE3 SF4 1_555 A SF4 65 B S4 SF4 1_555 107.2 A SF4 65 B S2 SF4 1_555 A SF4 65 B FE3 SF4 1_555 A SF4 65 B S4 SF4 1_555 98.6 A CYS 54 A SG CYS 54 1_555 A SF4 65 B FE4 SF4 1_555 A SF4 65 B S1 SF4 1_555 115.1 A CYS 54 A SG CYS 54 1_555 A SF4 65 B FE4 SF4 1_555 A SF4 65 B S2 SF4 1_555 119.7 A SF4 65 B S1 SF4 1_555 A SF4 65 B FE4 SF4 1_555 A SF4 65 B S2 SF4 1_555 104.0 A CYS 54 A SG CYS 54 1_555 A SF4 65 B FE4 SF4 1_555 A SF4 65 B S3 SF4 1_555 113.2 A SF4 65 B S1 SF4 1_555 A SF4 65 B FE4 SF4 1_555 A SF4 65 B S3 SF4 1_555 103.1 A SF4 65 B S2 SF4 1_555 A SF4 65 B FE4 SF4 1_555 A SF4 65 B S3 SF4 1_555 99.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 26 A O ALA 26 A N TYR 35 A N TYR 35 1 A A O H ASP ASP 7 9 0.23 1 A A OD2 HD2 ASP PRO 28 29 1.05 1 A A HA O MET LYS 27 33 1.07 1 A A HB2 HG22 ALA VAL 42 47 1.11 1 A A HB HB3 ILE ALA 20 50 1.19 1 A A O N ASP ASP 7 9 1.19 1 A A HG13 H ILE ALA 12 13 1.24 1 A A HA HG13 TYR VAL 5 36 1.25 1 A A HB3 HB3 GLU CYS 10 58 1.28 1 A A HG22 CZ VAL PHE 6 25 1.29 1 A A C H ASP ASP 7 9 1.32 1 A A HG12 HB VAL ILE 6 59 1.35 1 A A CG HD2 ASP PRO 28 29 1.39 1 A A O HG13 TYR ILE 5 59 1.41 1 A A O HB2 GLN GLU 44 48 1.47 1 A A O HA ASP GLU 28 32 1.53 1 A A HG11 O VAL CYS 6 58 1.54 1 A A HG3 O GLN ALA 8 34 1.59 1 A A O N ILE LYS 31 33 2.02 1 A A CA O MET LYS 27 33 2.06 1 A A CG2 CZ VAL PHE 6 25 2.15 1 A A C N ASP ASP 7 9 2.17 1 A ARG 2 0.089 SIDE CHAIN 1 A LYS 3 -123.94 -156.17 1 A PHE 4 165.92 177.08 1 A TYR 5 174.40 -160.02 1 A GLN 8 -0.86 -0.05 1 A ALA 13 161.87 25.77 1 A ILE 20 -63.43 7.78 1 A ALA 21 -178.15 66.19 1 A PRO 22 -73.57 32.76 1 A ALA 26 -174.62 112.47 1 A GLU 32 14.85 43.37 1 A CYS 58 -76.37 28.74 model building X-PLOR refinement X-PLOR phasing X-PLOR OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, NMR, MINIMIZED AVERAGE STRUCTURE 1 Y N 2 N N A SER 16 A SER 16 HELX_P A ALA 21 A ALA 21 1 1 6 A GLN 44 A GLN 44 HELX_P A THR 53 A THR 53 1 2 10 metalc 2.178 A CYS 11 A SG CYS 11 1_555 A SF4 65 B FE1 SF4 1_555 metalc 2.181 A CYS 14 A SG CYS 14 1_555 A SF4 65 B FE2 SF4 1_555 metalc 2.444 A CYS 14 A O CYS 14 1_555 A SF4 65 B FE2 SF4 1_555 metalc 2.179 A CYS 17 A SG CYS 17 1_555 A SF4 65 B FE3 SF4 1_555 metalc 2.179 A CYS 54 A SG CYS 54 1_555 A SF4 65 B FE4 SF4 1_555 ELECTRON TRANSPORT ELECTRON TRANSPORT, OXIDISED DESULFOVIBRIO AFRICANUS FERREDOXIN I, ELECTRON-TRANSFER PROTEIN, 4FE-4S CLUSTER FER1_DESAF UNP 1 1 P00210 ARKFYVDQDECIACESCVEIAPGAFAMDPEIEKAYVKDVEGASQEEVEEAMDTCPVQCIHWEDE 1 64 1DAX 1 64 P00210 A 1 1 64 2 anti-parallel A PHE 25 A PHE 25 A MET 27 A MET 27 A ALA 34 A ALA 34 A VAL 36 A VAL 36 BINDING SITE FOR RESIDUE SF4 A 65 A SF4 65 Software 7 A CYS 11 A CYS 11 7 1_555 A ILE 12 A ILE 12 7 1_555 A CYS 14 A CYS 14 7 1_555 A CYS 17 A CYS 17 7 1_555 A ALA 34 A ALA 34 7 1_555 A CYS 54 A CYS 54 7 1_555 A CYS 58 A CYS 58 7 1_555 1 P 1