0.00975
0.00000
0.00246
0.00000
0.02353
0.00000
0.00000
0.00000
0.03170
0.00000
0.00000
0.00000
Zhang, H.
Huang, K.
Li, Z.
Herzberg, O.
Structure 2 Function Project (S2F)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
104.17
90.00
102.570
42.490
32.540
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
Hg 2
200.590
MERCURY (II) ION
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
40
86
97
10.1002/(SICI)1097-0134(20000701)40:1<86::AID-PROT100>3.0.CO;2-Y
10813833
Crystal structure of YbaK protein from Haemophilus influenzae (HI1434) at 1.8 A resolution: functional implications.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100.0
1
CCD
1998-10-27
BRANDEIS
MAD
M
x-ray
1
1.0091
1.0
X12C
NSLS
1.0091
SYNCHROTRON
NSLS BEAMLINE X12C
17273.607
cysteinyl-tRNA(Pro) deacylase
1
man
polymer
200.590
MERCURY (II) ION
1
syn
non-polymer
18.015
water
171
nat
water
HI1434
no
yes
MTPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATAN(MSE)LNLKKAA
KSIGVKKVE(MSE)ADKDAAQKSTGYLVGGISPLGQKKRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGAEF
TDIVDE
MTPAIDLLKKQKIPFILHTYDHDPNNQHFGDEAAEKLGIDPNRSFKTLLVAENGDQKKLACFVLATANMLNLKKAAKSIG
VKKVEMADKDAAQKSTGYLVGGISPLGQKKRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGAEFTDIVDE
A
HI1434
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Haemophilus
Escherichia
sample
IMPACT I SYSTEM FROM NEW ENGLAND BIOLABS
YbaK
727
Haemophilus influenzae
562
Escherichia coli
B834
YCYB2
1
1.99
28.0
Structure 2 Function Project
S2F
repository
Initial release
Version format compliance
Version format compliance
1
0
2000-06-14
1
1
2008-04-27
1
2
2011-07-13
Y
RCSB
Y
RCSB
1999-11-03
REL
HG
MERCURY (II) ION
HOH
water
IUM
160
2
HG
HG
260
A
WAT
1
3
HOH
HOH
261
A
WAT
2
3
HOH
HOH
262
A
WAT
3
3
HOH
HOH
263
A
WAT
4
3
HOH
HOH
264
A
WAT
5
3
HOH
HOH
265
A
WAT
6
3
HOH
HOH
266
A
WAT
7
3
HOH
HOH
267
A
WAT
8
3
HOH
HOH
268
A
WAT
9
3
HOH
HOH
269
A
WAT
10
3
HOH
HOH
270
A
WAT
11
3
HOH
HOH
271
A
WAT
12
3
HOH
HOH
272
A
WAT
13
3
HOH
HOH
273
A
WAT
14
3
HOH
HOH
274
A
WAT
15
3
HOH
HOH
275
A
WAT
16
3
HOH
HOH
276
A
WAT
17
3
HOH
HOH
277
A
WAT
18
3
HOH
HOH
278
A
WAT
19
3
HOH
HOH
279
A
WAT
20
3
HOH
HOH
280
A
WAT
21
3
HOH
HOH
281
A
WAT
22
3
HOH
HOH
282
A
WAT
23
3
HOH
HOH
283
A
WAT
24
3
HOH
HOH
284
A
WAT
25
3
HOH
HOH
285
A
WAT
26
3
HOH
HOH
286
A
WAT
27
3
HOH
HOH
287
A
WAT
28
3
HOH
HOH
288
A
WAT
29
3
HOH
HOH
289
A
WAT
30
3
HOH
HOH
290
A
WAT
31
3
HOH
HOH
291
A
WAT
32
3
HOH
HOH
292
A
WAT
33
3
HOH
HOH
293
A
WAT
34
3
HOH
HOH
294
A
WAT
35
3
HOH
HOH
295
A
WAT
36
3
HOH
HOH
296
A
WAT
37
3
HOH
HOH
297
A
WAT
38
3
HOH
HOH
298
A
WAT
39
3
HOH
HOH
299
A
WAT
40
3
HOH
HOH
300
A
WAT
41
3
HOH
HOH
301
A
WAT
42
3
HOH
HOH
302
A
WAT
43
3
HOH
HOH
303
A
WAT
44
3
HOH
HOH
304
A
WAT
45
3
HOH
HOH
305
A
WAT
46
3
HOH
HOH
306
A
WAT
47
3
HOH
HOH
307
A
WAT
48
3
HOH
HOH
308
A
WAT
49
3
HOH
HOH
309
A
WAT
50
3
HOH
HOH
310
A
WAT
51
3
HOH
HOH
311
A
WAT
52
3
HOH
HOH
312
A
WAT
53
3
HOH
HOH
313
A
WAT
54
3
HOH
HOH
314
A
WAT
55
3
HOH
HOH
315
A
WAT
56
3
HOH
HOH
316
A
WAT
57
3
HOH
HOH
317
A
WAT
58
3
HOH
HOH
318
A
WAT
59
3
HOH
HOH
319
A
WAT
60
3
HOH
HOH
320
A
WAT
61
3
HOH
HOH
321
A
WAT
62
3
HOH
HOH
322
A
WAT
63
3
HOH
HOH
323
A
WAT
64
3
HOH
HOH
324
A
WAT
65
3
HOH
HOH
325
A
WAT
66
3
HOH
HOH
326
A
WAT
67
3
HOH
HOH
327
A
WAT
68
3
HOH
HOH
328
A
WAT
69
3
HOH
HOH
329
A
WAT
70
3
HOH
HOH
330
A
WAT
71
3
HOH
HOH
331
A
WAT
72
3
HOH
HOH
332
A
WAT
73
3
HOH
HOH
333
A
WAT
74
3
HOH
HOH
334
A
WAT
75
3
HOH
HOH
335
A
WAT
76
3
HOH
HOH
336
A
WAT
77
3
HOH
HOH
337
A
WAT
78
3
HOH
HOH
338
A
WAT
79
3
HOH
HOH
339
A
WAT
80
3
HOH
HOH
340
A
WAT
81
3
HOH
HOH
341
A
WAT
82
3
HOH
HOH
342
A
WAT
83
3
HOH
HOH
343
A
WAT
84
3
HOH
HOH
344
A
WAT
85
3
HOH
HOH
345
A
WAT
86
3
HOH
HOH
346
A
WAT
87
3
HOH
HOH
347
A
WAT
88
3
HOH
HOH
348
A
WAT
89
3
HOH
HOH
349
A
WAT
90
3
HOH
HOH
350
A
WAT
91
3
HOH
HOH
351
A
WAT
92
3
HOH
HOH
352
A
WAT
93
3
HOH
HOH
353
A
WAT
94
3
HOH
HOH
354
A
WAT
95
3
HOH
HOH
355
A
WAT
96
3
HOH
HOH
356
A
WAT
97
3
HOH
HOH
357
A
WAT
98
3
HOH
HOH
358
A
WAT
99
3
HOH
HOH
359
A
WAT
100
3
HOH
HOH
360
A
WAT
101
3
HOH
HOH
361
A
WAT
102
3
HOH
HOH
362
A
WAT
103
3
HOH
HOH
363
A
WAT
104
3
HOH
HOH
364
A
WAT
105
3
HOH
HOH
365
A
WAT
106
3
HOH
HOH
366
A
WAT
107
3
HOH
HOH
367
A
WAT
108
3
HOH
HOH
368
A
WAT
109
3
HOH
HOH
369
A
WAT
110
3
HOH
HOH
370
A
WAT
111
3
HOH
HOH
371
A
WAT
112
3
HOH
HOH
372
A
WAT
113
3
HOH
HOH
373
A
WAT
114
3
HOH
HOH
374
A
WAT
115
3
HOH
HOH
375
A
WAT
116
3
HOH
HOH
376
A
WAT
117
3
HOH
HOH
377
A
WAT
118
3
HOH
HOH
378
A
WAT
119
3
HOH
HOH
379
A
WAT
120
3
HOH
HOH
380
A
WAT
121
3
HOH
HOH
381
A
WAT
122
3
HOH
HOH
382
A
WAT
123
3
HOH
HOH
383
A
WAT
124
3
HOH
HOH
384
A
WAT
125
3
HOH
HOH
385
A
WAT
126
3
HOH
HOH
386
A
WAT
127
3
HOH
HOH
387
A
WAT
128
3
HOH
HOH
388
A
WAT
129
3
HOH
HOH
389
A
WAT
130
3
HOH
HOH
390
A
WAT
131
3
HOH
HOH
391
A
WAT
132
3
HOH
HOH
392
A
WAT
133
3
HOH
HOH
393
A
WAT
134
3
HOH
HOH
394
A
WAT
135
3
HOH
HOH
395
A
WAT
136
3
HOH
HOH
396
A
WAT
137
3
HOH
HOH
397
A
WAT
138
3
HOH
HOH
398
A
WAT
139
3
HOH
HOH
399
A
WAT
140
3
HOH
HOH
400
A
WAT
141
3
HOH
HOH
401
A
WAT
142
3
HOH
HOH
402
A
WAT
143
3
HOH
HOH
403
A
WAT
144
3
HOH
HOH
404
A
WAT
145
3
HOH
HOH
405
A
WAT
146
3
HOH
HOH
406
A
WAT
147
3
HOH
HOH
407
A
WAT
148
3
HOH
HOH
408
A
WAT
149
3
HOH
HOH
409
A
WAT
150
3
HOH
HOH
410
A
WAT
151
3
HOH
HOH
411
A
WAT
152
3
HOH
HOH
412
A
WAT
153
3
HOH
HOH
413
A
WAT
154
3
HOH
HOH
414
A
WAT
155
3
HOH
HOH
415
A
WAT
156
3
HOH
HOH
416
A
WAT
157
3
HOH
HOH
417
A
WAT
158
3
HOH
HOH
418
A
WAT
159
3
HOH
HOH
419
A
WAT
160
3
HOH
HOH
420
A
WAT
161
3
HOH
HOH
421
A
WAT
162
3
HOH
HOH
422
A
WAT
163
3
HOH
HOH
423
A
WAT
164
3
HOH
HOH
424
A
WAT
165
3
HOH
HOH
425
A
WAT
167
3
HOH
HOH
426
A
WAT
168
3
HOH
HOH
427
A
WAT
169
3
HOH
HOH
428
A
WAT
170
3
HOH
HOH
429
A
WAT
171
3
HOH
HOH
430
A
WAT
172
3
HOH
HOH
431
A
n
1
1
A
THR
2
n
2
THR
2
A
PRO
3
n
3
PRO
3
A
ALA
4
n
4
ALA
4
A
ILE
5
n
5
ILE
5
A
ASP
6
n
6
ASP
6
A
LEU
7
n
7
LEU
7
A
LEU
8
n
8
LEU
8
A
LYS
9
n
9
LYS
9
A
LYS
10
n
10
LYS
10
A
GLN
11
n
11
GLN
11
A
LYS
12
n
12
LYS
12
A
ILE
13
n
13
ILE
13
A
PRO
14
n
14
PRO
14
A
PHE
15
n
15
PHE
15
A
ILE
16
n
16
ILE
16
A
LEU
17
n
17
LEU
17
A
HIS
18
n
18
HIS
18
A
THR
19
n
19
THR
19
A
TYR
20
n
20
TYR
20
A
ASP
21
n
21
ASP
21
A
HIS
22
n
22
HIS
22
A
ASP
23
n
23
ASP
23
A
PRO
24
n
24
PRO
24
A
ASN
25
n
25
ASN
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
ASP
31
n
31
ASP
31
A
GLU
32
n
32
GLU
32
A
ALA
33
n
33
ALA
33
A
ALA
34
n
34
ALA
34
A
GLU
35
n
35
GLU
35
A
LYS
36
n
36
LYS
36
A
LEU
37
n
37
LEU
37
A
GLY
38
n
38
GLY
38
A
ILE
39
n
39
ILE
39
A
ASP
40
n
40
ASP
40
A
PRO
41
n
41
PRO
41
A
ASN
42
n
42
ASN
42
A
ARG
43
n
43
ARG
43
A
SER
44
n
44
SER
44
A
PHE
45
n
45
PHE
45
A
LYS
46
n
46
LYS
46
A
THR
47
n
47
THR
47
A
LEU
48
n
48
LEU
48
A
LEU
49
n
49
LEU
49
A
VAL
50
n
50
VAL
50
A
ALA
51
n
51
ALA
51
A
GLU
52
n
52
GLU
52
A
ASN
53
n
53
ASN
53
A
GLY
54
n
54
GLY
54
A
ASP
55
n
55
ASP
55
A
GLN
56
n
56
GLN
56
A
LYS
57
n
57
LYS
57
A
LYS
58
n
58
LYS
58
A
LEU
59
n
59
LEU
59
A
ALA
60
n
60
ALA
60
A
CYS
61
n
61
CYS
61
A
PHE
62
n
62
PHE
62
A
VAL
63
n
63
VAL
63
A
LEU
64
n
64
LEU
64
A
ALA
65
n
65
ALA
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
ASN
68
n
68
ASN
68
A
MET
69
n
69
MSE
69
A
LEU
70
n
70
LEU
70
A
ASN
71
n
71
ASN
71
A
LEU
72
n
72
LEU
72
A
LYS
73
n
73
LYS
73
A
LYS
74
n
74
LYS
74
A
ALA
75
n
75
ALA
75
A
ALA
76
n
76
ALA
76
A
LYS
77
n
77
LYS
77
A
SER
78
n
78
SER
78
A
ILE
79
n
79
ILE
79
A
GLY
80
n
80
GLY
80
A
VAL
81
n
81
VAL
81
A
LYS
82
n
82
LYS
82
A
LYS
83
n
83
LYS
83
A
VAL
84
n
84
VAL
84
A
GLU
85
n
85
GLU
85
A
MET
86
n
86
MSE
86
A
ALA
87
n
87
ALA
87
A
ASP
88
n
88
ASP
88
A
LYS
89
n
89
LYS
89
A
ASP
90
n
90
ASP
90
A
ALA
91
n
91
ALA
91
A
ALA
92
n
92
ALA
92
A
GLN
93
n
93
GLN
93
A
LYS
94
n
94
LYS
94
A
SER
95
n
95
SER
95
A
THR
96
n
96
THR
96
A
GLY
97
n
97
GLY
97
A
TYR
98
n
98
TYR
98
A
LEU
99
n
99
LEU
99
A
VAL
100
n
100
VAL
100
A
GLY
101
n
101
GLY
101
A
GLY
102
n
102
GLY
102
A
ILE
103
n
103
ILE
103
A
SER
104
n
104
SER
104
A
PRO
105
n
105
PRO
105
A
LEU
106
n
106
LEU
106
A
GLY
107
n
107
GLY
107
A
GLN
108
n
108
GLN
108
A
LYS
109
n
109
LYS
109
A
LYS
110
n
110
LYS
110
A
ARG
111
n
111
ARG
111
A
VAL
112
n
112
VAL
112
A
LYS
113
n
113
LYS
113
A
THR
114
n
114
THR
114
A
VAL
115
n
115
VAL
115
A
ILE
116
n
116
ILE
116
A
ASN
117
n
117
ASN
117
A
SER
118
n
118
SER
118
A
THR
119
n
119
THR
119
A
ALA
120
n
120
ALA
120
A
LEU
121
n
121
LEU
121
A
GLU
122
n
122
GLU
122
A
PHE
123
n
123
PHE
123
A
GLU
124
n
124
GLU
124
A
THR
125
n
125
THR
125
A
ILE
126
n
126
ILE
126
A
TYR
127
n
127
TYR
127
A
VAL
128
n
128
VAL
128
A
SER
129
n
129
SER
129
A
GLY
130
n
130
GLY
130
A
GLY
131
n
131
GLY
131
A
LYS
132
n
132
LYS
132
A
ARG
133
n
133
ARG
133
A
GLY
134
n
134
GLY
134
A
LEU
135
n
135
LEU
135
A
SER
136
n
136
SER
136
A
VAL
137
n
137
VAL
137
A
GLU
138
n
138
GLU
138
A
ILE
139
n
139
ILE
139
A
ALA
140
n
140
ALA
140
A
PRO
141
n
141
PRO
141
A
GLN
142
n
142
GLN
142
A
ASP
143
n
143
ASP
143
A
LEU
144
n
144
LEU
144
A
ALA
145
n
145
ALA
145
A
LYS
146
n
146
LYS
146
A
VAL
147
n
147
VAL
147
A
LEU
148
n
148
LEU
148
A
GLY
149
n
149
GLY
149
A
ALA
150
n
150
ALA
150
A
GLU
151
n
151
GLU
151
A
PHE
152
n
152
PHE
152
A
THR
153
n
153
THR
153
A
ASP
154
n
154
ASP
154
A
ILE
155
n
155
ILE
155
A
VAL
156
n
156
VAL
156
A
ASP
157
n
157
ASP
157
A
GLU
158
n
158
GLU
158
A
author_defined_assembly
1
monomeric
A
GLN
108
A
NE2
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
CYS
61
B
A
SG
CYS
61
1_555
63.6
A
GLN
108
A
NE2
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
GLN
108
A
OE1
GLN
108
1_555
38.7
A
CYS
61
B
A
SG
CYS
61
1_555
A
HG
260
B
HG
HG
1_555
A
GLN
108
A
OE1
GLN
108
1_555
61.1
A
GLN
108
A
NE2
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
THR
114
A
OG1
THR
114
1_555
170.9
A
CYS
61
B
A
SG
CYS
61
1_555
A
HG
260
B
HG
HG
1_555
A
THR
114
A
OG1
THR
114
1_555
107.4
A
GLN
108
A
OE1
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
THR
114
A
OG1
THR
114
1_555
139.2
A
GLN
108
A
NE2
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
415
C
O
HOH
1_555
77.0
A
CYS
61
B
A
SG
CYS
61
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
415
C
O
HOH
1_555
56.7
A
GLN
108
A
OE1
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
415
C
O
HOH
1_555
40.7
A
THR
114
A
OG1
THR
114
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
415
C
O
HOH
1_555
99.0
A
GLN
108
A
NE2
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
418
C
O
HOH
1_555
104.8
A
CYS
61
B
A
SG
CYS
61
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
418
C
O
HOH
1_555
133.9
A
GLN
108
A
OE1
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
418
C
O
HOH
1_555
82.2
A
THR
114
A
OG1
THR
114
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
418
C
O
HOH
1_555
82.0
A
HOH
415
C
O
HOH
1_555
A
HG
260
B
HG
HG
1_555
A
HOH
418
C
O
HOH
1_555
77.4
A
GLN
108
A
NE2
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
A
SG
CYS
61
1_555
78.0
A
CYS
61
B
A
SG
CYS
61
1_555
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
A
SG
CYS
61
1_555
40.3
A
GLN
108
A
OE1
GLN
108
1_555
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
A
SG
CYS
61
1_555
96.0
A
THR
114
A
OG1
THR
114
1_555
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
A
SG
CYS
61
1_555
94.4
A
HOH
415
C
O
HOH
1_555
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
A
SG
CYS
61
1_555
95.9
A
HOH
418
C
O
HOH
1_555
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
A
SG
CYS
61
1_555
171.8
A
MSE
69
SELENOMETHIONINE
A
MSE
69
MET
A
MSE
86
SELENOMETHIONINE
A
MSE
86
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
151
A
N
GLU
151
A
O
THR
114
A
O
THR
114
A
N
VAL
115
A
N
VAL
115
A
O
CYS
61
A
O
CYS
61
A
O
LEU
64
A
O
LEU
64
A
N
LYS
46
A
N
LYS
46
A
N
ALA
51
A
N
ALA
51
A
O
GLU
85
A
O
GLU
85
A
N
GLU
151
A
N
GLU
151
A
O
THR
114
A
O
THR
114
A
N
VAL
115
A
N
VAL
115
A
O
CYS
61
A
O
CYS
61
A
O
LEU
64
A
O
LEU
64
A
N
LYS
46
A
N
LYS
46
A
N
PHE
45
A
N
PHE
45
A
O
TYR
127
A
O
TYR
127
A
O
VAL
128
A
O
VAL
128
A
N
VAL
137
A
N
VAL
137
A
N
GLU
138
A
N
GLU
138
A
O
ILE
16
A
O
ILE
16
1
A
MET
1
A
MET
1
1
Y
1
A
ASN
26
A
ASN
26
1
Y
1
A
GLN
27
A
GLN
27
1
Y
1
A
HIS
28
A
HIS
28
1
Y
1
A
PHE
29
A
PHE
29
1
Y
1
A
GLY
30
A
GLY
30
1
Y
1
6.73
0.90
118.30
125.03
A
A
A
CB
CG
OD1
ASP
ASP
ASP
6
6
6
N
1
-5.56
0.90
118.30
112.74
A
A
A
CB
CG
OD2
ASP
ASP
ASP
6
6
6
N
1
6.19
0.90
118.30
124.49
A
A
A
CB
CG
OD2
ASP
ASP
ASP
21
21
21
N
1
14.59
2.20
113.40
127.99
A
A
A
CA
CB
CG
ASN
ASN
ASN
42
42
42
N
1
-14.74
2.20
111.50
96.76
A
A
A
N
CA
CB
VAL
VAL
VAL
84
84
84
N
1
18.19
2.30
115.30
133.49
A
A
A
CA
CB
CG
LEU
LEU
LEU
106
106
106
N
1
3.51
0.50
120.30
123.81
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
111
111
111
N
1
-3.86
0.50
120.30
116.44
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
133
133
133
B
B
B
N
1
3.43
0.50
120.30
123.73
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
133
133
133
B
B
B
N
1
7.28
0.90
118.30
125.58
A
A
A
CB
CG
OD1
ASP
ASP
ASP
154
154
154
N
1
A
PRO
24
-26.96
-33.71
1
A
ASN
53
48.22
29.18
0.262
0.193
1.8
20.0
1260
12727
10.0
99.6
RANDOM
1
free-R
0.0
0.0
MAD
0.173
0.171
1.8
20.0
171
1359
1
0
1187
0.013
0.020
0.032
0.040
20.9
1.8
20.0
1DBU
25089
-3.0
0.059
1
98.7
0.357
1.80
1.86
98.0
data reduction
DENZO
data scaling
SCALEPACK
phasing
MLPHARE
refinement
REFMAC
cysteinyl-tRNA(Pro) deacylase
Crystal structure of cysteinyl-tRNA(Pro) deacylase protein from H. influenzae (HI1434)
1
N
N
2
N
N
3
N
N
A
THR
2
A
THR
2
HELX_P
A
LYS
12
A
LYS
12
1
1
11
A
ASP
31
A
ASP
31
HELX_P
A
GLY
38
A
GLY
38
1
2
8
A
ASP
40
A
ASP
40
HELX_P
A
ASN
42
A
ASN
42
5
3
3
A
ASN
71
A
ASN
71
HELX_P
A
ILE
79
A
ILE
79
1
4
9
A
ASP
88
A
ASP
88
HELX_P
A
GLY
97
A
GLY
97
1
5
10
A
THR
119
A
THR
119
HELX_P
A
PHE
123
A
PHE
123
5
6
5
A
ALA
140
A
ALA
140
HELX_P
A
GLY
149
A
GLY
149
1
7
10
covale
1.329
A
ASN
68
A
C
ASN
68
1_555
A
MSE
69
A
N
MSE
69
1_555
covale
1.345
A
MSE
69
A
C
MSE
69
1_555
A
LEU
70
A
N
LEU
70
1_555
covale
1.332
A
GLU
85
A
C
GLU
85
1_555
A
MSE
86
A
N
MSE
86
1_555
covale
1.328
A
MSE
86
A
C
MSE
86
1_555
A
ALA
87
A
N
ALA
87
1_555
metalc
3.352
A
HG
260
B
HG
HG
1_555
A
GLN
108
A
NE2
GLN
108
1_555
metalc
3.005
B
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
SG
CYS
61
1_555
metalc
3.488
A
HG
260
B
HG
HG
1_555
A
GLN
108
A
OE1
GLN
108
1_555
metalc
2.774
A
HG
260
B
HG
HG
1_555
A
THR
114
A
OG1
THR
114
1_555
metalc
1.808
A
HG
260
B
HG
HG
1_555
A
HOH
415
C
O
HOH
1_555
metalc
2.741
A
HG
260
B
HG
HG
1_555
A
HOH
418
C
O
HOH
1_555
metalc
2.635
A
A
HG
260
B
HG
HG
1_555
A
CYS
61
A
SG
CYS
61
1_555
HYDROLASE
STRUCTURAL GENOMICS, YBAK, Structure 2 Function Project, S2F, HYDROLASE
Y1434_HAEIN
UNP
1
P45202
1
158
1DBU
1
158
P45202
A
1
1
158
1
MET
MODIFIED RESIDUE
MSE
69
1DBU
A
P45202
UNP
69
69
1
MET
MODIFIED RESIDUE
MSE
86
1DBU
A
P45202
UNP
86
86
1
LYS
SEE REMARK 999
ASN
117
1DBU
A
P45202
UNP
117
117
5
7
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLU
151
A
GLU
151
A
THR
153
A
THR
153
A
THR
114
A
THR
114
A
ASN
117
A
ASN
117
A
LEU
59
A
LEU
59
A
ALA
65
A
ALA
65
A
SER
44
A
SER
44
A
GLU
52
A
GLU
52
A
VAL
84
A
VAL
84
A
MSE
86
A
MSE
86
A
GLU
151
A
GLU
151
A
THR
153
A
THR
153
A
THR
114
A
THR
114
A
ASN
117
A
ASN
117
A
LEU
59
A
LEU
59
A
ALA
65
A
ALA
65
A
SER
44
A
SER
44
A
GLU
52
A
GLU
52
A
ILE
126
A
ILE
126
A
SER
129
A
SER
129
A
LEU
135
A
LEU
135
A
ILE
139
A
ILE
139
A
ILE
16
A
ILE
16
A
THR
19
A
THR
19
BINDING SITE FOR RESIDUE HG A 260
Software
6
A
CYS
61
A
CYS
61
6
1_555
A
PRO
105
A
PRO
105
6
1_555
A
GLN
108
A
GLN
108
6
1_555
A
THR
114
A
THR
114
6
1_555
A
HOH
415
C
HOH
6
1_555
A
HOH
418
C
HOH
6
1_555
5
C 1 2 1