1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kern, D. Volkman, B.F. Luginbuhl, P. Nohaile, M.J. Kustu, S. Wemmer, D.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C4 H8 N O7 P 213.083 n ASPARTYL PHOSPHATE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK Nature NATUAS 0006 0028-0836 402 894 898 10.1038/47273 10622255 Structure of a transiently phosphorylated switch in bacterial signal transduction. 1999 US Biochemistry BICHAW 0033 0006-2960 34 1413 1424 Three-Dimensional Solution Structure of the N-Terminal Receiver Domain of NTRC 1995 10.2210/pdb1dc8/pdb pdb_00001dc8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13716.585 NITROGEN REGULATION PROTEIN N-TERMINAL RECEIVER DOMAIN(1-124) D54(ASQ) 1 man polymer NTRC no yes MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLS(PHD)IRMPGMDGLALLKQIKQRHPML PVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Salmonella Escherichia Escherichia coli sample 602 Salmonella typhimurium 511693 Escherichia coli BL21 BL21 PJES592 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Database references 1 0 2000-01-05 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 1 4 2022-12-21 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE N-TERMINAL RECEIVER DOMAIN OF NTRC UNPHOSPHORYLATED NTRC RECEIVER DOMAIN RCSB Y RCSB 1999-11-04 REL REL PHOSPHORYLATION (>95%) COULD BE MAINTAINED FOR 36 HR. TO OBTAIN SUFFICIENT S/N IN 3D NOESY EXPERIMENTS, MULTIPLE (TYPICALLY 4) COMPLETE 3D DATASETS WERE ACQUIRED ON FRESHLY PREPARED SAMPLES AND THEN COADDED TO YIELD HIGH-QUALITY DATASETS FOR STRUCTURE DETERMINATION. 1 3D_15N-SEPARATED_NOESY 3D_13C-SEPARATED_NOESY 2D NOESY 250-500 mM 6.75 1 atm 298 K STRUCTURE BASED ON A TOTAL OF 1301 UNIQUE DISTANCE CONSTRAINTS (OBTAINED FROM 3095 NOE CROSSPEAKS), INCLUDING 374 INTRARESIDUE, 405 SHORT-RANGE, 228 MEDIUM RANGE AND 294 LONG-RANGE CONSTRAINTS. DYANA 1.5 ANNEAL COMMAND (10000 STEPS) USED TO GENERATE 40 CONFORMERS. 20 LOWEST TARGET FUNCTION STRUCTURES ANALYZED. CONFORMER 4 CHOSEN FOR DEPOSITION AS CLOSEST TO MEAN COORDINATES OF THE ENSEMBLE. torsion angle dynamics closest to the average 0.3 MM NTRC(1-124) U-15N; 200 MM SODIUM PHOSPHATE, PH 6.75; 50 MM MAGNESIUM CHLORIDE; 200 MM CARBAMOYLPHOSPHATE 0.3 MM NTRC(1-124) U-15N,13C; 200 MM SODIUM PHOSPHATE, PH 6.75; 50 MM MAGNESIUM CHLORIDE; 200 MM CARBAMOYLPHOSPHATE 0.3 MM NTRC(1-124) U-15N; 200 MM SODIUM PHOSPHATE, PH 6.75; 50 MM MAGNESIUM CHLORIDE; 200 MM CARBAMOYLPHOSPHATE PETER GUENTERT structure solution DYANA 1.5 MSI processing Felix 95.0 BRUKER collection XwinNMR 1.5 PETER GUENTERT data analysis DYANA 1.5 MUMENTHALER data analysis XEASY 1.3.13 PETER GUENTERT refinement DYANA 1.5 600 Bruker DMX 750 Bruker DMX MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ARG 3 n 3 ARG 3 A GLY 4 n 4 GLY 4 A ILE 5 n 5 ILE 5 A VAL 6 n 6 VAL 6 A TRP 7 n 7 TRP 7 A VAL 8 n 8 VAL 8 A VAL 9 n 9 VAL 9 A ASP 10 n 10 ASP 10 A ASP 11 n 11 ASP 11 A ASP 12 n 12 ASP 12 A SER 13 n 13 SER 13 A SER 14 n 14 SER 14 A ILE 15 n 15 ILE 15 A ARG 16 n 16 ARG 16 A TRP 17 n 17 TRP 17 A VAL 18 n 18 VAL 18 A LEU 19 n 19 LEU 19 A GLU 20 n 20 GLU 20 A ARG 21 n 21 ARG 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A ALA 24 n 24 ALA 24 A GLY 25 n 25 GLY 25 A ALA 26 n 26 ALA 26 A GLY 27 n 27 GLY 27 A LEU 28 n 28 LEU 28 A THR 29 n 29 THR 29 A CYS 30 n 30 CYS 30 A THR 31 n 31 THR 31 A THR 32 n 32 THR 32 A PHE 33 n 33 PHE 33 A GLU 34 n 34 GLU 34 A ASN 35 n 35 ASN 35 A GLY 36 n 36 GLY 36 A ASN 37 n 37 ASN 37 A GLU 38 n 38 GLU 38 A VAL 39 n 39 VAL 39 A LEU 40 n 40 LEU 40 A ALA 41 n 41 ALA 41 A ALA 42 n 42 ALA 42 A LEU 43 n 43 LEU 43 A ALA 44 n 44 ALA 44 A SER 45 n 45 SER 45 A LYS 46 n 46 LYS 46 A THR 47 n 47 THR 47 A PRO 48 n 48 PRO 48 A ASP 49 n 49 ASP 49 A VAL 50 n 50 VAL 50 A LEU 51 n 51 LEU 51 A LEU 52 n 52 LEU 52 A SER 53 n 53 SER 53 A ASP 54 n 54 PHD 54 A ILE 55 n 55 ILE 55 A ARG 56 n 56 ARG 56 A MET 57 n 57 MET 57 A PRO 58 n 58 PRO 58 A GLY 59 n 59 GLY 59 A MET 60 n 60 MET 60 A ASP 61 n 61 ASP 61 A GLY 62 n 62 GLY 62 A LEU 63 n 63 LEU 63 A ALA 64 n 64 ALA 64 A LEU 65 n 65 LEU 65 A LEU 66 n 66 LEU 66 A LYS 67 n 67 LYS 67 A GLN 68 n 68 GLN 68 A ILE 69 n 69 ILE 69 A LYS 70 n 70 LYS 70 A GLN 71 n 71 GLN 71 A ARG 72 n 72 ARG 72 A HIS 73 n 73 HIS 73 A PRO 74 n 74 PRO 74 A MET 75 n 75 MET 75 A LEU 76 n 76 LEU 76 A PRO 77 n 77 PRO 77 A VAL 78 n 78 VAL 78 A ILE 79 n 79 ILE 79 A ILE 80 n 80 ILE 80 A MET 81 n 81 MET 81 A THR 82 n 82 THR 82 A ALA 83 n 83 ALA 83 A HIS 84 n 84 HIS 84 A SER 85 n 85 SER 85 A ASP 86 n 86 ASP 86 A LEU 87 n 87 LEU 87 A ASP 88 n 88 ASP 88 A ALA 89 n 89 ALA 89 A ALA 90 n 90 ALA 90 A VAL 91 n 91 VAL 91 A SER 92 n 92 SER 92 A ALA 93 n 93 ALA 93 A TYR 94 n 94 TYR 94 A GLN 95 n 95 GLN 95 A GLN 96 n 96 GLN 96 A GLY 97 n 97 GLY 97 A ALA 98 n 98 ALA 98 A PHE 99 n 99 PHE 99 A ASP 100 n 100 ASP 100 A TYR 101 n 101 TYR 101 A LEU 102 n 102 LEU 102 A PRO 103 n 103 PRO 103 A LYS 104 n 104 LYS 104 A PRO 105 n 105 PRO 105 A PHE 106 n 106 PHE 106 A ASP 107 n 107 ASP 107 A ILE 108 n 108 ILE 108 A ASP 109 n 109 ASP 109 A GLU 110 n 110 GLU 110 A ALA 111 n 111 ALA 111 A VAL 112 n 112 VAL 112 A ALA 113 n 113 ALA 113 A LEU 114 n 114 LEU 114 A VAL 115 n 115 VAL 115 A GLU 116 n 116 GLU 116 A ARG 117 n 117 ARG 117 A ALA 118 n 118 ALA 118 A ILE 119 n 119 ILE 119 A SER 120 n 120 SER 120 A HIS 121 n 121 HIS 121 A TYR 122 n 122 TYR 122 A GLN 123 n 123 GLN 123 A GLU 124 n 124 GLU 124 A author_defined_assembly 1 monomeric A PHD 54 ASPARTYL PHOSPHATE A PHD 54 ASP 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A P PHD 54 A P PHD 54 1 Y 1 A OP1 PHD 54 A OP1 PHD 54 1 Y 1 A OP2 PHD 54 A OP2 PHD 54 1 Y 1 A OP3 PHD 54 A OP3 PHD 54 1 Y 1 A A O H ILE VAL 108 112 1.49 1 A A O H ILE LEU 15 19 1.54 1 A A O H ASP ALA 109 113 1.57 1 A ASP 11 -166.49 31.46 1 A ASP 12 -62.13 -79.73 1 A SER 13 -154.99 -44.69 1 A SER 14 -174.95 41.73 1 A LEU 28 174.95 147.88 1 A THR 29 55.61 109.33 1 A GLU 34 -95.82 -76.87 1 A ASN 37 -59.81 -74.16 1 A LYS 46 -97.65 -78.25 1 A THR 47 71.31 103.78 1 A PRO 48 -75.00 -162.46 1 A LEU 52 -104.78 -157.62 1 A SER 53 167.01 89.73 1 A ILE 55 -176.04 -146.17 1 A ARG 56 175.50 38.98 1 A MET 60 -139.57 -82.26 1 A ASP 61 50.41 165.04 1 A ALA 64 34.23 -139.33 1 A LEU 65 -46.19 -89.98 1 A LEU 66 154.84 -25.20 1 A LYS 67 -80.13 -72.39 1 A LYS 70 -52.23 -91.81 1 A HIS 73 -165.39 84.00 1 A ILE 79 35.37 -147.73 1 A THR 82 161.85 120.67 1 A ALA 83 -83.93 -143.94 1 A HIS 84 45.96 -156.80 1 A ASP 86 179.30 55.69 1 A VAL 91 -137.62 -60.26 1 A GLN 95 -179.06 44.94 1 A GLN 96 -174.47 -89.93 1 A ALA 98 93.97 131.98 1 A TYR 101 -176.29 140.97 1 A LYS 104 55.52 171.30 1 A PHE 106 -51.61 -171.52 STRUCTURE OF A TRANSIENTLY PHOSPHORYLATED "SWITCH" IN BACTERIAL SIGNAL TRANSDUCTION 1 N N A ILE 15 A ILE 15 HELX_P A ALA 24 A ALA 24 1 1 10 A GLY 25 A GLY 25 HELX_P A GLY 27 A GLY 27 5 2 3 A GLY 36 A GLY 36 HELX_P A ALA 42 A ALA 42 1 3 7 A GLN 68 A GLN 68 HELX_P A HIS 73 A HIS 73 1 4 6 A ILE 108 A ILE 108 HELX_P A SER 120 A SER 120 1 5 13 A HIS 121 A HIS 121 HELX_P A GLN 123 A GLN 123 5 6 3 covale 1.326 both A SER 53 A C SER 53 1_555 A PHD 54 A N PHD 54 1_555 covale 1.325 both A PHD 54 A C PHD 54 1_555 A ILE 55 A N ILE 55 1_555 SIGNALING PROTEIN RECEIVER DOMAIN, PHOSPHORYLATION, SIGNAL TRANSDUCTION, CONFORMATIONAL REARRANGEMENT, TWO-COMPONENT SYSTEM, SIGNALING PROTEIN NTRC_SALTY UNP 1 P41789 1 124 1DC8 1 124 P41789 A 1 1 124 1 ASP modified residue PHD 54 1DC8 A P41789 UNP 54 54 1 P 1