0.015038
0.000000
0.006948
0.000000
0.042553
0.000000
0.000000
0.000000
0.014325
0.00000
0.00000
0.00000
Eichman, B.F.
Vargason, J.M.
Mooers, B.H.M.
Ho, P.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
114.80
90.00
66.500
23.500
76.900
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
NA
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
97
3971
3976
10.1073/pnas.97.8.3971
10760268
The Holliday junction in an inverted repeat DNA sequence: sequence effects on the structure of four-way junctions.
2000
10.2210/pdb1dcw/pdb
pdb_00001dcw
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93.0
1
CCD
1999-10-08
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.100
1.0
5.0.2
ALS
1.100
SYNCHROTRON
ALS BEAMLINE 5.0.2
3045.992
DNA (5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3')
4
syn
polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
91
nat
water
no
no
(DC)(DC)(DG)(DG)(DT)(DA)(DC)(DC)(DG)(DG)
CCGGTACCGG
A,B,C,D
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
1
2.24
45.05
7.00
MPD, CACL2, SODIUM CACODYLATE, pH 7.00
CACL2
1
SODIUM CACODYLATE
1
MPD
1
MPD
2
-3.786
1
19
A
1
D
10
-1.566
A_DC1:DG10_D
1
-16.666
0.513
0.349
-0.058
2.811
1
19
A
2
D
9
-1.733
A_DC2:DG9_D
2
-5.369
0.197
0.214
-0.401
-0.185
1
19
A
3
D
8
-4.215
A_DG3:DC8_D
3
-5.491
-0.271
0.268
-0.164
0.177
1
19
A
4
D
7
4.040
A_DG4:DC7_D
4
-12.156
-0.565
0.392
0.006
-7.598
1
20
A
5
B
6
-6.812
A_DT5:DA6_B
5
-11.751
0.216
0.304
-0.052
6.124
1
20
A
6
B
5
-7.691
A_DA6:DT5_B
6
-7.988
0.492
-0.006
-0.157
-1.020
1
19
A
7
B
4
-4.647
A_DC7:DG4_B
7
-17.165
0.316
0.318
-0.267
-5.572
1
19
A
8
B
3
-1.222
A_DC8:DG3_B
8
-3.171
0.284
-0.089
-0.153
-4.353
1
19
A
9
B
2
-3.215
A_DG9:DC2_B
9
-5.843
0.132
-0.158
-0.259
4.092
1
19
A
10
B
1
-7.561
A_DG10:DC1_B
10
-10.456
0.335
0.013
-0.315
-6.711
1
19
C
1
B
10
2.300
C_DC1:DG10_B
11
-12.020
0.206
0.701
-0.014
2.823
1
19
C
2
B
9
-0.773
C_DC2:DG9_B
12
-5.268
0.280
0.199
-0.358
-1.318
1
19
C
3
B
8
0.279
C_DG3:DC8_B
13
-6.216
-0.175
0.371
-0.202
-1.384
1
19
C
4
B
7
4.816
C_DG4:DC7_B
14
-14.253
-0.552
0.433
-0.084
-5.097
1
20
C
5
D
6
-8.680
C_DT5:DA6_D
15
-10.436
0.238
0.122
-0.164
7.753
1
20
C
6
D
5
-8.055
C_DA6:DT5_D
16
-7.954
0.320
0.086
-0.146
1.647
1
19
C
7
D
4
-2.894
C_DC7:DG4_D
17
-13.984
0.217
0.378
-0.241
1.338
1
19
C
8
D
3
-2.757
C_DC8:DG3_D
18
-6.593
0.263
-0.111
-0.273
-4.572
1
19
C
9
D
2
-2.670
C_DG9:DC2_D
19
-8.973
0.112
0.034
-0.321
5.491
1
19
C
10
D
1
-4.540
C_DG10:DC1_D
20
-9.545
0.122
0.410
-0.251
3.650
39.941
A
A
1
2
9.526
D
D
10
9
3.351
6.468
0.069
2.259
AA_DC1DC2:DG9DG10_DD
1
4.424
-6.515
39.196
2.502
0.450
3.347
35.912
A
A
2
3
-3.496
D
D
9
8
3.514
-2.154
0.111
2.811
AA_DC2DG3:DC8DG9_DD
2
0.597
-0.969
35.845
4.883
-0.091
3.657
42.811
A
A
3
4
4.504
D
D
8
7
3.523
3.277
-0.131
2.095
AA_DG3DG4:DC7DC8_DD
3
-5.388
7.406
42.366
2.509
-0.414
3.479
35.034
A
A
4
5
4.196
D
B
7
6
3.492
2.523
-0.749
-0.516
AA_DG4DT5:DA6DC7_BD
4
-1.710
2.844
34.906
-1.261
0.970
3.241
33.533
A
A
5
6
3.488
B
B
6
5
3.179
2.010
0.059
1.195
AA_DT5DA6:DT5DA6_BB
5
2.241
-3.890
33.401
1.746
0.260
3.547
35.619
A
A
6
7
0.957
B
B
5
4
3.513
0.584
-0.424
0.560
AA_DA6DC7:DG4DT5_BB
6
-4.489
7.357
35.340
0.823
-0.014
3.673
39.283
A
A
7
8
3.232
B
B
4
3
3.469
2.158
0.990
1.577
AA_DC7DC8:DG3DG4_BB
7
7.859
-11.770
38.461
2.063
-0.440
3.472
38.444
A
A
8
9
3.066
B
B
3
2
3.333
2.018
-0.068
2.840
AA_DC8DG9:DC2DG3_BB
8
0.345
-0.524
38.391
4.052
0.148
3.500
38.051
A
A
9
10
7.315
B
B
2
1
3.217
4.739
-0.494
2.244
AA_DG9DG10:DC1DC2_BB
9
-5.976
9.225
37.306
2.817
-0.030
3.414
42.616
C
C
1
2
6.794
B
B
10
9
3.240
4.902
-0.023
2.252
CC_DC1DC2:DG9DG10_BB
10
7.767
-10.764
41.660
2.590
0.837
3.417
38.006
C
C
2
3
-3.700
B
B
9
8
3.599
-2.408
0.342
2.862
CC_DC2DG3:DC8DG9_BB
11
-0.046
0.071
37.932
4.724
-0.532
3.617
41.011
C
C
3
4
2.522
B
B
8
7
3.533
1.764
-0.147
2.149
CC_DG3DG4:DC7DC8_BB
12
-3.947
5.644
40.792
2.857
-0.262
3.229
35.710
C
C
4
5
8.591
B
D
7
6
3.329
5.250
-0.870
-0.540
CC_DG4DT5:DA6DC7_DB
13
-0.472
0.772
35.331
-1.646
1.349
3.202
31.549
C
C
5
6
-1.040
D
D
6
5
3.222
-0.565
0.106
1.184
CC_DT5DA6:DT5DA6_DD
14
1.011
-1.860
31.529
2.281
-0.010
3.510
35.730
C
C
6
7
1.511
D
D
5
4
3.491
0.926
-0.255
0.441
CC_DA6DC7:DG4DT5_DD
15
-3.361
5.485
35.565
0.575
-0.105
3.657
39.965
C
C
7
8
8.128
D
D
4
3
3.388
5.499
0.752
1.646
CC_DC7DC8:DG3DG4_DD
16
8.561
-12.654
38.700
1.716
-0.022
3.502
39.352
C
C
8
9
0.112
D
D
3
2
3.501
0.076
0.002
2.815
CC_DC8DG9:DC2DG3_DD
17
-1.934
2.873
39.306
4.171
-0.249
3.307
38.384
C
C
9
10
-0.128
D
D
2
1
3.314
-0.083
-0.301
2.220
CC_DG9DG10:DC1DC2_DD
18
-7.401
11.323
37.691
3.387
-0.485
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-04-17
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
CCGCTAGCGG
RCSB
Y
RCSB
1999-11-05
REL
REL
NA
SODIUM ION
HOH
water
NA
11
2
NA
NA
11
D
HOH
15
3
HOH
HOH
15
A
HOH
18
3
HOH
HOH
18
A
HOH
19
3
HOH
HOH
19
A
HOH
21
3
HOH
HOH
21
A
HOH
37
3
HOH
HOH
37
A
HOH
38
3
HOH
HOH
38
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
42
3
HOH
HOH
42
A
HOH
44
3
HOH
HOH
44
A
HOH
45
3
HOH
HOH
45
A
HOH
51
3
HOH
HOH
51
A
HOH
52
3
HOH
HOH
52
A
HOH
54
3
HOH
HOH
54
A
HOH
79
3
HOH
HOH
79
A
HOH
80
3
HOH
HOH
80
A
HOH
87
3
HOH
HOH
87
A
HOH
88
3
HOH
HOH
88
A
HOH
89
3
HOH
HOH
89
A
HOH
92
3
HOH
HOH
92
A
HOH
94
3
HOH
HOH
94
A
HOH
95
3
HOH
HOH
95
A
HOH
96
3
HOH
HOH
96
A
HOH
100
3
HOH
HOH
100
A
HOH
101
3
HOH
HOH
101
A
HOH
102
3
HOH
HOH
102
A
HOH
13
3
HOH
HOH
13
B
HOH
20
3
HOH
HOH
20
B
HOH
22
3
HOH
HOH
22
B
HOH
23
3
HOH
HOH
23
B
HOH
24
3
HOH
HOH
24
B
HOH
32
3
HOH
HOH
32
B
HOH
33
3
HOH
HOH
33
B
HOH
43
3
HOH
HOH
43
B
HOH
50
3
HOH
HOH
50
B
HOH
58
3
HOH
HOH
58
B
HOH
61
3
HOH
HOH
61
B
HOH
66
3
HOH
HOH
66
B
HOH
69
3
HOH
HOH
69
B
HOH
74
3
HOH
HOH
74
B
HOH
75
3
HOH
HOH
75
B
HOH
76
3
HOH
HOH
76
B
HOH
81
3
HOH
HOH
81
B
HOH
84
3
HOH
HOH
84
B
HOH
86
3
HOH
HOH
86
B
HOH
90
3
HOH
HOH
90
B
HOH
91
3
HOH
HOH
91
B
HOH
93
3
HOH
HOH
93
B
HOH
12
3
HOH
HOH
12
C
HOH
14
3
HOH
HOH
14
C
HOH
25
3
HOH
HOH
25
C
HOH
26
3
HOH
HOH
26
C
HOH
31
3
HOH
HOH
31
C
HOH
39
3
HOH
HOH
39
C
HOH
53
3
HOH
HOH
53
C
HOH
57
3
HOH
HOH
57
C
HOH
59
3
HOH
HOH
59
C
HOH
60
3
HOH
HOH
60
C
HOH
63
3
HOH
HOH
63
C
HOH
64
3
HOH
HOH
64
C
HOH
65
3
HOH
HOH
65
C
HOH
67
3
HOH
HOH
67
C
HOH
68
3
HOH
HOH
68
C
HOH
72
3
HOH
HOH
72
C
HOH
82
3
HOH
HOH
82
C
HOH
83
3
HOH
HOH
83
C
HOH
97
3
HOH
HOH
97
C
HOH
98
3
HOH
HOH
98
C
HOH
99
3
HOH
HOH
99
C
HOH
16
3
HOH
HOH
16
D
HOH
17
3
HOH
HOH
17
D
HOH
27
3
HOH
HOH
27
D
HOH
28
3
HOH
HOH
28
D
HOH
29
3
HOH
HOH
29
D
HOH
30
3
HOH
HOH
30
D
HOH
34
3
HOH
HOH
34
D
HOH
35
3
HOH
HOH
35
D
HOH
36
3
HOH
HOH
36
D
HOH
46
3
HOH
HOH
46
D
HOH
47
3
HOH
HOH
47
D
HOH
48
3
HOH
HOH
48
D
HOH
49
3
HOH
HOH
49
D
HOH
55
3
HOH
HOH
55
D
HOH
56
3
HOH
HOH
56
D
HOH
62
3
HOH
HOH
62
D
HOH
70
3
HOH
HOH
70
D
HOH
71
3
HOH
HOH
71
D
HOH
73
3
HOH
HOH
73
D
HOH
77
3
HOH
HOH
77
D
HOH
78
3
HOH
HOH
78
D
HOH
85
3
HOH
HOH
85
D
C
1
n
1
DC
1
A
C
2
n
2
DC
2
A
G
3
n
3
DG
3
A
G
4
n
4
DG
4
A
T
5
n
5
DT
5
A
A
6
n
6
DA
6
A
C
7
n
7
DC
7
A
C
8
n
8
DC
8
A
G
9
n
9
DG
9
A
G
10
n
10
DG
10
A
C
1
n
1
DC
1
B
C
2
n
2
DC
2
B
G
3
n
3
DG
3
B
G
4
n
4
DG
4
B
T
5
n
5
DT
5
B
A
6
n
6
DA
6
B
C
7
n
7
DC
7
B
C
8
n
8
DC
8
B
G
9
n
9
DG
9
B
G
10
n
10
DG
10
B
C
1
n
1
DC
1
C
C
2
n
2
DC
2
C
G
3
n
3
DG
3
C
G
4
n
4
DG
4
C
T
5
n
5
DT
5
C
A
6
n
6
DA
6
C
C
7
n
7
DC
7
C
C
8
n
8
DC
8
C
G
9
n
9
DG
9
C
G
10
n
10
DG
10
C
C
1
n
1
DC
1
D
C
2
n
2
DC
2
D
G
3
n
3
DG
3
D
G
4
n
4
DG
4
D
T
5
n
5
DT
5
D
A
6
n
6
DA
6
D
C
7
n
7
DC
7
D
C
8
n
8
DC
8
D
G
9
n
9
DG
9
D
G
10
n
10
DG
10
D
author_defined_assembly
4
tetrameric
B
DA
6
B
OP2
DA
6
1_555
D
NA
11
E
NA
NA
1_555
D
DA
6
D
OP2
DA
6
1_555
125.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
HOH
38
F
HOH
1
A
DA
6
0.084
SIDE CHAIN
1
A
DC
7
0.068
SIDE CHAIN
1
B
DC
2
0.066
SIDE CHAIN
1
B
DG
3
0.083
SIDE CHAIN
1
B
DG
4
0.081
SIDE CHAIN
1
B
DC
8
0.067
SIDE CHAIN
1
B
DG
10
0.093
SIDE CHAIN
1
C
DG
9
0.058
SIDE CHAIN
1
D
DG
3
0.088
SIDE CHAIN
1
D
DG
4
0.080
SIDE CHAIN
1
7.27
1.10
110.50
117.77
A
A
A
O3'
P
OP2
DT
DA
DA
5
6
6
Y
1
9.87
1.10
109.80
119.67
A
A
A
C5'
C4'
O4'
DC
DC
DC
7
7
7
N
1
9.82
1.10
109.80
119.62
C
C
C
C5'
C4'
O4'
DC
DC
DC
7
7
7
N
1
7.55
1.10
109.80
117.35
C
C
C
C5'
C4'
O4'
DG
DG
DG
10
10
10
N
1
-5.61
0.90
105.70
100.09
D
D
D
O5'
P
OP1
DC
DC
DC
7
7
7
N
1
A
A
C4'
C3'
DC
DC
7
7
-0.082
0.010
1.521
1.439
N
1
A
A
N1
C2
DC
DC
8
8
-0.060
0.010
1.397
1.337
N
1
B
B
N3
C4
DC
DC
8
8
-0.044
0.007
1.335
1.291
N
1
C
C
C4
C5
DT
DT
5
5
-0.056
0.009
1.445
1.389
N
1
C
C
N3
C4
DC
DC
7
7
-0.052
0.007
1.335
1.283
N
-8.5841
0.0000
-1.8465
16.8867
0.0000
-8.3025
ANISOTROPIC B VALUES WERE APPLIED TO FCALC DURING REFINEMENT IN ORDER TO SCALE FCALC TO FOBS
0.3170000
0.2300000
0.2300000
2.10
8.00
598
5723
10.000
88.9
RANDOM
1
THROUGHOUT
3.000
2.10
8.00
91
900
1
808
0
0.017
1.90
2.19
55
450
8
68.0
21.60
2.100
30.160
1DCW
6322
0.000
0.0450000
1
15.6000
2.900
97.4
0.2180000
2.10
2.18
2.7
2.70
96.7
phasing
AMoRE
refinement
X-PLOR
3.851
data reduction
DENZO
data scaling
SCALEPACK
STRUCTURE OF A FOUR-WAY JUNCTION IN AN INVERTED REPEAT SEQUENCE.
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
metalc
2.547
B
DA
6
B
OP2
DA
6
1_555
D
NA
11
E
NA
NA
1_555
metalc
2.504
D
DA
6
D
OP2
DA
6
1_555
D
NA
11
E
NA
NA
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
D
DG
10
D
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
D
DG
10
D
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
D
DG
10
D
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N3
DC
2
1_555
D
DG
9
D
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
N4
DC
2
1_555
D
DG
9
D
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
2
A
O2
DC
2
1_555
D
DG
9
D
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N1
DG
3
1_555
D
DC
8
D
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
N2
DG
3
1_555
D
DC
8
D
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
3
A
O6
DG
3
1_555
D
DC
8
D
N4
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
D
DC
7
D
N3
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
D
DC
7
D
O2
DC
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
D
DC
7
D
N4
DC
7
1_555
hydrog
WATSON-CRICK
A
DT
5
A
N3
DT
5
1_555
B
DA
6
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
5
A
O4
DT
5
1_555
B
DA
6
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N1
DA
6
1_555
B
DT
5
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
6
A
N6
DA
6
1_555
B
DT
5
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N3
DC
7
1_555
B
DG
4
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
N4
DC
7
1_555
B
DG
4
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
7
A
O2
DC
7
1_555
B
DG
4
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N3
DC
8
1_555
B
DG
3
B
N1
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
N4
DC
8
1_555
B
DG
3
B
O6
DG
3
1_555
hydrog
WATSON-CRICK
A
DC
8
A
O2
DC
8
1_555
B
DG
3
B
N2
DG
3
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
2
B
N3
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
2
B
O2
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
2
B
N4
DC
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
1
B
N4
DC
1
1_555
hydrog
WATSON-CRICK
B
DC
7
B
N3
DC
7
1_555
C
DG
4
C
N1
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
7
B
N4
DC
7
1_555
C
DG
4
C
O6
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
7
B
O2
DC
7
1_555
C
DG
4
C
N2
DG
4
1_555
hydrog
WATSON-CRICK
B
DC
8
B
N3
DC
8
1_555
C
DG
3
C
N1
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
8
B
N4
DC
8
1_555
C
DG
3
C
O6
DG
3
1_555
hydrog
WATSON-CRICK
B
DC
8
B
O2
DC
8
1_555
C
DG
3
C
N2
DG
3
1_555
hydrog
WATSON-CRICK
B
DG
9
B
N1
DG
9
1_555
C
DC
2
C
N3
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
9
B
N2
DG
9
1_555
C
DC
2
C
O2
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
9
B
O6
DG
9
1_555
C
DC
2
C
N4
DC
2
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N1
DG
10
1_555
C
DC
1
C
N3
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
10
B
N2
DG
10
1_555
C
DC
1
C
O2
DC
1
1_555
hydrog
WATSON-CRICK
B
DG
10
B
O6
DG
10
1_555
C
DC
1
C
N4
DC
1
1_555
hydrog
WATSON-CRICK
C
DT
5
C
N3
DT
5
1_555
D
DA
6
D
N1
DA
6
1_555
hydrog
WATSON-CRICK
C
DT
5
C
O4
DT
5
1_555
D
DA
6
D
N6
DA
6
1_555
hydrog
WATSON-CRICK
C
DA
6
C
N1
DA
6
1_555
D
DT
5
D
N3
DT
5
1_555
hydrog
WATSON-CRICK
C
DA
6
C
N6
DA
6
1_555
D
DT
5
D
O4
DT
5
1_555
hydrog
WATSON-CRICK
C
DC
7
C
N3
DC
7
1_555
D
DG
4
D
N1
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
7
C
N4
DC
7
1_555
D
DG
4
D
O6
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
7
C
O2
DC
7
1_555
D
DG
4
D
N2
DG
4
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N3
DC
8
1_555
D
DG
3
D
N1
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
8
C
N4
DC
8
1_555
D
DG
3
D
O6
DG
3
1_555
hydrog
WATSON-CRICK
C
DC
8
C
O2
DC
8
1_555
D
DG
3
D
N2
DG
3
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N1
DG
9
1_555
D
DC
2
D
N3
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
9
C
N2
DG
9
1_555
D
DC
2
D
O2
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
9
C
O6
DG
9
1_555
D
DC
2
D
N4
DC
2
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N1
DG
10
1_555
D
DC
1
D
N3
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
10
C
N2
DG
10
1_555
D
DC
1
D
O2
DC
1
1_555
hydrog
WATSON-CRICK
C
DG
10
C
O6
DG
10
1_555
D
DC
1
D
N4
DC
1
1_555
DNA
HOLLIDAY JUNCTION, INVERTED REPEAT, FOUR-WAY JUNCTION, DEOXYRIBONUCLEIC ACID, DNA
1DCW
PDB
1
1DCW
1
10
1DCW
1
10
1DCW
A
1
1
10
1
10
1DCW
1
10
1DCW
B
1
1
10
1
10
1DCW
1
10
1DCW
C
1
1
10
1
10
1DCW
1
10
1DCW
D
1
1
10
BINDING SITE FOR RESIDUE NA D 11
D
NA
11
Software
2
B
DA
6
B
DA
6
2
1_555
D
DA
6
D
DA
6
2
1_555
5
monoclinic
C 1 2 1