1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Zhu, L. Huang, H. Reid, B.R. Drobny, G.P. Hopkins, P.B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 Cl2 H6 N2 Pt 300.045 Cisplatin diammine(dichloro)platinum non-polymer C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking N 1 N PT N 2 N N N 3 N N N 4 N H N 5 N H N 6 N H N 7 N H N 8 N CL N 9 N CL N 10 N H N 11 N H N 12 N O N 13 N P N 14 N O N 15 N O N 16 N O N 17 N C N 18 R C N 19 N O N 20 S C N 21 N O N 22 N C N 23 R C Y 24 N N Y 25 N C Y 26 N N Y 27 N C Y 28 N C N 29 N N Y 30 N N Y 31 N C Y 32 N N Y 33 N C N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N O N 49 N P N 50 N O N 51 N O N 52 N O N 53 N C N 54 R C N 55 N O N 56 S C N 57 N O N 58 N C N 59 R C N 60 N N N 61 N C N 62 N O N 63 N N N 64 N C N 65 N N N 66 N C N 67 N C N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N O N 83 N P N 84 N O N 85 N O N 86 N O N 87 N C N 88 R C N 89 N O N 90 S C N 91 N O N 92 N C N 93 R C Y 94 N N Y 95 N C Y 96 N N Y 97 N C N 98 N C N 99 N O N 100 N N N 101 N C N 102 N N N 103 N N Y 104 N C N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N O N 120 N P N 121 N O N 122 N O N 123 N O N 124 N C N 125 R C N 126 N O N 127 S C N 128 N O N 129 N C N 130 R C N 131 N N N 132 N C N 133 N O N 134 N N N 135 N C N 136 N O N 137 N C N 138 N C N 139 N C N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing Y 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing Y 39 N sing Y 40 N doub N 41 N sing Y 42 N doub N 43 N sing N 44 N sing Y 45 N sing Y 46 N doub N 47 N sing Y 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N doub N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing Y 107 N sing Y 108 N sing Y 109 N doub N 110 N sing Y 111 N sing N 112 N sing Y 113 N doub N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing US Science SCIEAS 0038 0036-8075 270 1842 1845 8525382 Solution structure of a cisplatin-induced DNA interstrand cross-link. 1995 10.2210/pdb1ddp/pdb pdb_00001ddp 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3044.016 DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3') 2 syn polymer CHEMICALLY SYNTHESIZED 300.045 Cisplatin 1 syn non-polymer DEOXYRIBONUCLEIC ACID no no (DC)(DA)(DT)(DA)(DG)(DC)(DT)(DA)(DT)(DG) CATAGCTATG A,B polydeoxyribonucleotide n n n n n n n n n n -12.460 1 19 A 1 B 10 -1.696 A_DC1:DG10_B 1 -2.647 0.984 0.657 -0.347 -1.699 1 20 A 2 B 9 0.415 A_DA2:DT9_B 2 -8.707 -0.343 0.608 -0.186 1.136 1 20 A 3 B 8 0.464 A_DT3:DA8_B 3 -6.778 0.150 0.494 -0.082 19.716 1 20 A 4 B 7 -1.971 A_DA4:DT7_B 4 -5.088 0.256 0.596 0.007 -19.467 1 20 A 7 B 4 -1.922 A_DT7:DA4_B 5 -4.908 -0.261 0.605 0.004 -0.578 1 20 A 8 B 3 0.488 A_DA8:DT3_B 6 -6.791 -0.152 0.504 -0.084 2.458 1 20 A 9 B 2 0.941 A_DT9:DA2_B 7 -8.721 0.322 0.615 -0.181 13.179 1 19 A 10 B 1 -2.843 A_DG10:DC1_B 8 -3.222 -0.889 0.693 -0.330 2.738 40.366 A A 1 2 -4.242 B B 10 9 2.736 -2.925 0.016 -0.117 AA_DC1DA2:DT9DG10_BB 1 0.552 -0.800 40.261 0.106 0.029 3.162 33.101 A A 2 3 -1.185 B B 9 8 3.144 -0.675 0.107 -0.927 AA_DA2DT3:DA8DT9_BB 2 0.350 -0.615 33.093 -1.517 -0.131 2.573 31.465 A A 3 4 0.357 B B 8 7 2.589 0.194 0.415 -0.762 AA_DT3DA4:DT7DA8_BB 3 -0.801 1.478 31.455 -1.434 -0.884 2.565 31.429 A A 7 8 0.090 B B 4 3 2.578 0.049 -0.403 -0.773 AA_DT7DA8:DT3DA4_BB 4 0.838 -1.548 31.418 -1.434 0.867 3.163 33.135 A A 8 9 -1.431 B B 3 2 3.140 -0.816 -0.055 -0.947 AA_DA8DT9:DA2DT3_BB 5 -0.420 0.737 33.122 -1.528 0.027 2.723 41.125 A A 9 10 -3.887 B B 2 1 2.714 -2.728 -0.113 -0.198 AA_DT9DG10:DC1DA2_BB 6 -0.942 1.342 41.028 -0.035 0.077 chem_comp_atom chem_comp_bond database_2 entity pdbx_database_status pdbx_entity_src_syn pdbx_nmr_software struct_site repository Initial release Version format compliance Non-polymer description Version format compliance Data collection Database references Derived calculations Other Source and taxonomy Structure summary 1 0 1996-03-08 1 1 2008-03-24 1 2 2011-07-13 1 3 2024-03-13 _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.details _pdbx_database_status.process_site _pdbx_nmr_software.name _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y BNL 1995-10-26 REL CPT Cisplatin CHEMICALLY SYNTHESIZED sample BECAUSE THE BOND LENGTH BETWEEN PT AND N7 IN THE CISPLATIN CROSS-LINK IS LONGER THAN 2.00 ANGSTROMS, THE PT-N7 BONDS MIGHT NOT APPEAR WHEN A PROGRAM READS THIS ENTRY. 10 FINAL RMS COORD. SHIFT 0.55 ANGSTROMS NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 643 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 AMBER FORCE FIELDS USED BIOSYM TECHNOLOGIES refinement Discover CPT 1 2 CPT CPT 11 A C 1 n 1 DC 1 A A 2 n 2 DA 2 A T 3 n 3 DT 3 A A 4 n 4 DA 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A T 7 n 7 DT 7 A A 8 n 8 DA 8 A T 9 n 9 DT 9 A G 10 n 10 DG 10 A C 1 n 1 DC 1 B A 2 n 2 DA 2 B T 3 n 3 DT 3 B A 4 n 4 DA 4 B G 5 n 5 DG 5 B C 6 n 6 DC 6 B T 7 n 7 DT 7 B A 8 n 8 DA 8 B T 9 n 9 DT 9 B G 10 n 10 DG 10 B author_defined_assembly 2 dimeric A DG 5 A N7 DG 5 1_555 A CPT 11 C PT1 CPT 1_555 A CPT 11 C N1 CPT 1_555 89.0 A DG 5 A N7 DG 5 1_555 A CPT 11 C PT1 CPT 1_555 A CPT 11 C N2 CPT 1_555 178.8 A CPT 11 C N1 CPT 1_555 A CPT 11 C PT1 CPT 1_555 A CPT 11 C N2 CPT 1_555 89.9 A DG 5 A N7 DG 5 1_555 A CPT 11 C PT1 CPT 1_555 B DG 5 B N7 DG 5 1_555 92.2 A CPT 11 C N1 CPT 1_555 A CPT 11 C PT1 CPT 1_555 B DG 5 B N7 DG 5 1_555 178.8 A CPT 11 C N2 CPT 1_555 A CPT 11 C PT1 CPT 1_555 B DG 5 B N7 DG 5 1_555 89.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DA 2 0.054 SIDE CHAIN 1 A DT 3 0.063 SIDE CHAIN 1 A DG 5 0.074 SIDE CHAIN 1 A DA 8 0.054 SIDE CHAIN 1 B DA 2 0.052 SIDE CHAIN 1 B DT 3 0.063 SIDE CHAIN 1 B DG 5 0.074 SIDE CHAIN 1 B DA 8 0.055 SIDE CHAIN 2 A DA 2 0.057 SIDE CHAIN 2 A DT 3 0.065 SIDE CHAIN 2 A DG 5 0.073 SIDE CHAIN 2 A DA 8 0.058 SIDE CHAIN 2 B DA 2 0.054 SIDE CHAIN 2 B DT 3 0.066 SIDE CHAIN 2 B DG 5 0.074 SIDE CHAIN 2 B DA 8 0.056 SIDE CHAIN 3 A DA 2 0.052 SIDE CHAIN 3 A DT 3 0.062 SIDE CHAIN 3 A DG 5 0.073 SIDE CHAIN 3 A DA 8 0.054 SIDE CHAIN 3 B DA 2 0.054 SIDE CHAIN 3 B DT 3 0.063 SIDE CHAIN 3 B DG 5 0.074 SIDE CHAIN 3 B DA 8 0.057 SIDE CHAIN 4 A DT 3 0.064 SIDE CHAIN 4 A DG 5 0.071 SIDE CHAIN 4 A DA 8 0.053 SIDE CHAIN 4 B DA 2 0.056 SIDE CHAIN 4 B DG 5 0.073 SIDE CHAIN 4 B DA 8 0.056 SIDE CHAIN 5 A DG 5 0.073 SIDE CHAIN 5 A DG 10 0.060 SIDE CHAIN 5 B DA 2 0.055 SIDE CHAIN 5 B DT 3 0.064 SIDE CHAIN 5 B DG 5 0.071 SIDE CHAIN 6 A DT 3 0.064 SIDE CHAIN 6 A DG 5 0.072 SIDE CHAIN 6 A DA 8 0.060 SIDE CHAIN 6 A DG 10 0.062 SIDE CHAIN 6 B DA 2 0.090 SIDE CHAIN 6 B DG 5 0.073 SIDE CHAIN 6 B DA 8 0.056 SIDE CHAIN 7 A DA 2 0.055 SIDE CHAIN 7 A DT 3 0.064 SIDE CHAIN 7 A DG 5 0.074 SIDE CHAIN 7 A DG 10 0.060 SIDE CHAIN 7 B DT 3 0.060 SIDE CHAIN 7 B DG 5 0.072 SIDE CHAIN 7 B DA 8 0.055 SIDE CHAIN 8 A DA 2 0.054 SIDE CHAIN 8 A DT 3 0.064 SIDE CHAIN 8 A DG 5 0.073 SIDE CHAIN 8 A DA 8 0.054 SIDE CHAIN 8 A DG 10 0.059 SIDE CHAIN 8 B DA 2 0.057 SIDE CHAIN 8 B DT 3 0.064 SIDE CHAIN 8 B DG 5 0.073 SIDE CHAIN 8 B DA 8 0.055 SIDE CHAIN 9 A DA 2 0.053 SIDE CHAIN 9 A DT 3 0.065 SIDE CHAIN 9 A DG 5 0.074 SIDE CHAIN 9 A DA 8 0.055 SIDE CHAIN 9 B DT 3 0.062 SIDE CHAIN 9 B DG 5 0.073 SIDE CHAIN 9 B DA 8 0.056 SIDE CHAIN 10 A DT 3 0.063 SIDE CHAIN 10 A DG 5 0.072 SIDE CHAIN 10 A DA 8 0.055 SIDE CHAIN 10 B DA 2 0.052 SIDE CHAIN 10 B DT 3 0.064 SIDE CHAIN 10 B DG 5 0.073 SIDE CHAIN 10 B DA 8 0.056 SIDE CHAIN 1 2.51 0.30 108.30 110.81 A A A O4' C1' N1 DT DT DT 3 3 3 N 1 5.89 0.30 108.30 114.19 A A A O4' C1' N9 DA DA DA 4 4 4 N 1 2.99 0.30 108.30 111.29 A A A O4' C1' N9 DG DG DG 5 5 5 N 1 3.29 0.30 108.30 111.59 A A A O4' C1' N1 DC DC DC 6 6 6 N 1 2.13 0.30 108.30 110.43 A A A O4' C1' N1 DT DT DT 7 7 7 N 1 2.04 0.30 108.30 110.34 A A A O4' C1' N9 DA DA DA 8 8 8 N 1 3.60 0.30 108.30 111.90 A A A O4' C1' N1 DT DT DT 9 9 9 N 1 2.73 0.30 108.30 111.03 B B B O4' C1' N1 DC DC DC 1 1 1 N 1 2.46 0.30 108.30 110.76 B B B O4' C1' N1 DT DT DT 3 3 3 N 1 5.91 0.30 108.30 114.21 B B B O4' C1' N9 DA DA DA 4 4 4 N 1 2.98 0.30 108.30 111.28 B B B O4' C1' N9 DG DG DG 5 5 5 N 1 3.31 0.30 108.30 111.61 B B B O4' C1' N1 DC DC DC 6 6 6 N 1 2.21 0.30 108.30 110.51 B B B O4' C1' N1 DT DT DT 7 7 7 N 1 2.03 0.30 108.30 110.33 B B B O4' C1' N9 DA DA DA 8 8 8 N 1 3.57 0.30 108.30 111.87 B B B O4' C1' N1 DT DT DT 9 9 9 N 2 2.47 0.30 108.30 110.77 A A A O4' C1' N1 DT DT DT 3 3 3 N 2 5.92 0.30 108.30 114.22 A A A O4' C1' N9 DA DA DA 4 4 4 N 2 2.99 0.30 108.30 111.29 A A A O4' C1' N9 DG DG DG 5 5 5 N 2 3.87 0.30 108.30 112.17 A A A O4' C1' N1 DC DC DC 6 6 6 N 2 2.03 0.30 108.30 110.33 A A A O4' C1' N1 DT DT DT 7 7 7 N 2 1.95 0.30 108.30 110.25 A A A O4' C1' N9 DA DA DA 8 8 8 N 2 3.48 0.30 108.30 111.78 A A A O4' C1' N1 DT DT DT 9 9 9 N 2 2.48 0.30 108.30 110.78 B B B O4' C1' N1 DT DT DT 3 3 3 N 2 5.95 0.30 108.30 114.25 B B B O4' C1' N9 DA DA DA 4 4 4 N 2 3.11 0.30 108.30 111.41 B B B O4' C1' N9 DG DG DG 5 5 5 N 2 3.33 0.30 108.30 111.63 B B B O4' C1' N1 DC DC DC 6 6 6 N 2 2.16 0.30 108.30 110.46 B B B O4' C1' N1 DT DT DT 7 7 7 N 2 1.95 0.30 108.30 110.25 B B B O4' C1' N9 DA DA DA 8 8 8 N 2 3.54 0.30 108.30 111.84 B B B O4' C1' N1 DT DT DT 9 9 9 N 3 2.50 0.30 108.30 110.80 A A A O4' C1' N1 DT DT DT 3 3 3 N 3 5.87 0.30 108.30 114.17 A A A O4' C1' N9 DA DA DA 4 4 4 N 3 2.98 0.30 108.30 111.28 A A A O4' C1' N9 DG DG DG 5 5 5 N 3 3.83 0.30 108.30 112.13 A A A O4' C1' N1 DC DC DC 6 6 6 N 3 2.02 0.30 108.30 110.32 A A A O4' C1' N1 DT DT DT 7 7 7 N 3 2.11 0.30 108.30 110.41 A A A O4' C1' N9 DA DA DA 8 8 8 N 3 3.57 0.30 108.30 111.87 A A A O4' C1' N1 DT DT DT 9 9 9 N 3 2.74 0.30 108.30 111.04 B B B O4' C1' N1 DC DC DC 1 1 1 N 3 2.54 0.30 108.30 110.84 B B B O4' C1' N1 DT DT DT 3 3 3 N 3 5.95 0.30 108.30 114.25 B B B O4' C1' N9 DA DA DA 4 4 4 N 3 3.05 0.30 108.30 111.35 B B B O4' C1' N9 DG DG DG 5 5 5 N 3 3.33 0.30 108.30 111.63 B B B O4' C1' N1 DC DC DC 6 6 6 N 3 2.11 0.30 108.30 110.41 B B B O4' C1' N1 DT DT DT 7 7 7 N 3 1.89 0.30 108.30 110.19 B B B O4' C1' N9 DA DA DA 8 8 8 N 3 3.28 0.30 108.30 111.58 B B B O4' C1' N1 DT DT DT 9 9 9 N 4 2.68 0.30 108.30 110.98 A A A O4' C1' N1 DC DC DC 1 1 1 N 4 2.49 0.30 108.30 110.79 A A A O4' C1' N1 DT DT DT 3 3 3 N 4 6.08 0.30 108.30 114.38 A A A O4' C1' N9 DA DA DA 4 4 4 N 4 2.96 0.30 108.30 111.26 A A A O4' C1' N9 DG DG DG 5 5 5 N 4 3.39 0.30 108.30 111.69 A A A O4' C1' N1 DC DC DC 6 6 6 N 4 2.02 0.30 108.30 110.32 A A A O4' C1' N1 DT DT DT 7 7 7 N 4 1.89 0.30 108.30 110.19 A A A O4' C1' N9 DA DA DA 8 8 8 N 4 3.32 0.30 108.30 111.62 A A A O4' C1' N1 DT DT DT 9 9 9 N 4 2.71 0.30 108.30 111.01 B B B O4' C1' N1 DC DC DC 1 1 1 N 4 1.94 0.30 108.30 110.24 B B B O4' C1' N9 DA DA DA 2 2 2 N 4 5.56 0.30 108.30 113.86 B B B O4' C1' N1 DT DT DT 3 3 3 N 4 5.57 0.30 108.30 113.87 B B B O4' C1' N9 DA DA DA 4 4 4 N 4 2.82 0.30 108.30 111.12 B B B O4' C1' N9 DG DG DG 5 5 5 N 4 3.99 0.30 108.30 112.29 B B B O4' C1' N1 DC DC DC 6 6 6 N 4 2.10 0.30 108.30 110.40 B B B O4' C1' N1 DT DT DT 7 7 7 N 4 2.09 0.30 108.30 110.39 B B B O4' C1' N9 DA DA DA 8 8 8 N 4 3.58 0.30 108.30 111.88 B B B O4' C1' N1 DT DT DT 9 9 9 N 5 2.63 0.30 108.30 110.93 A A A O4' C1' N1 DC DC DC 1 1 1 N 5 1.99 0.30 108.30 110.29 A A A O4' C1' N9 DA DA DA 2 2 2 N 5 5.69 0.30 108.30 113.99 A A A O4' C1' N1 DT DT DT 3 3 3 N 5 5.54 0.30 108.30 113.84 A A A O4' C1' N9 DA DA DA 4 4 4 N 5 2.84 0.30 108.30 111.14 A A A O4' C1' N9 DG DG DG 5 5 5 N 5 3.37 0.30 108.30 111.67 A A A O4' C1' N1 DC DC DC 6 6 6 N 5 2.21 0.30 108.30 110.51 A A A O4' C1' N1 DT DT DT 7 7 7 N 5 2.06 0.30 108.30 110.36 A A A O4' C1' N9 DA DA DA 8 8 8 N 5 3.71 0.30 108.30 112.01 A A A O4' C1' N1 DT DT DT 9 9 9 N 5 2.71 0.30 108.30 111.01 B B B O4' C1' N1 DC DC DC 1 1 1 N 5 2.51 0.30 108.30 110.81 B B B O4' C1' N1 DT DT DT 3 3 3 N 5 6.03 0.30 108.30 114.33 B B B O4' C1' N9 DA DA DA 4 4 4 N 5 2.97 0.30 108.30 111.27 B B B O4' C1' N9 DG DG DG 5 5 5 N 5 3.33 0.30 108.30 111.63 B B B O4' C1' N1 DC DC DC 6 6 6 N 5 2.06 0.30 108.30 110.36 B B B O4' C1' N1 DT DT DT 7 7 7 N 5 1.97 0.30 108.30 110.27 B B B O4' C1' N9 DA DA DA 8 8 8 N 5 3.23 0.30 108.30 111.53 B B B O4' C1' N1 DT DT DT 9 9 9 N 6 2.68 0.30 108.30 110.98 A A A O4' C1' N1 DC DC DC 1 1 1 N 6 2.48 0.30 108.30 110.78 A A A O4' C1' N1 DT DT DT 3 3 3 N 6 6.06 0.30 108.30 114.36 A A A O4' C1' N9 DA DA DA 4 4 4 N 6 2.88 0.30 108.30 111.18 A A A O4' C1' N9 DG DG DG 5 5 5 N 6 3.33 0.30 108.30 111.63 A A A O4' C1' N1 DC DC DC 6 6 6 N 6 2.18 0.30 108.30 110.48 A A A O4' C1' N1 DT DT DT 7 7 7 N 6 1.83 0.30 108.30 110.13 A A A O4' C1' N9 DA DA DA 8 8 8 N 6 3.63 0.30 108.30 111.93 A A A O4' C1' N1 DT DT DT 9 9 9 N 6 2.66 0.30 108.30 110.96 B B B O4' C1' N1 DC DC DC 1 1 1 N 6 3.33 0.30 108.30 111.63 B B B O4' C1' N1 DT DT DT 3 3 3 N 6 5.60 0.30 108.30 113.90 B B B O4' C1' N9 DA DA DA 4 4 4 N 6 2.88 0.30 108.30 111.18 B B B O4' C1' N9 DG DG DG 5 5 5 N 6 3.43 0.30 108.30 111.73 B B B O4' C1' N1 DC DC DC 6 6 6 N 6 2.24 0.30 108.30 110.54 B B B O4' C1' N1 DT DT DT 7 7 7 N 6 1.97 0.30 108.30 110.27 B B B O4' C1' N9 DA DA DA 8 8 8 N 6 3.59 0.30 108.30 111.89 B B B O4' C1' N1 DT DT DT 9 9 9 N 7 2.75 0.30 108.30 111.05 A A A O4' C1' N1 DC DC DC 1 1 1 N 7 2.49 0.30 108.30 110.79 A A A O4' C1' N1 DT DT DT 3 3 3 N 7 5.92 0.30 108.30 114.22 A A A O4' C1' N9 DA DA DA 4 4 4 N 7 3.09 0.30 108.30 111.39 A A A O4' C1' N9 DG DG DG 5 5 5 N 7 3.35 0.30 108.30 111.65 A A A O4' C1' N1 DC DC DC 6 6 6 N 7 2.13 0.30 108.30 110.43 A A A O4' C1' N1 DT DT DT 7 7 7 N 7 2.06 0.30 108.30 110.36 A A A O4' C1' N9 DA DA DA 8 8 8 N 7 3.71 0.30 108.30 112.01 A A A O4' C1' N1 DT DT DT 9 9 9 N 7 2.86 0.30 108.30 111.16 B B B O4' C1' N1 DC DC DC 1 1 1 N 7 2.66 0.30 108.30 110.96 B B B O4' C1' N1 DT DT DT 3 3 3 N 7 5.99 0.30 108.30 114.29 B B B O4' C1' N9 DA DA DA 4 4 4 N 7 3.03 0.30 108.30 111.33 B B B O4' C1' N9 DG DG DG 5 5 5 N 7 3.61 0.30 108.30 111.91 B B B O4' C1' N1 DC DC DC 6 6 6 N 7 1.97 0.30 108.30 110.27 B B B O4' C1' N1 DT DT DT 7 7 7 N 7 2.08 0.30 108.30 110.38 B B B O4' C1' N9 DA DA DA 8 8 8 N 7 3.54 0.30 108.30 111.84 B B B O4' C1' N1 DT DT DT 9 9 9 N 8 2.68 0.30 108.30 110.98 A A A O4' C1' N1 DC DC DC 1 1 1 N 8 2.57 0.30 108.30 110.87 A A A O4' C1' N1 DT DT DT 3 3 3 N 8 6.03 0.30 108.30 114.33 A A A O4' C1' N9 DA DA DA 4 4 4 N 8 3.08 0.30 108.30 111.38 A A A O4' C1' N9 DG DG DG 5 5 5 N 8 3.35 0.30 108.30 111.65 A A A O4' C1' N1 DC DC DC 6 6 6 N 8 2.17 0.30 108.30 110.47 A A A O4' C1' N1 DT DT DT 7 7 7 N 8 1.99 0.30 108.30 110.29 A A A O4' C1' N9 DA DA DA 8 8 8 N 8 3.59 0.30 108.30 111.89 A A A O4' C1' N1 DT DT DT 9 9 9 N 8 4.51 0.30 108.30 112.81 B B B O4' C1' N1 DC DC DC 1 1 1 N 8 2.46 0.30 108.30 110.76 B B B O4' C1' N1 DT DT DT 3 3 3 N 8 5.92 0.30 108.30 114.22 B B B O4' C1' N9 DA DA DA 4 4 4 N 8 2.99 0.30 108.30 111.29 B B B O4' C1' N9 DG DG DG 5 5 5 N 8 3.88 0.30 108.30 112.18 B B B O4' C1' N1 DC DC DC 6 6 6 N 8 2.02 0.30 108.30 110.32 B B B O4' C1' N1 DT DT DT 7 7 7 N 8 2.07 0.30 108.30 110.37 B B B O4' C1' N9 DA DA DA 8 8 8 N 8 3.57 0.30 108.30 111.87 B B B O4' C1' N1 DT DT DT 9 9 9 N 9 4.35 0.30 108.30 112.65 A A A O4' C1' N1 DC DC DC 1 1 1 N 9 2.48 0.30 108.30 110.78 A A A O4' C1' N1 DT DT DT 3 3 3 N 9 5.97 0.30 108.30 114.27 A A A O4' C1' N9 DA DA DA 4 4 4 N 9 3.10 0.30 108.30 111.40 A A A O4' C1' N9 DG DG DG 5 5 5 N 9 3.33 0.30 108.30 111.63 A A A O4' C1' N1 DC DC DC 6 6 6 N 9 2.19 0.30 108.30 110.49 A A A O4' C1' N1 DT DT DT 7 7 7 N 9 1.91 0.30 108.30 110.21 A A A O4' C1' N9 DA DA DA 8 8 8 N 9 3.51 0.30 108.30 111.81 A A A O4' C1' N1 DT DT DT 9 9 9 N 9 2.72 0.30 108.30 111.02 B B B O4' C1' N1 DC DC DC 1 1 1 N 9 2.48 0.30 108.30 110.78 B B B O4' C1' N1 DT DT DT 3 3 3 N 9 5.90 0.30 108.30 114.20 B B B O4' C1' N9 DA DA DA 4 4 4 N 9 2.96 0.30 108.30 111.26 B B B O4' C1' N9 DG DG DG 5 5 5 N 9 3.88 0.30 108.30 112.18 B B B O4' C1' N1 DC DC DC 6 6 6 N 9 1.98 0.30 108.30 110.28 B B B O4' C1' N1 DT DT DT 7 7 7 N 9 2.04 0.30 108.30 110.34 B B B O4' C1' N9 DA DA DA 8 8 8 N 9 3.62 0.30 108.30 111.92 B B B O4' C1' N1 DT DT DT 9 9 9 N 10 4.33 0.30 108.30 112.63 A A A O4' C1' N1 DC DC DC 1 1 1 N 10 2.51 0.30 108.30 110.81 A A A O4' C1' N1 DT DT DT 3 3 3 N 10 5.93 0.30 108.30 114.23 A A A O4' C1' N9 DA DA DA 4 4 4 N 10 3.01 0.30 108.30 111.31 A A A O4' C1' N9 DG DG DG 5 5 5 N 10 3.93 0.30 108.30 112.23 A A A O4' C1' N1 DC DC DC 6 6 6 N 10 2.04 0.30 108.30 110.34 A A A O4' C1' N1 DT DT DT 7 7 7 N 10 2.08 0.30 108.30 110.38 A A A O4' C1' N9 DA DA DA 8 8 8 N 10 3.55 0.30 108.30 111.85 A A A O4' C1' N1 DT DT DT 9 9 9 N 10 2.68 0.30 108.30 110.98 B B B O4' C1' N1 DC DC DC 1 1 1 N 10 2.48 0.30 108.30 110.78 B B B O4' C1' N1 DT DT DT 3 3 3 N 10 6.00 0.30 108.30 114.30 B B B O4' C1' N9 DA DA DA 4 4 4 N 10 3.03 0.30 108.30 111.33 B B B O4' C1' N9 DG DG DG 5 5 5 N 10 3.30 0.30 108.30 111.60 B B B O4' C1' N1 DC DC DC 6 6 6 N 10 2.11 0.30 108.30 110.41 B B B O4' C1' N1 DT DT DT 7 7 7 N 10 1.84 0.30 108.30 110.14 B B B O4' C1' N9 DA DA DA 8 8 8 N 10 3.43 0.30 108.30 111.73 B B B O4' C1' N1 DT DT DT 9 9 9 N refinement AMBER Solution structure of a CISPLATIN-INDUCED [CATAGCTATG]2 Interstrand cross-link 1 N N 1 N N 2 N N metalc 2.013 A DG 5 A N7 DG 5 1_555 A CPT 11 C PT1 CPT 1_555 metalc 2.014 A CPT 11 C PT1 CPT 1_555 B DG 5 B N7 DG 5 1_555 hydrog DC-DT MISPAIR A DC 1 A N4 DC 1 1_555 B DT 9 B O4 DT 9 1_555 hydrog WATSON-CRICK A DC 1 A N3 DC 1 1_555 B DG 10 B N1 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A N4 DC 1 1_555 B DG 10 B O6 DG 10 1_555 hydrog WATSON-CRICK A DC 1 A O2 DC 1 1_555 B DG 10 B N2 DG 10 1_555 hydrog WATSON-CRICK A DA 2 A N1 DA 2 1_555 B DT 9 B N3 DT 9 1_555 hydrog WATSON-CRICK A DA 2 A N6 DA 2 1_555 B DT 9 B O4 DT 9 1_555 hydrog WATSON-CRICK A DT 3 A N3 DT 3 1_555 B DA 8 B N1 DA 8 1_555 hydrog WATSON-CRICK A DT 3 A O4 DT 3 1_555 B DA 8 B N6 DA 8 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 B DT 7 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 B DT 7 B O4 DT 7 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 B DA 4 B N1 DA 4 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 B DA 4 B N6 DA 4 1_555 hydrog WATSON-CRICK A DA 8 A N1 DA 8 1_555 B DT 3 B N3 DT 3 1_555 hydrog WATSON-CRICK A DA 8 A N6 DA 8 1_555 B DT 3 B O4 DT 3 1_555 hydrog DT-DC MISPAIR A DT 9 A O4 DT 9 1_555 B DC 1 B N4 DC 1 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 B DA 2 B N1 DA 2 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 B DA 2 B N6 DA 2 1_555 hydrog WATSON-CRICK A DG 10 A N1 DG 10 1_555 B DC 1 B N3 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A N2 DG 10 1_555 B DC 1 B O2 DC 1 1_555 hydrog WATSON-CRICK A DG 10 A O6 DG 10 1_555 B DC 1 B N4 DC 1 1_555 DNA DNA, DOUBLE HELIX, ANTITUMOR DRUG, CIS-DDP, INTERSTRAND CROSS-LINK 1DDP PDB 1 1DDP 1 10 1DDP 1 10 1DDP A 1 1 10 1 10 1DDP 1 10 1DDP B 1 1 10 BINDING SITE FOR RESIDUE CPT A 11 A CPT 11 Software 2 A DG 5 A DG 5 2 1_555 B DG 5 B DG 5 2 1_555 1 P 1