1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zhu, L.
Huang, H.
Reid, B.R.
Drobny, G.P.
Hopkins, P.B.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
Cl2 H6 N2 Pt
300.045
Cisplatin
diammine(dichloro)platinum
non-polymer
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
PT
N
2
N
N
N
3
N
N
N
4
N
H
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
CL
N
9
N
CL
N
10
N
H
N
11
N
H
N
12
N
O
N
13
N
P
N
14
N
O
N
15
N
O
N
16
N
O
N
17
N
C
N
18
R
C
N
19
N
O
N
20
S
C
N
21
N
O
N
22
N
C
N
23
R
C
Y
24
N
N
Y
25
N
C
Y
26
N
N
Y
27
N
C
Y
28
N
C
N
29
N
N
Y
30
N
N
Y
31
N
C
Y
32
N
N
Y
33
N
C
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
O
N
49
N
P
N
50
N
O
N
51
N
O
N
52
N
O
N
53
N
C
N
54
R
C
N
55
N
O
N
56
S
C
N
57
N
O
N
58
N
C
N
59
R
C
N
60
N
N
N
61
N
C
N
62
N
O
N
63
N
N
N
64
N
C
N
65
N
N
N
66
N
C
N
67
N
C
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
O
N
83
N
P
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
C
N
88
R
C
N
89
N
O
N
90
S
C
N
91
N
O
N
92
N
C
N
93
R
C
Y
94
N
N
Y
95
N
C
Y
96
N
N
Y
97
N
C
N
98
N
C
N
99
N
O
N
100
N
N
N
101
N
C
N
102
N
N
N
103
N
N
Y
104
N
C
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
O
N
120
N
P
N
121
N
O
N
122
N
O
N
123
N
O
N
124
N
C
N
125
R
C
N
126
N
O
N
127
S
C
N
128
N
O
N
129
N
C
N
130
R
C
N
131
N
N
N
132
N
C
N
133
N
O
N
134
N
N
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
Y
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
Y
39
N
sing
Y
40
N
doub
N
41
N
sing
Y
42
N
doub
N
43
N
sing
N
44
N
sing
Y
45
N
sing
Y
46
N
doub
N
47
N
sing
Y
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
doub
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
Y
107
N
sing
Y
108
N
sing
Y
109
N
doub
N
110
N
sing
Y
111
N
sing
N
112
N
sing
Y
113
N
doub
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
US
Science
SCIEAS
0038
0036-8075
270
1842
1845
8525382
Solution structure of a cisplatin-induced DNA interstrand cross-link.
1995
10.2210/pdb1ddp/pdb
pdb_00001ddp
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3044.016
DNA (5'-D(*CP*AP*TP*AP*GP*CP*TP*AP*TP*G)-3')
2
syn
polymer
CHEMICALLY SYNTHESIZED
300.045
Cisplatin
1
syn
non-polymer
DEOXYRIBONUCLEIC ACID
no
no
(DC)(DA)(DT)(DA)(DG)(DC)(DT)(DA)(DT)(DG)
CATAGCTATG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
-12.460
1
19
A
1
B
10
-1.696
A_DC1:DG10_B
1
-2.647
0.984
0.657
-0.347
-1.699
1
20
A
2
B
9
0.415
A_DA2:DT9_B
2
-8.707
-0.343
0.608
-0.186
1.136
1
20
A
3
B
8
0.464
A_DT3:DA8_B
3
-6.778
0.150
0.494
-0.082
19.716
1
20
A
4
B
7
-1.971
A_DA4:DT7_B
4
-5.088
0.256
0.596
0.007
-19.467
1
20
A
7
B
4
-1.922
A_DT7:DA4_B
5
-4.908
-0.261
0.605
0.004
-0.578
1
20
A
8
B
3
0.488
A_DA8:DT3_B
6
-6.791
-0.152
0.504
-0.084
2.458
1
20
A
9
B
2
0.941
A_DT9:DA2_B
7
-8.721
0.322
0.615
-0.181
13.179
1
19
A
10
B
1
-2.843
A_DG10:DC1_B
8
-3.222
-0.889
0.693
-0.330
2.738
40.366
A
A
1
2
-4.242
B
B
10
9
2.736
-2.925
0.016
-0.117
AA_DC1DA2:DT9DG10_BB
1
0.552
-0.800
40.261
0.106
0.029
3.162
33.101
A
A
2
3
-1.185
B
B
9
8
3.144
-0.675
0.107
-0.927
AA_DA2DT3:DA8DT9_BB
2
0.350
-0.615
33.093
-1.517
-0.131
2.573
31.465
A
A
3
4
0.357
B
B
8
7
2.589
0.194
0.415
-0.762
AA_DT3DA4:DT7DA8_BB
3
-0.801
1.478
31.455
-1.434
-0.884
2.565
31.429
A
A
7
8
0.090
B
B
4
3
2.578
0.049
-0.403
-0.773
AA_DT7DA8:DT3DA4_BB
4
0.838
-1.548
31.418
-1.434
0.867
3.163
33.135
A
A
8
9
-1.431
B
B
3
2
3.140
-0.816
-0.055
-0.947
AA_DA8DT9:DA2DT3_BB
5
-0.420
0.737
33.122
-1.528
0.027
2.723
41.125
A
A
9
10
-3.887
B
B
2
1
2.714
-2.728
-0.113
-0.198
AA_DT9DG10:DC1DA2_BB
6
-0.942
1.342
41.028
-0.035
0.077
chem_comp_atom
chem_comp_bond
database_2
entity
pdbx_database_status
pdbx_entity_src_syn
pdbx_nmr_software
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
Other
Source and taxonomy
Structure summary
1
0
1996-03-08
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_entity.details
_pdbx_database_status.process_site
_pdbx_nmr_software.name
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1995-10-26
REL
CPT
Cisplatin
CHEMICALLY SYNTHESIZED
sample
BECAUSE THE BOND LENGTH BETWEEN PT AND N7 IN THE CISPLATIN CROSS-LINK IS LONGER THAN 2.00 ANGSTROMS, THE PT-N7 BONDS MIGHT NOT APPEAR WHEN A PROGRAM READS THIS ENTRY.
10
FINAL RMS COORD. SHIFT 0.55 ANGSTROMS NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 643 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 AMBER FORCE FIELDS USED
BIOSYM TECHNOLOGIES
refinement
Discover
CPT
1
2
CPT
CPT
11
A
C
1
n
1
DC
1
A
A
2
n
2
DA
2
A
T
3
n
3
DT
3
A
A
4
n
4
DA
4
A
G
5
n
5
DG
5
A
C
6
n
6
DC
6
A
T
7
n
7
DT
7
A
A
8
n
8
DA
8
A
T
9
n
9
DT
9
A
G
10
n
10
DG
10
A
C
1
n
1
DC
1
B
A
2
n
2
DA
2
B
T
3
n
3
DT
3
B
A
4
n
4
DA
4
B
G
5
n
5
DG
5
B
C
6
n
6
DC
6
B
T
7
n
7
DT
7
B
A
8
n
8
DA
8
B
T
9
n
9
DT
9
B
G
10
n
10
DG
10
B
author_defined_assembly
2
dimeric
A
DG
5
A
N7
DG
5
1_555
A
CPT
11
C
PT1
CPT
1_555
A
CPT
11
C
N1
CPT
1_555
89.0
A
DG
5
A
N7
DG
5
1_555
A
CPT
11
C
PT1
CPT
1_555
A
CPT
11
C
N2
CPT
1_555
178.8
A
CPT
11
C
N1
CPT
1_555
A
CPT
11
C
PT1
CPT
1_555
A
CPT
11
C
N2
CPT
1_555
89.9
A
DG
5
A
N7
DG
5
1_555
A
CPT
11
C
PT1
CPT
1_555
B
DG
5
B
N7
DG
5
1_555
92.2
A
CPT
11
C
N1
CPT
1_555
A
CPT
11
C
PT1
CPT
1_555
B
DG
5
B
N7
DG
5
1_555
178.8
A
CPT
11
C
N2
CPT
1_555
A
CPT
11
C
PT1
CPT
1_555
B
DG
5
B
N7
DG
5
1_555
89.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DA
2
0.054
SIDE CHAIN
1
A
DT
3
0.063
SIDE CHAIN
1
A
DG
5
0.074
SIDE CHAIN
1
A
DA
8
0.054
SIDE CHAIN
1
B
DA
2
0.052
SIDE CHAIN
1
B
DT
3
0.063
SIDE CHAIN
1
B
DG
5
0.074
SIDE CHAIN
1
B
DA
8
0.055
SIDE CHAIN
2
A
DA
2
0.057
SIDE CHAIN
2
A
DT
3
0.065
SIDE CHAIN
2
A
DG
5
0.073
SIDE CHAIN
2
A
DA
8
0.058
SIDE CHAIN
2
B
DA
2
0.054
SIDE CHAIN
2
B
DT
3
0.066
SIDE CHAIN
2
B
DG
5
0.074
SIDE CHAIN
2
B
DA
8
0.056
SIDE CHAIN
3
A
DA
2
0.052
SIDE CHAIN
3
A
DT
3
0.062
SIDE CHAIN
3
A
DG
5
0.073
SIDE CHAIN
3
A
DA
8
0.054
SIDE CHAIN
3
B
DA
2
0.054
SIDE CHAIN
3
B
DT
3
0.063
SIDE CHAIN
3
B
DG
5
0.074
SIDE CHAIN
3
B
DA
8
0.057
SIDE CHAIN
4
A
DT
3
0.064
SIDE CHAIN
4
A
DG
5
0.071
SIDE CHAIN
4
A
DA
8
0.053
SIDE CHAIN
4
B
DA
2
0.056
SIDE CHAIN
4
B
DG
5
0.073
SIDE CHAIN
4
B
DA
8
0.056
SIDE CHAIN
5
A
DG
5
0.073
SIDE CHAIN
5
A
DG
10
0.060
SIDE CHAIN
5
B
DA
2
0.055
SIDE CHAIN
5
B
DT
3
0.064
SIDE CHAIN
5
B
DG
5
0.071
SIDE CHAIN
6
A
DT
3
0.064
SIDE CHAIN
6
A
DG
5
0.072
SIDE CHAIN
6
A
DA
8
0.060
SIDE CHAIN
6
A
DG
10
0.062
SIDE CHAIN
6
B
DA
2
0.090
SIDE CHAIN
6
B
DG
5
0.073
SIDE CHAIN
6
B
DA
8
0.056
SIDE CHAIN
7
A
DA
2
0.055
SIDE CHAIN
7
A
DT
3
0.064
SIDE CHAIN
7
A
DG
5
0.074
SIDE CHAIN
7
A
DG
10
0.060
SIDE CHAIN
7
B
DT
3
0.060
SIDE CHAIN
7
B
DG
5
0.072
SIDE CHAIN
7
B
DA
8
0.055
SIDE CHAIN
8
A
DA
2
0.054
SIDE CHAIN
8
A
DT
3
0.064
SIDE CHAIN
8
A
DG
5
0.073
SIDE CHAIN
8
A
DA
8
0.054
SIDE CHAIN
8
A
DG
10
0.059
SIDE CHAIN
8
B
DA
2
0.057
SIDE CHAIN
8
B
DT
3
0.064
SIDE CHAIN
8
B
DG
5
0.073
SIDE CHAIN
8
B
DA
8
0.055
SIDE CHAIN
9
A
DA
2
0.053
SIDE CHAIN
9
A
DT
3
0.065
SIDE CHAIN
9
A
DG
5
0.074
SIDE CHAIN
9
A
DA
8
0.055
SIDE CHAIN
9
B
DT
3
0.062
SIDE CHAIN
9
B
DG
5
0.073
SIDE CHAIN
9
B
DA
8
0.056
SIDE CHAIN
10
A
DT
3
0.063
SIDE CHAIN
10
A
DG
5
0.072
SIDE CHAIN
10
A
DA
8
0.055
SIDE CHAIN
10
B
DA
2
0.052
SIDE CHAIN
10
B
DT
3
0.064
SIDE CHAIN
10
B
DG
5
0.073
SIDE CHAIN
10
B
DA
8
0.056
SIDE CHAIN
1
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
5.89
0.30
108.30
114.19
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
3.29
0.30
108.30
111.59
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
3.60
0.30
108.30
111.90
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
1
2.73
0.30
108.30
111.03
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
1
5.91
0.30
108.30
114.21
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
2.98
0.30
108.30
111.28
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
3.31
0.30
108.30
111.61
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
2.21
0.30
108.30
110.51
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
2.03
0.30
108.30
110.33
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
3.57
0.30
108.30
111.87
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
2
2.47
0.30
108.30
110.77
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
2
5.92
0.30
108.30
114.22
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
2
2.99
0.30
108.30
111.29
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
2
3.87
0.30
108.30
112.17
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
2
2.03
0.30
108.30
110.33
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
1.95
0.30
108.30
110.25
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
2
3.48
0.30
108.30
111.78
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
2
2.48
0.30
108.30
110.78
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
2
5.95
0.30
108.30
114.25
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
2
3.11
0.30
108.30
111.41
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
2
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
2
2.16
0.30
108.30
110.46
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
2
1.95
0.30
108.30
110.25
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
2
3.54
0.30
108.30
111.84
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
3
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
3
5.87
0.30
108.30
114.17
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
3
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
3
3.83
0.30
108.30
112.13
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
3
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
3
3.57
0.30
108.30
111.87
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
3
2.74
0.30
108.30
111.04
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
3
2.54
0.30
108.30
110.84
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
3
5.95
0.30
108.30
114.25
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
3
3.05
0.30
108.30
111.35
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
3
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
3
2.11
0.30
108.30
110.41
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
3
1.89
0.30
108.30
110.19
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
3
3.28
0.30
108.30
111.58
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
4
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
4
6.08
0.30
108.30
114.38
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
4
2.96
0.30
108.30
111.26
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
4
3.39
0.30
108.30
111.69
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
4
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
1.89
0.30
108.30
110.19
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
4
3.32
0.30
108.30
111.62
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
4
2.71
0.30
108.30
111.01
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
4
1.94
0.30
108.30
110.24
B
B
B
O4'
C1'
N9
DA
DA
DA
2
2
2
N
4
5.56
0.30
108.30
113.86
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
4
5.57
0.30
108.30
113.87
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
4
2.82
0.30
108.30
111.12
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
4
3.99
0.30
108.30
112.29
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
4
2.10
0.30
108.30
110.40
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
4
2.09
0.30
108.30
110.39
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
4
3.58
0.30
108.30
111.88
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
5
2.63
0.30
108.30
110.93
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
1.99
0.30
108.30
110.29
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
5
5.69
0.30
108.30
113.99
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
5
5.54
0.30
108.30
113.84
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
5
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
5
3.37
0.30
108.30
111.67
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
5
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
5
3.71
0.30
108.30
112.01
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
5
2.71
0.30
108.30
111.01
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
5
2.51
0.30
108.30
110.81
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
5
6.03
0.30
108.30
114.33
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
5
2.97
0.30
108.30
111.27
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
5
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
5
2.06
0.30
108.30
110.36
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
5
1.97
0.30
108.30
110.27
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
5
3.23
0.30
108.30
111.53
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
6
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
6
6.06
0.30
108.30
114.36
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
6
2.88
0.30
108.30
111.18
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
6
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
6
2.18
0.30
108.30
110.48
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
6
1.83
0.30
108.30
110.13
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
6
3.63
0.30
108.30
111.93
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
6
2.66
0.30
108.30
110.96
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
6
3.33
0.30
108.30
111.63
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
6
5.60
0.30
108.30
113.90
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
6
2.88
0.30
108.30
111.18
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
6
3.43
0.30
108.30
111.73
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
6
2.24
0.30
108.30
110.54
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
6
1.97
0.30
108.30
110.27
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
6
3.59
0.30
108.30
111.89
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
7
2.75
0.30
108.30
111.05
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
7
5.92
0.30
108.30
114.22
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
7
3.09
0.30
108.30
111.39
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
7
3.35
0.30
108.30
111.65
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
7
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
7
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
7
3.71
0.30
108.30
112.01
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
7
2.86
0.30
108.30
111.16
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
7
2.66
0.30
108.30
110.96
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
7
5.99
0.30
108.30
114.29
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
7
3.03
0.30
108.30
111.33
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
7
3.61
0.30
108.30
111.91
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
7
1.97
0.30
108.30
110.27
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
7
2.08
0.30
108.30
110.38
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
7
3.54
0.30
108.30
111.84
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
8
2.68
0.30
108.30
110.98
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
8
2.57
0.30
108.30
110.87
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
8
6.03
0.30
108.30
114.33
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
8
3.08
0.30
108.30
111.38
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
8
3.35
0.30
108.30
111.65
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
8
2.17
0.30
108.30
110.47
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
1.99
0.30
108.30
110.29
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
8
3.59
0.30
108.30
111.89
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
8
4.51
0.30
108.30
112.81
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
8
2.46
0.30
108.30
110.76
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
8
5.92
0.30
108.30
114.22
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
8
2.99
0.30
108.30
111.29
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
8
3.88
0.30
108.30
112.18
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
8
2.02
0.30
108.30
110.32
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
8
2.07
0.30
108.30
110.37
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
8
3.57
0.30
108.30
111.87
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
9
4.35
0.30
108.30
112.65
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
9
5.97
0.30
108.30
114.27
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
9
3.10
0.30
108.30
111.40
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
9
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
9
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
9
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
9
3.51
0.30
108.30
111.81
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
9
2.72
0.30
108.30
111.02
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
9
2.48
0.30
108.30
110.78
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
9
5.90
0.30
108.30
114.20
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
9
2.96
0.30
108.30
111.26
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
9
3.88
0.30
108.30
112.18
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
9
1.98
0.30
108.30
110.28
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
9
2.04
0.30
108.30
110.34
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
9
3.62
0.30
108.30
111.92
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
10
4.33
0.30
108.30
112.63
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
10
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N1
DT
DT
DT
3
3
3
N
10
5.93
0.30
108.30
114.23
A
A
A
O4'
C1'
N9
DA
DA
DA
4
4
4
N
10
3.01
0.30
108.30
111.31
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
10
3.93
0.30
108.30
112.23
A
A
A
O4'
C1'
N1
DC
DC
DC
6
6
6
N
10
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N1
DT
DT
DT
7
7
7
N
10
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
10
3.55
0.30
108.30
111.85
A
A
A
O4'
C1'
N1
DT
DT
DT
9
9
9
N
10
2.68
0.30
108.30
110.98
B
B
B
O4'
C1'
N1
DC
DC
DC
1
1
1
N
10
2.48
0.30
108.30
110.78
B
B
B
O4'
C1'
N1
DT
DT
DT
3
3
3
N
10
6.00
0.30
108.30
114.30
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
10
3.03
0.30
108.30
111.33
B
B
B
O4'
C1'
N9
DG
DG
DG
5
5
5
N
10
3.30
0.30
108.30
111.60
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
10
2.11
0.30
108.30
110.41
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
10
1.84
0.30
108.30
110.14
B
B
B
O4'
C1'
N9
DA
DA
DA
8
8
8
N
10
3.43
0.30
108.30
111.73
B
B
B
O4'
C1'
N1
DT
DT
DT
9
9
9
N
refinement
AMBER
Solution structure of a CISPLATIN-INDUCED [CATAGCTATG]2 Interstrand cross-link
1
N
N
1
N
N
2
N
N
metalc
2.013
A
DG
5
A
N7
DG
5
1_555
A
CPT
11
C
PT1
CPT
1_555
metalc
2.014
A
CPT
11
C
PT1
CPT
1_555
B
DG
5
B
N7
DG
5
1_555
hydrog
DC-DT MISPAIR
A
DC
1
A
N4
DC
1
1_555
B
DT
9
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
10
B
N1
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
10
B
O6
DG
10
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
10
B
N2
DG
10
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
9
B
N3
DT
9
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
9
B
O4
DT
9
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
8
B
N1
DA
8
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
8
B
N6
DA
8
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N1
DA
4
1_555
B
DT
7
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
4
A
N6
DA
4
1_555
B
DT
7
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
4
B
N1
DA
4
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
4
B
N6
DA
4
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
3
B
N3
DT
3
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
3
B
O4
DT
3
1_555
hydrog
DT-DC MISPAIR
A
DT
9
A
O4
DT
9
1_555
B
DC
1
B
N4
DC
1
1_555
hydrog
WATSON-CRICK
A
DT
9
A
N3
DT
9
1_555
B
DA
2
B
N1
DA
2
1_555
hydrog
WATSON-CRICK
A
DT
9
A
O4
DT
9
1_555
B
DA
2
B
N6
DA
2
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N1
DG
10
1_555
B
DC
1
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
N2
DG
10
1_555
B
DC
1
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
10
A
O6
DG
10
1_555
B
DC
1
B
N4
DC
1
1_555
DNA
DNA, DOUBLE HELIX, ANTITUMOR DRUG, CIS-DDP, INTERSTRAND CROSS-LINK
1DDP
PDB
1
1DDP
1
10
1DDP
1
10
1DDP
A
1
1
10
1
10
1DDP
1
10
1DDP
B
1
1
10
BINDING SITE FOR RESIDUE CPT A 11
A
CPT
11
Software
2
A
DG
5
A
DG
5
2
1_555
B
DG
5
B
DG
5
2
1_555
1
P 1