0.020024
0.011561
0.000000
0.000000
0.023122
0.000000
0.000000
0.000000
0.012359
0.00000
0.00000
0.00000
Beneken, J.
Tu, J.C.
Xiao, B.
Worley, P.F.
Leahy, D.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90
90
120
49.94
49.94
80.91
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Neuron
NERNET
2038
0896-6273
26
143
154
10.1016/S0896-6273(00)81145-9
10798399
Structure of the Homer EVH1 domain-peptide complex reveals a new twist in polyproline recognition.
2000
US
Neuron
NERNET
2038
0896-6273
21
717
726
10.1016/S0896-6273(00)80589-9
Homer binds a novel proline-rich motif and links group 1 metabotropic glutamate receptors with IP3 receptors
1998
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93
1
93
1
93
1
93
1
IMAGE PLATE
1998-10-30
RIGAKU RAXIS IV
IMAGE PLATE
1998-10-30
RIGAKU RAXIS IV
IMAGE PLATE
1998-10-30
RIGAKU RAXIS IV
IMAGE PLATE
1998-10-30
RIGAKU RAXIS IV
MAD
M
x-ray
1
0.9879
1.0
0.9793
1.0
0.9790
1.0
0.9611
1.0
X4A
NSLS
0.9879
SYNCHROTRON
NSLS BEAMLINE X4A
X4A
NSLS
0.9793
SYNCHROTRON
NSLS BEAMLINE X4A
X4A
NSLS
0.9790
SYNCHROTRON
NSLS BEAMLINE X4A
X4A
NSLS
0.9611
SYNCHROTRON
NSLS BEAMLINE X4A
13827.220
GLGF-DOMAIN PROTEIN HOMER
HOMER EVH1 DOMAIN RESIDUES 1-120
NONE
1
man
polymer
18.015
water
88
nat
water
no
yes
(MSE)GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPN(MSE)TFTKTSQ
KFGQWADSRANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK
MGEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDSTRNVYRIISLDGSKAIINSTITPNMTFTKTSQKFGQWADS
RANTVYGLGFSSEHHLSKFAEKFQEFKEAARLAKEKSQEK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway rat
Rattus
eubacteria
sample
10116
BRAIN
Rattus norvegicus
2
Bacteria
PLASMID
PGEX
1
2.11
41.59
VAPOR DIFFUSION, HANGING DROP
7.4
PEG 3350, Magnesium sulfate, Hepes, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
repository
Initial release
Version format compliance
Version format compliance
Refinement description
1
0
2000-05-10
1
1
2008-04-27
1
2
2011-07-13
1
3
2017-10-04
CRYSTAL STRUCTURE OF THE HOMER EVH1 DOMAIN WITH BOUND MGLUR PEPTIDE
RCSB
Y
RCSB
1999-11-11
REL
REL
HOH
water
TIP
301
2
HOH
HOH
301
A
TIP
302
2
HOH
HOH
302
A
TIP
303
2
HOH
HOH
303
A
TIP
304
2
HOH
HOH
304
A
TIP
305
2
HOH
HOH
305
A
TIP
306
2
HOH
HOH
306
A
TIP
307
2
HOH
HOH
307
A
TIP
308
2
HOH
HOH
308
A
TIP
309
2
HOH
HOH
309
A
TIP
310
2
HOH
HOH
310
A
TIP
311
2
HOH
HOH
311
A
TIP
312
2
HOH
HOH
312
A
TIP
313
2
HOH
HOH
313
A
TIP
314
2
HOH
HOH
314
A
TIP
315
2
HOH
HOH
315
A
TIP
316
2
HOH
HOH
316
A
TIP
317
2
HOH
HOH
317
A
TIP
318
2
HOH
HOH
318
A
TIP
319
2
HOH
HOH
319
A
TIP
320
2
HOH
HOH
320
A
TIP
321
2
HOH
HOH
321
A
TIP
323
2
HOH
HOH
323
A
TIP
324
2
HOH
HOH
324
A
TIP
325
2
HOH
HOH
325
A
TIP
326
2
HOH
HOH
326
A
TIP
327
2
HOH
HOH
327
A
TIP
328
2
HOH
HOH
328
A
TIP
329
2
HOH
HOH
329
A
TIP
330
2
HOH
HOH
330
A
TIP
331
2
HOH
HOH
331
A
TIP
332
2
HOH
HOH
332
A
TIP
333
2
HOH
HOH
333
A
TIP
334
2
HOH
HOH
334
A
TIP
335
2
HOH
HOH
335
A
TIP
336
2
HOH
HOH
336
A
TIP
337
2
HOH
HOH
337
A
TIP
338
2
HOH
HOH
338
A
TIP
339
2
HOH
HOH
339
A
TIP
340
2
HOH
HOH
340
A
TIP
341
2
HOH
HOH
341
A
TIP
344
2
HOH
HOH
344
A
TIP
345
2
HOH
HOH
345
A
TIP
346
2
HOH
HOH
346
A
TIP
347
2
HOH
HOH
347
A
TIP
348
2
HOH
HOH
348
A
TIP
349
2
HOH
HOH
349
A
TIP
350
2
HOH
HOH
350
A
TIP
351
2
HOH
HOH
351
A
TIP
352
2
HOH
HOH
352
A
TIP
353
2
HOH
HOH
353
A
TIP
354
2
HOH
HOH
354
A
TIP
355
2
HOH
HOH
355
A
TIP
356
2
HOH
HOH
356
A
TIP
357
2
HOH
HOH
357
A
TIP
358
2
HOH
HOH
358
A
TIP
359
2
HOH
HOH
359
A
TIP
361
2
HOH
HOH
361
A
TIP
363
2
HOH
HOH
363
A
TIP
364
2
HOH
HOH
364
A
TIP
365
2
HOH
HOH
365
A
TIP
367
2
HOH
HOH
367
A
TIP
368
2
HOH
HOH
368
A
TIP
371
2
HOH
HOH
371
A
TIP
372
2
HOH
HOH
372
A
TIP
373
2
HOH
HOH
373
A
TIP
375
2
HOH
HOH
375
A
TIP
376
2
HOH
HOH
376
A
TIP
377
2
HOH
HOH
377
A
TIP
378
2
HOH
HOH
378
A
TIP
379
2
HOH
HOH
379
A
TIP
380
2
HOH
HOH
380
A
TIP
382
2
HOH
HOH
382
A
TIP
383
2
HOH
HOH
383
A
TIP
385
2
HOH
HOH
385
A
TIP
386
2
HOH
HOH
386
A
TIP
387
2
HOH
HOH
387
A
TIP
388
2
HOH
HOH
388
A
TIP
389
2
HOH
HOH
389
A
TIP
391
2
HOH
HOH
391
A
TIP
393
2
HOH
HOH
393
A
TIP
394
2
HOH
HOH
394
A
TIP
395
2
HOH
HOH
395
A
TIP
396
2
HOH
HOH
396
A
TIP
397
2
HOH
HOH
397
A
TIP
398
2
HOH
HOH
398
A
TIP
399
2
HOH
HOH
399
A
TIP
400
2
HOH
HOH
400
A
TIP
401
2
HOH
HOH
401
A
MSE
1
n
1
MSE
1
A
GLY
2
n
2
GLY
2
A
GLU
3
n
3
GLU
3
A
GLN
4
n
4
GLN
4
A
PRO
5
n
5
PRO
5
A
ILE
6
n
6
ILE
6
A
PHE
7
n
7
PHE
7
A
SER
8
n
8
SER
8
A
THR
9
n
9
THR
9
A
ARG
10
n
10
ARG
10
A
ALA
11
n
11
ALA
11
A
HIS
12
n
12
HIS
12
A
VAL
13
n
13
VAL
13
A
PHE
14
n
14
PHE
14
A
GLN
15
n
15
GLN
15
A
ILE
16
n
16
ILE
16
A
ASP
17
n
17
ASP
17
A
PRO
18
n
18
PRO
18
A
ASN
19
n
19
ASN
19
A
THR
20
n
20
THR
20
A
LYS
21
n
21
LYS
21
A
LYS
22
n
22
LYS
22
A
ASN
23
n
23
ASN
23
A
TRP
24
n
24
TRP
24
A
VAL
25
n
25
VAL
25
A
PRO
26
n
26
PRO
26
A
THR
27
n
27
THR
27
A
SER
28
n
28
SER
28
A
LYS
29
n
29
LYS
29
A
HIS
30
n
30
HIS
30
A
ALA
31
n
31
ALA
31
A
VAL
32
n
32
VAL
32
A
THR
33
n
33
THR
33
A
VAL
34
n
34
VAL
34
A
SER
35
n
35
SER
35
A
TYR
36
n
36
TYR
36
A
PHE
37
n
37
PHE
37
A
TYR
38
n
38
TYR
38
A
ASP
39
n
39
ASP
39
A
SER
40
n
40
SER
40
A
THR
41
n
41
THR
41
A
ARG
42
n
42
ARG
42
A
ASN
43
n
43
ASN
43
A
VAL
44
n
44
VAL
44
A
TYR
45
n
45
TYR
45
A
ARG
46
n
46
ARG
46
A
ILE
47
n
47
ILE
47
A
ILE
48
n
48
ILE
48
A
SER
49
n
49
SER
49
A
LEU
50
n
50
LEU
50
A
ASP
51
n
51
ASP
51
A
GLY
52
n
52
GLY
52
A
SER
53
n
53
SER
53
A
LYS
54
n
54
LYS
54
A
ALA
55
n
55
ALA
55
A
ILE
56
n
56
ILE
56
A
ILE
57
n
57
ILE
57
A
ASN
58
n
58
ASN
58
A
SER
59
n
59
SER
59
A
THR
60
n
60
THR
60
A
ILE
61
n
61
ILE
61
A
THR
62
n
62
THR
62
A
PRO
63
n
63
PRO
63
A
ASN
64
n
64
ASN
64
A
MSE
65
n
65
MSE
65
A
THR
66
n
66
THR
66
A
PHE
67
n
67
PHE
67
A
THR
68
n
68
THR
68
A
LYS
69
n
69
LYS
69
A
THR
70
n
70
THR
70
A
SER
71
n
71
SER
71
A
GLN
72
n
72
GLN
72
A
LYS
73
n
73
LYS
73
A
PHE
74
n
74
PHE
74
A
GLY
75
n
75
GLY
75
A
GLN
76
n
76
GLN
76
A
TRP
77
n
77
TRP
77
A
ALA
78
n
78
ALA
78
A
ASP
79
n
79
ASP
79
A
SER
80
n
80
SER
80
A
ARG
81
n
81
ARG
81
A
ALA
82
n
82
ALA
82
A
ASN
83
n
83
ASN
83
A
THR
84
n
84
THR
84
A
VAL
85
n
85
VAL
85
A
TYR
86
n
86
TYR
86
A
GLY
87
n
87
GLY
87
A
LEU
88
n
88
LEU
88
A
GLY
89
n
89
GLY
89
A
PHE
90
n
90
PHE
90
A
SER
91
n
91
SER
91
A
SER
92
n
92
SER
92
A
GLU
93
n
93
GLU
93
A
HIS
94
n
94
HIS
94
A
HIS
95
n
95
HIS
95
A
LEU
96
n
96
LEU
96
A
SER
97
n
97
SER
97
A
LYS
98
n
98
LYS
98
A
PHE
99
n
99
PHE
99
A
ALA
100
n
100
ALA
100
A
GLU
101
n
101
GLU
101
A
LYS
102
n
102
LYS
102
A
PHE
103
n
103
PHE
103
A
GLN
104
n
104
GLN
104
A
GLU
105
n
105
GLU
105
A
PHE
106
n
106
PHE
106
A
LYS
107
n
107
LYS
107
A
GLU
108
n
108
GLU
108
A
ALA
109
n
109
ALA
109
A
ALA
110
n
110
ALA
110
A
ARG
111
n
111
ARG
111
A
n
112
112
A
n
113
113
A
n
114
114
A
n
115
115
A
n
116
116
A
n
117
117
A
n
118
118
A
n
119
119
A
n
120
120
A
author_defined_assembly
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
1
MET
A
MSE
65
SELENOMETHIONINE
A
MSE
65
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
SER
59
A
O
SER
59
A
N
ILE
47
A
N
ILE
47
A
N
LEU
50
A
N
LEU
50
A
O
THR
33
A
O
THR
33
A
O
TYR
38
A
O
TYR
38
A
N
GLN
4
A
N
GLN
4
A
O
GLN
15
A
O
GLN
15
A
N
VAL
25
A
N
VAL
25
A
O
SER
59
A
O
SER
59
A
N
ILE
47
A
N
ILE
47
A
N
LEU
50
A
N
LEU
50
A
O
THR
33
A
O
THR
33
A
O
TYR
38
A
O
TYR
38
A
N
GLN
4
A
N
GLN
4
A
N
ILE
16
A
N
ILE
16
A
O
VAL
85
A
O
VAL
85
A
N
LEU
88
A
N
LEU
88
A
O
GLY
75
A
O
GLY
75
A
O
GLN
76
A
O
GLN
76
A
N
THR
68
A
N
THR
68
1
A
LEU
112
A
LEU
112
1
Y
1
A
ALA
113
A
ALA
113
1
Y
1
A
LYS
114
A
LYS
114
1
Y
1
A
GLU
115
A
GLU
115
1
Y
1
A
LYS
116
A
LYS
116
1
Y
1
A
SER
117
A
SER
117
1
Y
1
A
GLN
118
A
GLN
118
1
Y
1
A
GLU
119
A
GLU
119
1
Y
1
A
LYS
120
A
LYS
120
1
Y
1
A
A
O
O
HOH
HOH
394
394
2.05
1_555
6_555
1
A
ASN
58
-151.37
67.13
0.285
0.245
0.245
1.70
30.00
1313
13357
12725
RANDOM
1
0.000
0.0
ENGH AND HUBER
1.70
30.00
88
984
0
0
896
0.0126
1.745
1.7
30.0
1DDW
13342
12725
0.0
0.0
0.0870000
1
21.0
4.8
99.9
0.2860000
1.70
1.78
2.34
77.0
phasing
SOLVE
refinement
CNS
data scaling
SCALEPACK
GLGF-DOMAIN PROTEIN HOMER
HOMER EVH1 DOMAIN UNLIGANDED
1
N
N
2
N
N
A
SER
92
A
SER
92
HELX_P
A
ARG
111
A
ARG
111
1
1
20
covale
1.328
A
MSE
1
A
C
MSE
1
1_555
A
GLY
2
A
N
GLY
2
1_555
covale
1.331
A
ASN
64
A
C
ASN
64
1_555
A
MSE
65
A
N
MSE
65
1_555
covale
1.327
A
MSE
65
A
C
MSE
65
1_555
A
THR
66
A
N
THR
66
1_555
SIGNALING PROTEIN
PLECKSTRIN HOMOLOGY DOMAIN FOLD, SIGNALING PROTEIN
HOME1_RAT
UNP
1
Q9Z214
4
123
1DDW
1
120
Q9Z214
A
1
1
120
1
MET
MODIFIED RESIDUE
MSE
1
1DDW
A
Q9Z214
UNP
4
1
1
MET
MODIFIED RESIDUE
MSE
65
1DDW
A
Q9Z214
UNP
68
65
5
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LYS
54
A
LYS
54
A
THR
60
A
THR
60
A
VAL
44
A
VAL
44
A
ASP
51
A
ASP
51
A
VAL
32
A
VAL
32
A
ASP
39
A
ASP
39
A
GLU
3
A
GLU
3
A
ILE
16
A
ILE
16
A
TRP
24
A
TRP
24
A
PRO
26
A
PRO
26
A
LYS
54
A
LYS
54
A
THR
60
A
THR
60
A
VAL
44
A
VAL
44
A
ASP
51
A
ASP
51
A
VAL
32
A
VAL
32
A
ASP
39
A
ASP
39
A
GLU
3
A
GLU
3
A
ILE
16
A
ILE
16
A
THR
84
A
THR
84
A
GLY
89
A
GLY
89
A
PHE
74
A
PHE
74
A
ASP
79
A
ASP
79
A
THR
68
A
THR
68
A
LYS
69
A
LYS
69
154
P 32 2 1