1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wang, Y. Amegbey, G. Wishart, D.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE J.Biomol.Nmr JBNME9 0800 0925-2738 29 85 90 10.1023/B:JNMR.0000019506.30351.ca 15017142 Solution structures of reduced and oxidized bacteriophage T4 glutaredoxin. 2004 10.2210/pdb1de1/pdb pdb_00001de1 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 OXIDIZED 10063.631 GLUTAREDOXIN 1 nat polymer no no MFKVYGYDSNIHKCVYCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD QLREYFK MFKVYGYDSNIHKCVYCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD QLREYFK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n THIS SEQUENCE OCCURS NATURALLY IN BACTERIOPHAGE T4 T4-like viruses sample 10665 Enterobacteria phage T4 Enterobacteria phage T4 sensu lato database_2 pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations 1 0 1999-11-24 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession REDUCED BACTERIOPHAGE T4 GLUTAREDOXIN RCSB Y RCSB 1999-11-12 REL THE STRUCTURES WERE DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES BACK CALCULATED DATA AGREE WITH EXPERIMENTAL NOESY SPECTRUM,STRUCTURES WITH ACCEPTABLE COVALENT GEOMETRY,STRUCTURES WITH FAVORABLE NON-BOND ENERGY, STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE LOWEST ENERGY,TARGET FUNCTION 50 30 2D NOESY, TOCSY, DQF_COSY 0 7.0 AMBIENT 298 K THE STRUCTURES ARE BASED ON 1050 DISTANCE, 188 DIHEDRAL ANGLE AND 201 H CHEMICAL SHIFT CONSTRAINTS. SIMULATED ANNEALING MOLECULAR DYNAMICS 24 closest to the average 2MM T4 GLUTAREDOXIN; 50MM PH7.0 PHOSPHATE BUFFER VARIAN data analysis VNMR 6.1 BRUNGER, A. T. structure solution X-PLOR 3.85 BRUNGER, A. T. refinement X-PLOR 3.85 600 Varian UNITY MET 1 n 1 MET 1 A PHE 2 n 2 PHE 2 A LYS 3 n 3 LYS 3 A VAL 4 n 4 VAL 4 A TYR 5 n 5 TYR 5 A GLY 6 n 6 GLY 6 A TYR 7 n 7 TYR 7 A ASP 8 n 8 ASP 8 A SER 9 n 9 SER 9 A ASN 10 n 10 ASN 10 A ILE 11 n 11 ILE 11 A HIS 12 n 12 HIS 12 A LYS 13 n 13 LYS 13 A CYS 14 n 14 CYS 14 A VAL 15 n 15 VAL 15 A TYR 16 n 16 TYR 16 A CYS 17 n 17 CYS 17 A ASP 18 n 18 ASP 18 A ASN 19 n 19 ASN 19 A ALA 20 n 20 ALA 20 A LYS 21 n 21 LYS 21 A ARG 22 n 22 ARG 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A THR 25 n 25 THR 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A LYS 28 n 28 LYS 28 A GLN 29 n 29 GLN 29 A PRO 30 n 30 PRO 30 A PHE 31 n 31 PHE 31 A GLU 32 n 32 GLU 32 A PHE 33 n 33 PHE 33 A ILE 34 n 34 ILE 34 A ASN 35 n 35 ASN 35 A ILE 36 n 36 ILE 36 A MET 37 n 37 MET 37 A PRO 38 n 38 PRO 38 A GLU 39 n 39 GLU 39 A LYS 40 n 40 LYS 40 A GLY 41 n 41 GLY 41 A VAL 42 n 42 VAL 42 A PHE 43 n 43 PHE 43 A ASP 44 n 44 ASP 44 A ASP 45 n 45 ASP 45 A GLU 46 n 46 GLU 46 A LYS 47 n 47 LYS 47 A ILE 48 n 48 ILE 48 A ALA 49 n 49 ALA 49 A GLU 50 n 50 GLU 50 A LEU 51 n 51 LEU 51 A LEU 52 n 52 LEU 52 A THR 53 n 53 THR 53 A LYS 54 n 54 LYS 54 A LEU 55 n 55 LEU 55 A GLY 56 n 56 GLY 56 A ARG 57 n 57 ARG 57 A ASP 58 n 58 ASP 58 A THR 59 n 59 THR 59 A GLN 60 n 60 GLN 60 A ILE 61 n 61 ILE 61 A GLY 62 n 62 GLY 62 A LEU 63 n 63 LEU 63 A THR 64 n 64 THR 64 A MET 65 n 65 MET 65 A PRO 66 n 66 PRO 66 A GLN 67 n 67 GLN 67 A VAL 68 n 68 VAL 68 A PHE 69 n 69 PHE 69 A ALA 70 n 70 ALA 70 A PRO 71 n 71 PRO 71 A ASP 72 n 72 ASP 72 A GLY 73 n 73 GLY 73 A SER 74 n 74 SER 74 A HIS 75 n 75 HIS 75 A ILE 76 n 76 ILE 76 A GLY 77 n 77 GLY 77 A GLY 78 n 78 GLY 78 A PHE 79 n 79 PHE 79 A ASP 80 n 80 ASP 80 A GLN 81 n 81 GLN 81 A LEU 82 n 82 LEU 82 A ARG 83 n 83 ARG 83 A GLU 84 n 84 GLU 84 A TYR 85 n 85 TYR 85 A PHE 86 n 86 PHE 86 A LYS 87 n 87 LYS 87 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLU 32 A N GLU 32 A O PHE 2 A O PHE 2 A O TYR 5 A O TYR 5 A N GLN 67 A N GLN 67 A N ALA 70 A N ALA 70 A O SER 74 A O SER 74 1 A A O H ILE ASP 36 44 1.57 2 A A O H ALA ASP 70 72 1.55 7 A A O H ILE ASP 36 44 1.59 18 A A O H ILE ASP 36 44 1.53 23 A A O H ALA ASP 70 72 1.52 23 A A H O TYR GLN 5 67 1.60 27 A A O H ILE ASP 36 44 1.56 29 A A O H ILE ASP 36 44 1.58 1 A ASP 8 -107.80 -65.76 1 A SER 9 168.79 -32.53 1 A CYS 14 -179.37 115.36 1 A LYS 28 71.67 65.05 1 A ARG 57 -150.64 28.07 1 A ASP 58 -121.70 -156.63 1 A PHE 79 -79.66 -70.08 2 A SER 9 83.81 -13.76 2 A CYS 14 -179.26 88.93 2 A LYS 28 70.34 54.07 2 A PRO 71 -63.74 58.85 2 A ASP 72 90.49 29.74 2 A PHE 79 -70.79 -70.55 2 A PHE 86 -87.87 -70.18 3 A CYS 14 -178.68 108.09 3 A PHE 86 -96.17 -70.74 4 A ASP 8 -94.41 -76.21 4 A SER 9 174.53 -34.50 4 A LYS 28 74.16 42.48 4 A ARG 57 -95.51 35.33 4 A ASP 58 -120.88 -147.21 4 A GLN 60 -69.19 98.21 4 A SER 74 179.92 152.76 4 A PHE 79 -71.56 -70.66 5 A ASP 8 -72.15 -81.08 5 A SER 9 174.12 -41.91 5 A CYS 14 -174.66 73.82 5 A LYS 28 69.40 62.28 5 A ARG 57 -150.53 30.87 5 A ASP 58 -121.00 -151.34 5 A PHE 86 -90.65 -69.80 6 A SER 9 166.73 -33.15 6 A CYS 14 -172.14 108.32 6 A PHE 43 -59.40 170.29 6 A SER 74 -167.64 113.08 6 A PHE 86 -87.64 -70.38 7 A CYS 14 -175.61 123.78 7 A LYS 28 67.08 61.14 7 A ARG 57 -93.90 31.35 7 A ASP 58 -121.15 -153.46 7 A PHE 86 -87.97 -70.34 8 A CYS 14 -167.92 113.70 8 A LYS 28 68.39 60.99 8 A PHE 79 -71.28 -70.03 8 A PHE 86 -95.62 -70.37 9 A CYS 14 -175.04 119.00 9 A LYS 40 -58.79 -8.00 9 A ARG 57 -125.25 -167.60 9 A PHE 79 -74.36 -70.20 10 A CYS 14 -175.95 111.65 10 A MET 37 -160.73 73.40 10 A PHE 43 -59.74 170.45 10 A ARG 57 -150.33 31.03 10 A ASP 58 -121.07 -143.72 10 A ASP 72 -163.23 39.79 11 A ASP 8 -70.58 -74.38 11 A SER 9 173.62 -36.69 11 A CYS 14 177.43 113.15 11 A LYS 28 71.65 63.52 11 A ARG 57 -150.34 33.64 11 A ASP 58 -120.92 -146.88 11 A GLN 60 -67.28 98.61 11 A PHE 79 -72.05 -70.76 12 A ASP 8 -83.47 -73.00 12 A SER 9 171.79 -38.75 12 A CYS 14 -165.97 87.35 12 A LYS 28 73.81 63.75 12 A ASP 72 -140.38 29.35 12 A HIS 75 -49.95 109.18 13 A SER 9 166.36 -39.35 13 A CYS 14 -175.15 65.59 13 A LYS 28 76.37 45.52 13 A ARG 57 -149.68 28.65 13 A ASP 58 -121.30 -147.14 13 A SER 74 176.67 155.67 13 A PHE 79 -67.71 -70.87 13 A PHE 86 -87.98 -70.46 14 A ASP 8 -84.07 -79.56 14 A SER 9 175.42 -34.55 14 A CYS 14 175.11 113.60 14 A LYS 28 72.59 38.43 14 A MET 37 -173.21 89.49 14 A LYS 40 -57.08 -9.07 14 A PHE 43 -58.77 170.97 14 A ASP 72 -161.30 38.97 14 A PHE 79 -75.49 -70.11 14 A PHE 86 -87.32 -70.32 15 A ASP 8 -98.94 -71.74 15 A SER 9 169.59 -32.14 15 A CYS 14 -172.32 93.53 15 A ARG 57 -150.48 33.10 15 A ASP 58 -120.85 -148.05 15 A PHE 79 -76.29 -70.19 16 A PHE 2 -39.71 120.90 16 A ASP 8 -74.88 -77.24 16 A SER 9 170.07 -32.63 16 A CYS 14 -164.99 87.56 16 A LYS 28 72.31 52.65 16 A PRO 30 -49.53 178.27 16 A PRO 71 -31.90 -37.78 16 A ASP 72 -170.29 34.03 17 A SER 9 81.09 -10.94 17 A CYS 14 -174.29 122.12 17 A LYS 28 71.24 57.91 17 A LEU 55 -67.66 -70.05 17 A ILE 61 -62.88 81.45 17 A ASP 72 -164.79 37.05 17 A PHE 79 -71.80 -70.67 18 A SER 9 177.88 -179.01 18 A CYS 14 176.67 73.03 18 A LYS 28 72.86 43.93 18 A PHE 43 -59.85 170.32 18 A ARG 57 -150.38 27.11 18 A ASP 58 -121.77 -144.85 18 A LEU 63 -48.27 166.79 18 A PRO 71 -68.09 59.44 18 A ASP 72 100.37 25.06 18 A PHE 79 -72.33 -70.57 19 A ASP 8 -64.55 -75.27 19 A SER 9 167.07 -32.87 19 A CYS 14 -176.60 82.23 19 A LYS 28 72.65 50.80 19 A PRO 38 -88.44 31.08 19 A LYS 40 -53.65 -8.57 19 A ARG 57 -150.62 27.60 19 A ASP 58 -121.59 -156.71 19 A PHE 79 -70.89 -70.66 19 A PHE 86 -88.96 -70.24 20 A ASP 8 -108.87 55.95 20 A HIS 12 -175.72 118.09 20 A CYS 14 -176.58 107.79 20 A LYS 28 76.11 49.85 20 A LYS 40 -59.33 -9.06 20 A ARG 57 -150.23 31.24 20 A ASP 58 -121.00 -142.27 20 A GLN 60 -69.57 98.35 20 A SER 74 -179.75 117.71 21 A SER 9 84.80 -14.11 21 A CYS 14 -176.91 71.36 21 A LYS 28 70.59 52.33 21 A PRO 38 -87.82 34.20 21 A ARG 57 -150.45 26.56 21 A ASP 58 -121.62 -150.78 21 A ASP 72 -160.95 39.77 22 A ASP 8 -117.52 69.32 22 A SER 9 177.87 -172.00 22 A PHE 43 -57.94 170.09 22 A ARG 57 -150.64 30.92 22 A ASP 58 -121.04 -145.75 22 A ALA 70 -49.67 150.15 22 A PHE 86 -89.91 -70.48 23 A PHE 2 -39.56 116.99 23 A SER 9 164.09 -31.41 23 A LYS 13 -48.55 156.58 23 A CYS 14 -174.27 62.66 23 A PRO 30 -44.91 171.42 23 A ARG 57 -141.35 27.90 23 A ASP 58 -121.50 -147.23 23 A GLN 60 -69.95 98.01 23 A ALA 70 -48.16 164.04 23 A PRO 71 -62.88 58.93 23 A ASP 72 86.61 29.96 23 A PHE 79 -72.53 -70.57 23 A PHE 86 -90.52 -66.89 24 A CYS 14 -175.78 96.11 24 A LYS 28 73.54 56.36 24 A ARG 57 -150.72 31.54 24 A ASP 58 -120.98 -149.96 24 A ALA 70 -48.38 152.28 24 A SER 74 -179.61 143.50 24 A PHE 86 -90.02 -70.15 25 A SER 9 73.18 -1.81 25 A CYS 14 177.73 125.65 25 A LYS 28 70.87 36.99 25 A ASP 72 -160.24 40.08 25 A PHE 79 -70.39 -70.76 25 A PHE 86 -86.11 -70.34 26 A ASP 8 -93.66 -65.47 26 A SER 9 162.28 -37.71 26 A CYS 14 -162.50 119.11 26 A PHE 86 -99.66 -70.85 27 A ASP 8 -66.95 -74.74 27 A SER 9 175.29 -34.34 27 A CYS 14 -167.49 75.67 27 A ARG 57 -150.53 30.56 27 A ASP 58 -121.04 -148.33 27 A GLN 60 -69.69 98.82 27 A ASP 72 -164.26 35.16 27 A HIS 75 -50.04 101.78 27 A PHE 79 -70.12 -70.81 27 A PHE 86 -88.00 -70.16 28 A ASP 8 -78.49 -77.90 28 A SER 9 170.78 -37.88 28 A CYS 14 -174.63 103.85 28 A ILE 61 -68.17 80.05 28 A PRO 71 -34.94 -36.88 28 A ASP 72 -166.60 31.02 28 A SER 74 73.36 179.93 28 A PHE 79 -70.65 -70.60 28 A PHE 86 -95.13 -70.19 29 A CYS 14 179.19 116.90 29 A LYS 28 70.27 57.71 29 A ARG 57 -108.58 -164.24 29 A SER 74 -164.50 119.13 29 A PHE 86 -86.34 -70.36 30 A PHE 2 -39.53 123.75 30 A LYS 13 -46.55 156.94 30 A CYS 14 -153.64 69.28 30 A PRO 30 -49.96 179.54 30 A ARG 57 -146.99 30.27 30 A ASP 58 -121.18 -146.29 30 A PHE 79 -70.63 -70.67 30 A PHE 86 -86.76 -70.24 NMR STRUCTURES OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN 1 N N A VAL 15 A VAL 15 HELX_P A LYS 28 A LYS 28 1 1 14 A ASP 44 A ASP 44 HELX_P A GLY 56 A GLY 56 1 2 13 A GLY 78 A GLY 78 HELX_P A LYS 87 A LYS 87 1 3 10 disulf 2.031 A CYS 14 A SG CYS 14 1_555 A CYS 17 A SG CYS 17 1_555 ELECTRON TRANSPORT GLUTAREDOXIN, ELECTRON TRANSPORT A MET 65 A MET 65 1 A PRO 66 A PRO 66 0.53 A MET 65 A MET 65 2 A PRO 66 A PRO 66 0.39 A MET 65 A MET 65 3 A PRO 66 A PRO 66 0.60 A MET 65 A MET 65 4 A PRO 66 A PRO 66 0.31 A MET 65 A MET 65 5 A PRO 66 A PRO 66 0.25 A MET 65 A MET 65 6 A PRO 66 A PRO 66 0.31 A MET 65 A MET 65 7 A PRO 66 A PRO 66 0.39 A MET 65 A MET 65 8 A PRO 66 A PRO 66 0.37 A MET 65 A MET 65 9 A PRO 66 A PRO 66 0.26 A MET 65 A MET 65 10 A PRO 66 A PRO 66 0.51 A MET 65 A MET 65 11 A PRO 66 A PRO 66 0.56 A MET 65 A MET 65 12 A PRO 66 A PRO 66 0.31 A MET 65 A MET 65 13 A PRO 66 A PRO 66 0.56 A MET 65 A MET 65 14 A PRO 66 A PRO 66 0.41 A MET 65 A MET 65 15 A PRO 66 A PRO 66 0.67 A MET 65 A MET 65 16 A PRO 66 A PRO 66 0.42 A MET 65 A MET 65 17 A PRO 66 A PRO 66 0.46 A MET 65 A MET 65 18 A PRO 66 A PRO 66 0.29 A MET 65 A MET 65 19 A PRO 66 A PRO 66 0.50 A MET 65 A MET 65 20 A PRO 66 A PRO 66 0.34 A MET 65 A MET 65 21 A PRO 66 A PRO 66 0.29 A MET 65 A MET 65 22 A PRO 66 A PRO 66 0.18 A MET 65 A MET 65 23 A PRO 66 A PRO 66 0.20 A MET 65 A MET 65 24 A PRO 66 A PRO 66 0.56 A MET 65 A MET 65 25 A PRO 66 A PRO 66 0.32 A MET 65 A MET 65 26 A PRO 66 A PRO 66 0.51 A MET 65 A MET 65 27 A PRO 66 A PRO 66 0.61 A MET 65 A MET 65 28 A PRO 66 A PRO 66 0.40 A MET 65 A MET 65 29 A PRO 66 A PRO 66 0.26 A MET 65 A MET 65 30 A PRO 66 A PRO 66 0.52 GLRX_BPT4 UNP 1 P00276 1 87 1DE1 1 87 P00276 A 1 1 87 4 parallel anti-parallel anti-parallel A PHE 31 A PHE 31 A ASN 35 A ASN 35 A PHE 2 A PHE 2 A GLY 6 A GLY 6 A GLN 67 A GLN 67 A ALA 70 A ALA 70 A SER 74 A SER 74 A GLY 77 A GLY 77 1 P 1