1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wang, Y.
Amegbey, G.
Wishart, D.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J.Biomol.Nmr
JBNME9
0800
0925-2738
29
85
90
10.1023/B:JNMR.0000019506.30351.ca
15017142
Solution structures of reduced and oxidized bacteriophage T4 glutaredoxin.
2004
10.2210/pdb1de1/pdb
pdb_00001de1
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
OXIDIZED
10063.631
GLUTAREDOXIN
1
nat
polymer
no
no
MFKVYGYDSNIHKCVYCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD
QLREYFK
MFKVYGYDSNIHKCVYCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD
QLREYFK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
THIS SEQUENCE OCCURS NATURALLY IN BACTERIOPHAGE T4
T4-like viruses
sample
10665
Enterobacteria phage T4
Enterobacteria phage T4 sensu lato
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1999-11-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
REDUCED BACTERIOPHAGE T4 GLUTAREDOXIN
RCSB
Y
RCSB
1999-11-12
REL
THE STRUCTURES WERE DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES
BACK CALCULATED DATA AGREE WITH EXPERIMENTAL NOESY SPECTRUM,STRUCTURES WITH
ACCEPTABLE COVALENT GEOMETRY,STRUCTURES WITH FAVORABLE NON-BOND ENERGY,
STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE LOWEST
ENERGY,TARGET FUNCTION
50
30
2D NOESY, TOCSY, DQF_COSY
0
7.0
AMBIENT
298
K
THE STRUCTURES ARE BASED ON 1050 DISTANCE, 188 DIHEDRAL ANGLE AND 201 H
CHEMICAL SHIFT CONSTRAINTS.
SIMULATED ANNEALING MOLECULAR DYNAMICS
24
closest to the average
2MM T4 GLUTAREDOXIN; 50MM PH7.0 PHOSPHATE BUFFER
VARIAN
data analysis
VNMR
6.1
BRUNGER, A. T.
structure solution
X-PLOR
3.85
BRUNGER, A. T.
refinement
X-PLOR
3.85
600
Varian
UNITY
MET
1
n
1
MET
1
A
PHE
2
n
2
PHE
2
A
LYS
3
n
3
LYS
3
A
VAL
4
n
4
VAL
4
A
TYR
5
n
5
TYR
5
A
GLY
6
n
6
GLY
6
A
TYR
7
n
7
TYR
7
A
ASP
8
n
8
ASP
8
A
SER
9
n
9
SER
9
A
ASN
10
n
10
ASN
10
A
ILE
11
n
11
ILE
11
A
HIS
12
n
12
HIS
12
A
LYS
13
n
13
LYS
13
A
CYS
14
n
14
CYS
14
A
VAL
15
n
15
VAL
15
A
TYR
16
n
16
TYR
16
A
CYS
17
n
17
CYS
17
A
ASP
18
n
18
ASP
18
A
ASN
19
n
19
ASN
19
A
ALA
20
n
20
ALA
20
A
LYS
21
n
21
LYS
21
A
ARG
22
n
22
ARG
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
THR
25
n
25
THR
25
A
VAL
26
n
26
VAL
26
A
LYS
27
n
27
LYS
27
A
LYS
28
n
28
LYS
28
A
GLN
29
n
29
GLN
29
A
PRO
30
n
30
PRO
30
A
PHE
31
n
31
PHE
31
A
GLU
32
n
32
GLU
32
A
PHE
33
n
33
PHE
33
A
ILE
34
n
34
ILE
34
A
ASN
35
n
35
ASN
35
A
ILE
36
n
36
ILE
36
A
MET
37
n
37
MET
37
A
PRO
38
n
38
PRO
38
A
GLU
39
n
39
GLU
39
A
LYS
40
n
40
LYS
40
A
GLY
41
n
41
GLY
41
A
VAL
42
n
42
VAL
42
A
PHE
43
n
43
PHE
43
A
ASP
44
n
44
ASP
44
A
ASP
45
n
45
ASP
45
A
GLU
46
n
46
GLU
46
A
LYS
47
n
47
LYS
47
A
ILE
48
n
48
ILE
48
A
ALA
49
n
49
ALA
49
A
GLU
50
n
50
GLU
50
A
LEU
51
n
51
LEU
51
A
LEU
52
n
52
LEU
52
A
THR
53
n
53
THR
53
A
LYS
54
n
54
LYS
54
A
LEU
55
n
55
LEU
55
A
GLY
56
n
56
GLY
56
A
ARG
57
n
57
ARG
57
A
ASP
58
n
58
ASP
58
A
THR
59
n
59
THR
59
A
GLN
60
n
60
GLN
60
A
ILE
61
n
61
ILE
61
A
GLY
62
n
62
GLY
62
A
LEU
63
n
63
LEU
63
A
THR
64
n
64
THR
64
A
MET
65
n
65
MET
65
A
PRO
66
n
66
PRO
66
A
GLN
67
n
67
GLN
67
A
VAL
68
n
68
VAL
68
A
PHE
69
n
69
PHE
69
A
ALA
70
n
70
ALA
70
A
PRO
71
n
71
PRO
71
A
ASP
72
n
72
ASP
72
A
GLY
73
n
73
GLY
73
A
SER
74
n
74
SER
74
A
HIS
75
n
75
HIS
75
A
ILE
76
n
76
ILE
76
A
GLY
77
n
77
GLY
77
A
GLY
78
n
78
GLY
78
A
PHE
79
n
79
PHE
79
A
ASP
80
n
80
ASP
80
A
GLN
81
n
81
GLN
81
A
LEU
82
n
82
LEU
82
A
ARG
83
n
83
ARG
83
A
GLU
84
n
84
GLU
84
A
TYR
85
n
85
TYR
85
A
PHE
86
n
86
PHE
86
A
LYS
87
n
87
LYS
87
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLU
32
A
N
GLU
32
A
O
PHE
2
A
O
PHE
2
A
O
TYR
5
A
O
TYR
5
A
N
GLN
67
A
N
GLN
67
A
N
ALA
70
A
N
ALA
70
A
O
SER
74
A
O
SER
74
1
A
A
O
H
ILE
ASP
36
44
1.57
2
A
A
O
H
ALA
ASP
70
72
1.55
7
A
A
O
H
ILE
ASP
36
44
1.59
18
A
A
O
H
ILE
ASP
36
44
1.53
23
A
A
O
H
ALA
ASP
70
72
1.52
23
A
A
H
O
TYR
GLN
5
67
1.60
27
A
A
O
H
ILE
ASP
36
44
1.56
29
A
A
O
H
ILE
ASP
36
44
1.58
1
A
ASP
8
-107.80
-65.76
1
A
SER
9
168.79
-32.53
1
A
CYS
14
-179.37
115.36
1
A
LYS
28
71.67
65.05
1
A
ARG
57
-150.64
28.07
1
A
ASP
58
-121.70
-156.63
1
A
PHE
79
-79.66
-70.08
2
A
SER
9
83.81
-13.76
2
A
CYS
14
-179.26
88.93
2
A
LYS
28
70.34
54.07
2
A
PRO
71
-63.74
58.85
2
A
ASP
72
90.49
29.74
2
A
PHE
79
-70.79
-70.55
2
A
PHE
86
-87.87
-70.18
3
A
CYS
14
-178.68
108.09
3
A
PHE
86
-96.17
-70.74
4
A
ASP
8
-94.41
-76.21
4
A
SER
9
174.53
-34.50
4
A
LYS
28
74.16
42.48
4
A
ARG
57
-95.51
35.33
4
A
ASP
58
-120.88
-147.21
4
A
GLN
60
-69.19
98.21
4
A
SER
74
179.92
152.76
4
A
PHE
79
-71.56
-70.66
5
A
ASP
8
-72.15
-81.08
5
A
SER
9
174.12
-41.91
5
A
CYS
14
-174.66
73.82
5
A
LYS
28
69.40
62.28
5
A
ARG
57
-150.53
30.87
5
A
ASP
58
-121.00
-151.34
5
A
PHE
86
-90.65
-69.80
6
A
SER
9
166.73
-33.15
6
A
CYS
14
-172.14
108.32
6
A
PHE
43
-59.40
170.29
6
A
SER
74
-167.64
113.08
6
A
PHE
86
-87.64
-70.38
7
A
CYS
14
-175.61
123.78
7
A
LYS
28
67.08
61.14
7
A
ARG
57
-93.90
31.35
7
A
ASP
58
-121.15
-153.46
7
A
PHE
86
-87.97
-70.34
8
A
CYS
14
-167.92
113.70
8
A
LYS
28
68.39
60.99
8
A
PHE
79
-71.28
-70.03
8
A
PHE
86
-95.62
-70.37
9
A
CYS
14
-175.04
119.00
9
A
LYS
40
-58.79
-8.00
9
A
ARG
57
-125.25
-167.60
9
A
PHE
79
-74.36
-70.20
10
A
CYS
14
-175.95
111.65
10
A
MET
37
-160.73
73.40
10
A
PHE
43
-59.74
170.45
10
A
ARG
57
-150.33
31.03
10
A
ASP
58
-121.07
-143.72
10
A
ASP
72
-163.23
39.79
11
A
ASP
8
-70.58
-74.38
11
A
SER
9
173.62
-36.69
11
A
CYS
14
177.43
113.15
11
A
LYS
28
71.65
63.52
11
A
ARG
57
-150.34
33.64
11
A
ASP
58
-120.92
-146.88
11
A
GLN
60
-67.28
98.61
11
A
PHE
79
-72.05
-70.76
12
A
ASP
8
-83.47
-73.00
12
A
SER
9
171.79
-38.75
12
A
CYS
14
-165.97
87.35
12
A
LYS
28
73.81
63.75
12
A
ASP
72
-140.38
29.35
12
A
HIS
75
-49.95
109.18
13
A
SER
9
166.36
-39.35
13
A
CYS
14
-175.15
65.59
13
A
LYS
28
76.37
45.52
13
A
ARG
57
-149.68
28.65
13
A
ASP
58
-121.30
-147.14
13
A
SER
74
176.67
155.67
13
A
PHE
79
-67.71
-70.87
13
A
PHE
86
-87.98
-70.46
14
A
ASP
8
-84.07
-79.56
14
A
SER
9
175.42
-34.55
14
A
CYS
14
175.11
113.60
14
A
LYS
28
72.59
38.43
14
A
MET
37
-173.21
89.49
14
A
LYS
40
-57.08
-9.07
14
A
PHE
43
-58.77
170.97
14
A
ASP
72
-161.30
38.97
14
A
PHE
79
-75.49
-70.11
14
A
PHE
86
-87.32
-70.32
15
A
ASP
8
-98.94
-71.74
15
A
SER
9
169.59
-32.14
15
A
CYS
14
-172.32
93.53
15
A
ARG
57
-150.48
33.10
15
A
ASP
58
-120.85
-148.05
15
A
PHE
79
-76.29
-70.19
16
A
PHE
2
-39.71
120.90
16
A
ASP
8
-74.88
-77.24
16
A
SER
9
170.07
-32.63
16
A
CYS
14
-164.99
87.56
16
A
LYS
28
72.31
52.65
16
A
PRO
30
-49.53
178.27
16
A
PRO
71
-31.90
-37.78
16
A
ASP
72
-170.29
34.03
17
A
SER
9
81.09
-10.94
17
A
CYS
14
-174.29
122.12
17
A
LYS
28
71.24
57.91
17
A
LEU
55
-67.66
-70.05
17
A
ILE
61
-62.88
81.45
17
A
ASP
72
-164.79
37.05
17
A
PHE
79
-71.80
-70.67
18
A
SER
9
177.88
-179.01
18
A
CYS
14
176.67
73.03
18
A
LYS
28
72.86
43.93
18
A
PHE
43
-59.85
170.32
18
A
ARG
57
-150.38
27.11
18
A
ASP
58
-121.77
-144.85
18
A
LEU
63
-48.27
166.79
18
A
PRO
71
-68.09
59.44
18
A
ASP
72
100.37
25.06
18
A
PHE
79
-72.33
-70.57
19
A
ASP
8
-64.55
-75.27
19
A
SER
9
167.07
-32.87
19
A
CYS
14
-176.60
82.23
19
A
LYS
28
72.65
50.80
19
A
PRO
38
-88.44
31.08
19
A
LYS
40
-53.65
-8.57
19
A
ARG
57
-150.62
27.60
19
A
ASP
58
-121.59
-156.71
19
A
PHE
79
-70.89
-70.66
19
A
PHE
86
-88.96
-70.24
20
A
ASP
8
-108.87
55.95
20
A
HIS
12
-175.72
118.09
20
A
CYS
14
-176.58
107.79
20
A
LYS
28
76.11
49.85
20
A
LYS
40
-59.33
-9.06
20
A
ARG
57
-150.23
31.24
20
A
ASP
58
-121.00
-142.27
20
A
GLN
60
-69.57
98.35
20
A
SER
74
-179.75
117.71
21
A
SER
9
84.80
-14.11
21
A
CYS
14
-176.91
71.36
21
A
LYS
28
70.59
52.33
21
A
PRO
38
-87.82
34.20
21
A
ARG
57
-150.45
26.56
21
A
ASP
58
-121.62
-150.78
21
A
ASP
72
-160.95
39.77
22
A
ASP
8
-117.52
69.32
22
A
SER
9
177.87
-172.00
22
A
PHE
43
-57.94
170.09
22
A
ARG
57
-150.64
30.92
22
A
ASP
58
-121.04
-145.75
22
A
ALA
70
-49.67
150.15
22
A
PHE
86
-89.91
-70.48
23
A
PHE
2
-39.56
116.99
23
A
SER
9
164.09
-31.41
23
A
LYS
13
-48.55
156.58
23
A
CYS
14
-174.27
62.66
23
A
PRO
30
-44.91
171.42
23
A
ARG
57
-141.35
27.90
23
A
ASP
58
-121.50
-147.23
23
A
GLN
60
-69.95
98.01
23
A
ALA
70
-48.16
164.04
23
A
PRO
71
-62.88
58.93
23
A
ASP
72
86.61
29.96
23
A
PHE
79
-72.53
-70.57
23
A
PHE
86
-90.52
-66.89
24
A
CYS
14
-175.78
96.11
24
A
LYS
28
73.54
56.36
24
A
ARG
57
-150.72
31.54
24
A
ASP
58
-120.98
-149.96
24
A
ALA
70
-48.38
152.28
24
A
SER
74
-179.61
143.50
24
A
PHE
86
-90.02
-70.15
25
A
SER
9
73.18
-1.81
25
A
CYS
14
177.73
125.65
25
A
LYS
28
70.87
36.99
25
A
ASP
72
-160.24
40.08
25
A
PHE
79
-70.39
-70.76
25
A
PHE
86
-86.11
-70.34
26
A
ASP
8
-93.66
-65.47
26
A
SER
9
162.28
-37.71
26
A
CYS
14
-162.50
119.11
26
A
PHE
86
-99.66
-70.85
27
A
ASP
8
-66.95
-74.74
27
A
SER
9
175.29
-34.34
27
A
CYS
14
-167.49
75.67
27
A
ARG
57
-150.53
30.56
27
A
ASP
58
-121.04
-148.33
27
A
GLN
60
-69.69
98.82
27
A
ASP
72
-164.26
35.16
27
A
HIS
75
-50.04
101.78
27
A
PHE
79
-70.12
-70.81
27
A
PHE
86
-88.00
-70.16
28
A
ASP
8
-78.49
-77.90
28
A
SER
9
170.78
-37.88
28
A
CYS
14
-174.63
103.85
28
A
ILE
61
-68.17
80.05
28
A
PRO
71
-34.94
-36.88
28
A
ASP
72
-166.60
31.02
28
A
SER
74
73.36
179.93
28
A
PHE
79
-70.65
-70.60
28
A
PHE
86
-95.13
-70.19
29
A
CYS
14
179.19
116.90
29
A
LYS
28
70.27
57.71
29
A
ARG
57
-108.58
-164.24
29
A
SER
74
-164.50
119.13
29
A
PHE
86
-86.34
-70.36
30
A
PHE
2
-39.53
123.75
30
A
LYS
13
-46.55
156.94
30
A
CYS
14
-153.64
69.28
30
A
PRO
30
-49.96
179.54
30
A
ARG
57
-146.99
30.27
30
A
ASP
58
-121.18
-146.29
30
A
PHE
79
-70.63
-70.67
30
A
PHE
86
-86.76
-70.24
NMR STRUCTURES OF OXIDIZED BACTERIOPHAGE T4 GLUTAREDOXIN
1
N
N
A
VAL
15
A
VAL
15
HELX_P
A
LYS
28
A
LYS
28
1
1
14
A
ASP
44
A
ASP
44
HELX_P
A
GLY
56
A
GLY
56
1
2
13
A
GLY
78
A
GLY
78
HELX_P
A
LYS
87
A
LYS
87
1
3
10
disulf
2.031
A
CYS
14
A
SG
CYS
14
1_555
A
CYS
17
A
SG
CYS
17
1_555
ELECTRON TRANSPORT
GLUTAREDOXIN, ELECTRON TRANSPORT
A
MET
65
A
MET
65
1
A
PRO
66
A
PRO
66
0.53
A
MET
65
A
MET
65
2
A
PRO
66
A
PRO
66
0.39
A
MET
65
A
MET
65
3
A
PRO
66
A
PRO
66
0.60
A
MET
65
A
MET
65
4
A
PRO
66
A
PRO
66
0.31
A
MET
65
A
MET
65
5
A
PRO
66
A
PRO
66
0.25
A
MET
65
A
MET
65
6
A
PRO
66
A
PRO
66
0.31
A
MET
65
A
MET
65
7
A
PRO
66
A
PRO
66
0.39
A
MET
65
A
MET
65
8
A
PRO
66
A
PRO
66
0.37
A
MET
65
A
MET
65
9
A
PRO
66
A
PRO
66
0.26
A
MET
65
A
MET
65
10
A
PRO
66
A
PRO
66
0.51
A
MET
65
A
MET
65
11
A
PRO
66
A
PRO
66
0.56
A
MET
65
A
MET
65
12
A
PRO
66
A
PRO
66
0.31
A
MET
65
A
MET
65
13
A
PRO
66
A
PRO
66
0.56
A
MET
65
A
MET
65
14
A
PRO
66
A
PRO
66
0.41
A
MET
65
A
MET
65
15
A
PRO
66
A
PRO
66
0.67
A
MET
65
A
MET
65
16
A
PRO
66
A
PRO
66
0.42
A
MET
65
A
MET
65
17
A
PRO
66
A
PRO
66
0.46
A
MET
65
A
MET
65
18
A
PRO
66
A
PRO
66
0.29
A
MET
65
A
MET
65
19
A
PRO
66
A
PRO
66
0.50
A
MET
65
A
MET
65
20
A
PRO
66
A
PRO
66
0.34
A
MET
65
A
MET
65
21
A
PRO
66
A
PRO
66
0.29
A
MET
65
A
MET
65
22
A
PRO
66
A
PRO
66
0.18
A
MET
65
A
MET
65
23
A
PRO
66
A
PRO
66
0.20
A
MET
65
A
MET
65
24
A
PRO
66
A
PRO
66
0.56
A
MET
65
A
MET
65
25
A
PRO
66
A
PRO
66
0.32
A
MET
65
A
MET
65
26
A
PRO
66
A
PRO
66
0.51
A
MET
65
A
MET
65
27
A
PRO
66
A
PRO
66
0.61
A
MET
65
A
MET
65
28
A
PRO
66
A
PRO
66
0.40
A
MET
65
A
MET
65
29
A
PRO
66
A
PRO
66
0.26
A
MET
65
A
MET
65
30
A
PRO
66
A
PRO
66
0.52
GLRX_BPT4
UNP
1
P00276
1
87
1DE1
1
87
P00276
A
1
1
87
4
parallel
anti-parallel
anti-parallel
A
PHE
31
A
PHE
31
A
ASN
35
A
ASN
35
A
PHE
2
A
PHE
2
A
GLY
6
A
GLY
6
A
GLN
67
A
GLN
67
A
ALA
70
A
ALA
70
A
SER
74
A
SER
74
A
GLY
77
A
GLY
77
1
P 1