0.018495
0.000000
0.003803
0.000000
0.012306
0.000000
0.000000
0.000000
0.011946
0.00000
0.00000
0.00000
Sadasivan, C.
Yee, V.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
101.62
90.00
54.070
81.260
85.460
C H3 Cl
50.488
chloromethane
Chloro Methyl group
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H17 N4 O2 1
177.225
n
amino{[(4S)-4-amino-5,5-dihydroxypentyl]amino}methaniminium
peptide-like
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
CL
N
3
N
H
N
4
N
H
N
5
N
H
N
6
N
N
N
7
S
C
N
8
N
C
N
9
N
O
N
10
N
C
N
11
N
O
N
12
N
H
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
N
N
20
S
C
N
21
N
C
N
22
N
O
N
23
N
C
N
24
N
C
N
25
N
C
N
26
N
N
N
27
N
C
N
28
N
N
N
29
N
N
N
30
N
O
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
N
N
58
N
N
N
59
N
O
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
N
N
93
S
C
N
94
N
C
N
95
N
O
N
96
N
C
N
97
N
C
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
R
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
S
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
Y
180
N
N
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
S
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
N
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
S
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
NA
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
O
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
N
330
N
O
N
331
N
O
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
R
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
N
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
N
N
384
S
C
N
385
N
C
N
386
N
O
N
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
N
394
N
O
N
395
N
O
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
N
412
N
C
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
doub
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
doub
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
doub
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
Y
172
N
sing
Y
173
N
doub
Y
174
N
doub
N
175
N
sing
Y
176
N
sing
N
177
N
sing
Y
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
doub
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
Y
280
N
doub
Y
281
N
sing
Y
282
N
sing
N
283
N
sing
Y
284
N
doub
N
285
N
sing
Y
286
N
doub
N
287
N
sing
Y
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
sing
Y
358
N
doub
N
359
N
sing
Y
360
N
doub
N
361
N
sing
Y
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
275
36942
36948
10.1074/jbc.M006076200
10956659
Interaction of the factor XIII activation peptide with alpha -thrombin. Crystal structure of its enzyme-substrate analog complex.
2000
US
Protein Sci.
PRCIEI
0795
0961-8368
1
426
The Refined 1.9 Angstroms X-Ray Crystal Structure of D-Phe-Pro-Arg Chloromethylketone-Inhibited Human Alpha-Thrombin: Structure Analysis, Overall Structure, Electrostatic Properties, Detailed Active-Site Geometry, and Structure-Function Relationships
1992
IX
Eur.J.Biochem.
EJBCAI
0262
0014-2956
206
187
The Interaction of Thrombin with Fibrinogen: A Structural Basis for its Specificity
1992
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
91
7296
Three-Dimensional Structure of a Transglutaminase: Human Blood Coagulation Factor Xiii
1994
10.2210/pdb1de7/pdb
pdb_00001de7
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
93.0
1
YALE MIRROR
IMAGE PLATE
1998-11-10
RIGAKU RAXIS IV
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH3R
4096.534
ALPHA-THROMBIN (LIGHT CHAIN)
3.4.21.5
2
nat
polymer
29780.219
ALPHA-THROMBIN (HEAVY CHAIN)
3.4.21.5
2
nat
polymer
1132.761
FACTOR XIII ACTIVATION PEPTIDE (28-37)
2
syn
polymer
22.990
SODIUM ION
2
syn
non-polymer
18.015
water
479
nat
water
no
no
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR
L,J
polypeptide(L)
no
no
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM
LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL
QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY
THVFRLKKWIQKVIDQFGE
H,K
polypeptide(L)
no
yes
TVELQGVVP(AR7)(0QE)
TVELQGVVPRX
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
9606
Homo sapiens
PLASMA
human
Homo
sample
9606
Homo sapiens
PLASMA
1
2.70
55.0
5.50
PEG8000, SODIUM CHLORIDE, SODIUM CITRATE, pH 5.50
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2000-12-13
1
1
2007-10-16
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
1999-11-13
REL
REL
NA
SODIUM ION
HOH
water
THE FACTOR XIII DERIVED PEPTIDE CONTAIN A C-TERMINAL
CHLOROMETHYLKETONE GROUP AND IS COVALENTLY CONNECTED
TO ACTIVE_SITE RESIDUES OF THROMBIN.
THE UNBOUND FORM OF THE PEPTIDE IS THR-VAL-GLU-LEU-GLN-GLY-VAL-VAL-PRO-ARG-CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS:
1) VIA A HEMIKETAL GROUP TO OG SER H 195;
2) VIA A METHYLENE GROUP TO NE2 HIS H 57.
CHYMOTRYPSINOGEN NUMBERING (RATHER THAN SEQUENTIAL) SYSTEM
IS USED FOR THROMBIN, BASED ON THE TOPOLOGICAL ALIGNMENT
WITH THE STRUCTURE OF CHYMOTRYPSINOGEN (W.BODE ET AL., 1989,
EMBO J. 4 8, 3467-3475).
PEPTIDE NUMBERING IS BASED ON THE CORRESPONDING RESIDUES
IN FACTOR XIII
1AHT
THROMBIN CRYSTAL STRUCTURE WITH PDB ID 1AHT
PDB
experimental model
NA
1
4
NA
NA
1
H
NA
2
4
NA
NA
2
K
HOH
20
5
HOH
HOH
20
L
HOH
122
5
HOH
HOH
122
L
HOH
123
5
HOH
HOH
123
L
HOH
141
5
HOH
HOH
141
L
HOH
161
5
HOH
HOH
161
L
HOH
172
5
HOH
HOH
172
L
HOH
195
5
HOH
HOH
195
L
HOH
219
5
HOH
HOH
219
L
HOH
247
5
HOH
HOH
247
L
HOH
249
5
HOH
HOH
249
L
HOH
252
5
HOH
HOH
252
L
HOH
256
5
HOH
HOH
256
L
HOH
260
5
HOH
HOH
260
L
HOH
263
5
HOH
HOH
263
L
HOH
281
5
HOH
HOH
281
L
HOH
295
5
HOH
HOH
295
L
HOH
308
5
HOH
HOH
308
L
HOH
321
5
HOH
HOH
321
L
HOH
331
5
HOH
HOH
331
L
HOH
337
5
HOH
HOH
337
L
HOH
344
5
HOH
HOH
344
L
HOH
347
5
HOH
HOH
347
L
HOH
362
5
HOH
HOH
362
L
HOH
374
5
HOH
HOH
374
L
HOH
380
5
HOH
HOH
380
L
HOH
400
5
HOH
HOH
400
L
HOH
403
5
HOH
HOH
403
L
HOH
426
5
HOH
HOH
426
L
HOH
249
5
HOH
HOH
249
H
HOH
250
5
HOH
HOH
250
H
HOH
251
5
HOH
HOH
251
H
HOH
252
5
HOH
HOH
252
H
HOH
253
5
HOH
HOH
253
H
HOH
254
5
HOH
HOH
254
H
HOH
255
5
HOH
HOH
255
H
HOH
256
5
HOH
HOH
256
H
HOH
257
5
HOH
HOH
257
H
HOH
258
5
HOH
HOH
258
H
HOH
259
5
HOH
HOH
259
H
HOH
260
5
HOH
HOH
260
H
HOH
261
5
HOH
HOH
261
H
HOH
262
5
HOH
HOH
262
H
HOH
263
5
HOH
HOH
263
H
HOH
264
5
HOH
HOH
264
H
HOH
265
5
HOH
HOH
265
H
HOH
266
5
HOH
HOH
266
H
HOH
267
5
HOH
HOH
267
H
HOH
268
5
HOH
HOH
268
H
HOH
269
5
HOH
HOH
269
H
HOH
270
5
HOH
HOH
270
H
HOH
271
5
HOH
HOH
271
H
HOH
272
5
HOH
HOH
272
H
HOH
273
5
HOH
HOH
273
H
HOH
274
5
HOH
HOH
274
H
HOH
275
5
HOH
HOH
275
H
HOH
276
5
HOH
HOH
276
H
HOH
277
5
HOH
HOH
277
H
HOH
278
5
HOH
HOH
278
H
HOH
279
5
HOH
HOH
279
H
HOH
280
5
HOH
HOH
280
H
HOH
281
5
HOH
HOH
281
H
HOH
282
5
HOH
HOH
282
H
HOH
283
5
HOH
HOH
283
H
HOH
284
5
HOH
HOH
284
H
HOH
285
5
HOH
HOH
285
H
HOH
286
5
HOH
HOH
286
H
HOH
287
5
HOH
HOH
287
H
HOH
288
5
HOH
HOH
288
H
HOH
289
5
HOH
HOH
289
H
HOH
290
5
HOH
HOH
290
H
HOH
291
5
HOH
HOH
291
H
HOH
292
5
HOH
HOH
292
H
HOH
293
5
HOH
HOH
293
H
HOH
294
5
HOH
HOH
294
H
HOH
295
5
HOH
HOH
295
H
HOH
296
5
HOH
HOH
296
H
HOH
297
5
HOH
HOH
297
H
HOH
298
5
HOH
HOH
298
H
HOH
299
5
HOH
HOH
299
H
HOH
300
5
HOH
HOH
300
H
HOH
301
5
HOH
HOH
301
H
HOH
302
5
HOH
HOH
302
H
HOH
303
5
HOH
HOH
303
H
HOH
304
5
HOH
HOH
304
H
HOH
305
5
HOH
HOH
305
H
HOH
306
5
HOH
HOH
306
H
HOH
307
5
HOH
HOH
307
H
HOH
308
5
HOH
HOH
308
H
HOH
309
5
HOH
HOH
309
H
HOH
310
5
HOH
HOH
310
H
HOH
311
5
HOH
HOH
311
H
HOH
312
5
HOH
HOH
312
H
HOH
313
5
HOH
HOH
313
H
HOH
314
5
HOH
HOH
314
H
HOH
315
5
HOH
HOH
315
H
HOH
316
5
HOH
HOH
316
H
HOH
317
5
HOH
HOH
317
H
HOH
318
5
HOH
HOH
318
H
HOH
319
5
HOH
HOH
319
H
HOH
320
5
HOH
HOH
320
H
HOH
321
5
HOH
HOH
321
H
HOH
322
5
HOH
HOH
322
H
HOH
323
5
HOH
HOH
323
H
HOH
324
5
HOH
HOH
324
H
HOH
325
5
HOH
HOH
325
H
HOH
326
5
HOH
HOH
326
H
HOH
327
5
HOH
HOH
327
H
HOH
328
5
HOH
HOH
328
H
HOH
329
5
HOH
HOH
329
H
HOH
330
5
HOH
HOH
330
H
HOH
331
5
HOH
HOH
331
H
HOH
332
5
HOH
HOH
332
H
HOH
333
5
HOH
HOH
333
H
HOH
334
5
HOH
HOH
334
H
HOH
335
5
HOH
HOH
335
H
HOH
336
5
HOH
HOH
336
H
HOH
337
5
HOH
HOH
337
H
HOH
338
5
HOH
HOH
338
H
HOH
339
5
HOH
HOH
339
H
HOH
340
5
HOH
HOH
340
H
HOH
341
5
HOH
HOH
341
H
HOH
342
5
HOH
HOH
342
H
HOH
343
5
HOH
HOH
343
H
HOH
344
5
HOH
HOH
344
H
HOH
345
5
HOH
HOH
345
H
HOH
346
5
HOH
HOH
346
H
HOH
347
5
HOH
HOH
347
H
HOH
348
5
HOH
HOH
348
H
HOH
349
5
HOH
HOH
349
H
HOH
350
5
HOH
HOH
350
H
HOH
351
5
HOH
HOH
351
H
HOH
352
5
HOH
HOH
352
H
HOH
353
5
HOH
HOH
353
H
HOH
354
5
HOH
HOH
354
H
HOH
355
5
HOH
HOH
355
H
HOH
356
5
HOH
HOH
356
H
HOH
357
5
HOH
HOH
357
H
HOH
358
5
HOH
HOH
358
H
HOH
359
5
HOH
HOH
359
H
HOH
360
5
HOH
HOH
360
H
HOH
361
5
HOH
HOH
361
H
HOH
362
5
HOH
HOH
362
H
HOH
363
5
HOH
HOH
363
H
HOH
364
5
HOH
HOH
364
H
HOH
365
5
HOH
HOH
365
H
HOH
366
5
HOH
HOH
366
H
HOH
367
5
HOH
HOH
367
H
HOH
368
5
HOH
HOH
368
H
HOH
369
5
HOH
HOH
369
H
HOH
370
5
HOH
HOH
370
H
HOH
371
5
HOH
HOH
371
H
HOH
372
5
HOH
HOH
372
H
HOH
373
5
HOH
HOH
373
H
HOH
374
5
HOH
HOH
374
H
HOH
375
5
HOH
HOH
375
H
HOH
376
5
HOH
HOH
376
H
HOH
377
5
HOH
HOH
377
H
HOH
378
5
HOH
HOH
378
H
HOH
379
5
HOH
HOH
379
H
HOH
380
5
HOH
HOH
380
H
HOH
381
5
HOH
HOH
381
H
HOH
382
5
HOH
HOH
382
H
HOH
383
5
HOH
HOH
383
H
HOH
384
5
HOH
HOH
384
H
HOH
385
5
HOH
HOH
385
H
HOH
386
5
HOH
HOH
386
H
HOH
387
5
HOH
HOH
387
H
HOH
388
5
HOH
HOH
388
H
HOH
389
5
HOH
HOH
389
H
HOH
390
5
HOH
HOH
390
H
HOH
391
5
HOH
HOH
391
H
HOH
392
5
HOH
HOH
392
H
HOH
393
5
HOH
HOH
393
H
HOH
394
5
HOH
HOH
394
H
HOH
395
5
HOH
HOH
395
H
HOH
396
5
HOH
HOH
396
H
HOH
397
5
HOH
HOH
397
H
HOH
398
5
HOH
HOH
398
H
HOH
399
5
HOH
HOH
399
H
HOH
400
5
HOH
HOH
400
H
HOH
401
5
HOH
HOH
401
H
HOH
402
5
HOH
HOH
402
H
HOH
403
5
HOH
HOH
403
H
HOH
404
5
HOH
HOH
404
H
HOH
405
5
HOH
HOH
405
H
HOH
406
5
HOH
HOH
406
H
HOH
407
5
HOH
HOH
407
H
HOH
408
5
HOH
HOH
408
H
HOH
409
5
HOH
HOH
409
H
HOH
410
5
HOH
HOH
410
H
HOH
411
5
HOH
HOH
411
H
HOH
412
5
HOH
HOH
412
H
HOH
413
5
HOH
HOH
413
H
HOH
414
5
HOH
HOH
414
H
HOH
415
5
HOH
HOH
415
H
HOH
416
5
HOH
HOH
416
H
HOH
417
5
HOH
HOH
417
H
HOH
418
5
HOH
HOH
418
H
HOH
419
5
HOH
HOH
419
H
HOH
420
5
HOH
HOH
420
H
HOH
421
5
HOH
HOH
421
H
HOH
422
5
HOH
HOH
422
H
HOH
423
5
HOH
HOH
423
H
HOH
424
5
HOH
HOH
424
H
HOH
425
5
HOH
HOH
425
H
HOH
426
5
HOH
HOH
426
H
HOH
427
5
HOH
HOH
427
H
HOH
428
5
HOH
HOH
428
H
HOH
429
5
HOH
HOH
429
H
HOH
430
5
HOH
HOH
430
H
HOH
431
5
HOH
HOH
431
H
HOH
432
5
HOH
HOH
432
H
HOH
433
5
HOH
HOH
433
H
HOH
434
5
HOH
HOH
434
H
HOH
435
5
HOH
HOH
435
H
HOH
436
5
HOH
HOH
436
H
HOH
437
5
HOH
HOH
437
H
HOH
438
5
HOH
HOH
438
H
HOH
439
5
HOH
HOH
439
H
HOH
440
5
HOH
HOH
440
H
HOH
441
5
HOH
HOH
441
H
HOH
442
5
HOH
HOH
442
H
HOH
443
5
HOH
HOH
443
H
HOH
444
5
HOH
HOH
444
H
HOH
445
5
HOH
HOH
445
H
HOH
446
5
HOH
HOH
446
H
HOH
447
5
HOH
HOH
447
H
HOH
448
5
HOH
HOH
448
H
HOH
449
5
HOH
HOH
449
H
HOH
450
5
HOH
HOH
450
H
HOH
451
5
HOH
HOH
451
H
HOH
452
5
HOH
HOH
452
H
HOH
453
5
HOH
HOH
453
H
HOH
454
5
HOH
HOH
454
H
HOH
455
5
HOH
HOH
455
H
HOH
456
5
HOH
HOH
456
H
HOH
457
5
HOH
HOH
457
H
HOH
458
5
HOH
HOH
458
H
HOH
459
5
HOH
HOH
459
H
HOH
460
5
HOH
HOH
460
H
HOH
461
5
HOH
HOH
461
H
HOH
462
5
HOH
HOH
462
H
HOH
463
5
HOH
HOH
463
H
HOH
464
5
HOH
HOH
464
H
HOH
465
5
HOH
HOH
465
H
HOH
466
5
HOH
HOH
466
H
HOH
467
5
HOH
HOH
467
H
HOH
468
5
HOH
HOH
468
H
HOH
469
5
HOH
HOH
469
H
HOH
470
5
HOH
HOH
470
H
HOH
471
5
HOH
HOH
471
H
HOH
472
5
HOH
HOH
472
H
HOH
473
5
HOH
HOH
473
H
HOH
474
5
HOH
HOH
474
H
HOH
475
5
HOH
HOH
475
H
HOH
476
5
HOH
HOH
476
H
HOH
477
5
HOH
HOH
477
H
HOH
478
5
HOH
HOH
478
H
HOH
479
5
HOH
HOH
479
H
HOH
480
5
HOH
HOH
480
H
HOH
481
5
HOH
HOH
481
H
HOH
482
5
HOH
HOH
482
H
HOH
483
5
HOH
HOH
483
H
HOH
484
5
HOH
HOH
484
H
HOH
485
5
HOH
HOH
485
H
HOH
486
5
HOH
HOH
486
H
HOH
487
5
HOH
HOH
487
H
HOH
488
5
HOH
HOH
488
H
HOH
489
5
HOH
HOH
489
H
HOH
490
5
HOH
HOH
490
H
HOH
491
5
HOH
HOH
491
H
HOH
492
5
HOH
HOH
492
H
HOH
493
5
HOH
HOH
493
H
HOH
494
5
HOH
HOH
494
H
HOH
495
5
HOH
HOH
495
H
HOH
496
5
HOH
HOH
496
H
HOH
497
5
HOH
HOH
497
H
HOH
498
5
HOH
HOH
498
H
HOH
499
5
HOH
HOH
499
H
HOH
500
5
HOH
HOH
500
H
HOH
501
5
HOH
HOH
501
H
HOH
502
5
HOH
HOH
502
H
HOH
54
5
HOH
HOH
54
J
HOH
183
5
HOH
HOH
183
J
HOH
209
5
HOH
HOH
209
J
HOH
235
5
HOH
HOH
235
J
HOH
237
5
HOH
HOH
237
J
HOH
257
5
HOH
HOH
257
J
HOH
267
5
HOH
HOH
267
J
HOH
323
5
HOH
HOH
323
J
HOH
330
5
HOH
HOH
330
J
HOH
399
5
HOH
HOH
399
J
HOH
409
5
HOH
HOH
409
J
HOH
441
5
HOH
HOH
441
J
HOH
446
5
HOH
HOH
446
J
HOH
453
5
HOH
HOH
453
J
HOH
462
5
HOH
HOH
462
J
HOH
249
5
HOH
HOH
249
K
HOH
250
5
HOH
HOH
250
K
HOH
251
5
HOH
HOH
251
K
HOH
252
5
HOH
HOH
252
K
HOH
253
5
HOH
HOH
253
K
HOH
254
5
HOH
HOH
254
K
HOH
255
5
HOH
HOH
255
K
HOH
256
5
HOH
HOH
256
K
HOH
257
5
HOH
HOH
257
K
HOH
258
5
HOH
HOH
258
K
HOH
259
5
HOH
HOH
259
K
HOH
260
5
HOH
HOH
260
K
HOH
261
5
HOH
HOH
261
K
HOH
262
5
HOH
HOH
262
K
HOH
263
5
HOH
HOH
263
K
HOH
264
5
HOH
HOH
264
K
HOH
265
5
HOH
HOH
265
K
HOH
266
5
HOH
HOH
266
K
HOH
267
5
HOH
HOH
267
K
HOH
268
5
HOH
HOH
268
K
HOH
269
5
HOH
HOH
269
K
HOH
270
5
HOH
HOH
270
K
HOH
271
5
HOH
HOH
271
K
HOH
272
5
HOH
HOH
272
K
HOH
273
5
HOH
HOH
273
K
HOH
274
5
HOH
HOH
274
K
HOH
275
5
HOH
HOH
275
K
HOH
276
5
HOH
HOH
276
K
HOH
277
5
HOH
HOH
277
K
HOH
278
5
HOH
HOH
278
K
HOH
279
5
HOH
HOH
279
K
HOH
280
5
HOH
HOH
280
K
HOH
281
5
HOH
HOH
281
K
HOH
282
5
HOH
HOH
282
K
HOH
283
5
HOH
HOH
283
K
HOH
284
5
HOH
HOH
284
K
HOH
285
5
HOH
HOH
285
K
HOH
286
5
HOH
HOH
286
K
HOH
287
5
HOH
HOH
287
K
HOH
288
5
HOH
HOH
288
K
HOH
289
5
HOH
HOH
289
K
HOH
290
5
HOH
HOH
290
K
HOH
291
5
HOH
HOH
291
K
HOH
292
5
HOH
HOH
292
K
HOH
293
5
HOH
HOH
293
K
HOH
294
5
HOH
HOH
294
K
HOH
295
5
HOH
HOH
295
K
HOH
296
5
HOH
HOH
296
K
HOH
297
5
HOH
HOH
297
K
HOH
298
5
HOH
HOH
298
K
HOH
299
5
HOH
HOH
299
K
HOH
300
5
HOH
HOH
300
K
HOH
301
5
HOH
HOH
301
K
HOH
302
5
HOH
HOH
302
K
HOH
303
5
HOH
HOH
303
K
HOH
304
5
HOH
HOH
304
K
HOH
305
5
HOH
HOH
305
K
HOH
306
5
HOH
HOH
306
K
HOH
307
5
HOH
HOH
307
K
HOH
308
5
HOH
HOH
308
K
HOH
309
5
HOH
HOH
309
K
HOH
310
5
HOH
HOH
310
K
HOH
311
5
HOH
HOH
311
K
HOH
312
5
HOH
HOH
312
K
HOH
313
5
HOH
HOH
313
K
HOH
314
5
HOH
HOH
314
K
HOH
315
5
HOH
HOH
315
K
HOH
316
5
HOH
HOH
316
K
HOH
317
5
HOH
HOH
317
K
HOH
318
5
HOH
HOH
318
K
HOH
319
5
HOH
HOH
319
K
HOH
320
5
HOH
HOH
320
K
HOH
321
5
HOH
HOH
321
K
HOH
322
5
HOH
HOH
322
K
HOH
323
5
HOH
HOH
323
K
HOH
324
5
HOH
HOH
324
K
HOH
325
5
HOH
HOH
325
K
HOH
326
5
HOH
HOH
326
K
HOH
327
5
HOH
HOH
327
K
HOH
328
5
HOH
HOH
328
K
HOH
329
5
HOH
HOH
329
K
HOH
330
5
HOH
HOH
330
K
HOH
331
5
HOH
HOH
331
K
HOH
332
5
HOH
HOH
332
K
HOH
333
5
HOH
HOH
333
K
HOH
334
5
HOH
HOH
334
K
HOH
335
5
HOH
HOH
335
K
HOH
336
5
HOH
HOH
336
K
HOH
337
5
HOH
HOH
337
K
HOH
338
5
HOH
HOH
338
K
HOH
339
5
HOH
HOH
339
K
HOH
340
5
HOH
HOH
340
K
HOH
341
5
HOH
HOH
341
K
HOH
342
5
HOH
HOH
342
K
HOH
343
5
HOH
HOH
343
K
HOH
344
5
HOH
HOH
344
K
HOH
345
5
HOH
HOH
345
K
HOH
346
5
HOH
HOH
346
K
HOH
347
5
HOH
HOH
347
K
HOH
348
5
HOH
HOH
348
K
HOH
349
5
HOH
HOH
349
K
HOH
350
5
HOH
HOH
350
K
HOH
351
5
HOH
HOH
351
K
HOH
352
5
HOH
HOH
352
K
HOH
353
5
HOH
HOH
353
K
HOH
354
5
HOH
HOH
354
K
HOH
355
5
HOH
HOH
355
K
HOH
356
5
HOH
HOH
356
K
HOH
357
5
HOH
HOH
357
K
HOH
358
5
HOH
HOH
358
K
HOH
359
5
HOH
HOH
359
K
HOH
360
5
HOH
HOH
360
K
HOH
361
5
HOH
HOH
361
K
HOH
362
5
HOH
HOH
362
K
HOH
363
5
HOH
HOH
363
K
HOH
364
5
HOH
HOH
364
K
HOH
365
5
HOH
HOH
365
K
HOH
366
5
HOH
HOH
366
K
HOH
367
5
HOH
HOH
367
K
HOH
368
5
HOH
HOH
368
K
HOH
369
5
HOH
HOH
369
K
HOH
370
5
HOH
HOH
370
K
HOH
371
5
HOH
HOH
371
K
HOH
372
5
HOH
HOH
372
K
HOH
373
5
HOH
HOH
373
K
HOH
374
5
HOH
HOH
374
K
HOH
375
5
HOH
HOH
375
K
HOH
376
5
HOH
HOH
376
K
HOH
377
5
HOH
HOH
377
K
HOH
378
5
HOH
HOH
378
K
HOH
379
5
HOH
HOH
379
K
HOH
380
5
HOH
HOH
380
K
HOH
381
5
HOH
HOH
381
K
HOH
382
5
HOH
HOH
382
K
HOH
383
5
HOH
HOH
383
K
HOH
384
5
HOH
HOH
384
K
HOH
385
5
HOH
HOH
385
K
HOH
386
5
HOH
HOH
386
K
HOH
387
5
HOH
HOH
387
K
HOH
388
5
HOH
HOH
388
K
HOH
389
5
HOH
HOH
389
K
HOH
390
5
HOH
HOH
390
K
HOH
391
5
HOH
HOH
391
K
HOH
392
5
HOH
HOH
392
K
HOH
393
5
HOH
HOH
393
K
HOH
394
5
HOH
HOH
394
K
HOH
395
5
HOH
HOH
395
K
HOH
396
5
HOH
HOH
396
K
HOH
397
5
HOH
HOH
397
K
HOH
398
5
HOH
HOH
398
K
HOH
399
5
HOH
HOH
399
K
HOH
400
5
HOH
HOH
400
K
HOH
401
5
HOH
HOH
401
K
HOH
402
5
HOH
HOH
402
K
HOH
403
5
HOH
HOH
403
K
HOH
404
5
HOH
HOH
404
K
HOH
405
5
HOH
HOH
405
K
HOH
406
5
HOH
HOH
406
K
HOH
407
5
HOH
HOH
407
K
HOH
408
5
HOH
HOH
408
K
HOH
409
5
HOH
HOH
409
K
HOH
410
5
HOH
HOH
410
K
HOH
411
5
HOH
HOH
411
K
HOH
412
5
HOH
HOH
412
K
HOH
413
5
HOH
HOH
413
K
HOH
414
5
HOH
HOH
414
K
HOH
415
5
HOH
HOH
415
K
HOH
416
5
HOH
HOH
416
K
HOH
417
5
HOH
HOH
417
K
HOH
114
5
HOH
HOH
114
A
HOH
118
5
HOH
HOH
118
A
HOH
140
5
HOH
HOH
140
A
HOH
150
5
HOH
HOH
150
A
HOH
193
5
HOH
HOH
193
A
HOH
210
5
HOH
HOH
210
A
HOH
255
5
HOH
HOH
255
A
HOH
275
5
HOH
HOH
275
A
HOH
301
5
HOH
HOH
301
A
HOH
377
5
HOH
HOH
377
A
HOH
415
5
HOH
HOH
415
A
HOH
430
5
HOH
HOH
430
A
HOH
376
5
HOH
HOH
376
B
n
1
-4
L
n
2
-3
L
n
3
-2
L
n
4
-1
L
n
5
0
L
GLU
1
n
6
C
GLU
1
L
ALA
1
n
7
B
ALA
1
L
ASP
1
n
8
A
ASP
1
L
CYS
1
n
9
CYS
1
L
GLY
2
n
10
GLY
2
L
LEU
3
n
11
LEU
3
L
ARG
4
n
12
ARG
4
L
PRO
5
n
13
PRO
5
L
LEU
6
n
14
LEU
6
L
PHE
7
n
15
PHE
7
L
GLU
8
n
16
GLU
8
L
LYS
9
n
17
LYS
9
L
LYS
10
n
18
LYS
10
L
SER
11
n
19
SER
11
L
LEU
12
n
20
LEU
12
L
GLU
13
n
21
GLU
13
L
ASP
14
n
22
ASP
14
L
LYS
14
n
23
A
LYS
14
L
THR
14
n
24
B
THR
14
L
GLU
14
n
25
C
GLU
14
L
ARG
14
n
26
D
ARG
14
L
GLU
14
n
27
E
GLU
14
L
LEU
14
n
28
F
LEU
14
L
LEU
14
n
29
G
LEU
14
L
GLU
14
n
30
H
GLU
14
L
SER
14
n
31
I
SER
14
L
TYR
14
n
32
J
TYR
14
L
ILE
14
n
33
K
ILE
14
L
n
34
15
L
n
35
16
L
n
36
17
L
ILE
16
n
1
ILE
16
H
VAL
17
n
2
VAL
17
H
GLU
18
n
3
GLU
18
H
GLY
19
n
4
GLY
19
H
SER
20
n
5
SER
20
H
ASP
21
n
6
ASP
21
H
ALA
22
n
7
ALA
22
H
GLU
23
n
8
GLU
23
H
ILE
24
n
9
ILE
24
H
GLY
25
n
10
GLY
25
H
MET
26
n
11
MET
26
H
SER
27
n
12
SER
27
H
PRO
28
n
13
PRO
28
H
TRP
29
n
14
TRP
29
H
GLN
30
n
15
GLN
30
H
VAL
31
n
16
VAL
31
H
MET
32
n
17
MET
32
H
LEU
33
n
18
LEU
33
H
PHE
34
n
19
PHE
34
H
ARG
35
n
20
ARG
35
H
LYS
36
n
21
LYS
36
H
SER
36
n
22
A
SER
36
H
PRO
37
n
23
PRO
37
H
GLN
38
n
24
GLN
38
H
GLU
39
n
25
GLU
39
H
LEU
40
n
26
LEU
40
H
LEU
41
n
27
LEU
41
H
CYS
42
n
28
CYS
42
H
GLY
43
n
29
GLY
43
H
ALA
44
n
30
ALA
44
H
SER
45
n
31
SER
45
H
LEU
46
n
32
LEU
46
H
ILE
47
n
33
ILE
47
H
SER
48
n
34
SER
48
H
ASP
49
n
35
ASP
49
H
ARG
50
n
36
ARG
50
H
TRP
51
n
37
TRP
51
H
VAL
52
n
38
VAL
52
H
LEU
53
n
39
LEU
53
H
THR
54
n
40
THR
54
H
ALA
55
n
41
ALA
55
H
ALA
56
n
42
ALA
56
H
HIS
57
n
43
HIS
57
H
CYS
58
n
44
CYS
58
H
LEU
59
n
45
LEU
59
H
LEU
60
n
46
LEU
60
H
TYR
60
n
47
A
TYR
60
H
PRO
60
n
48
B
PRO
60
H
PRO
60
n
49
C
PRO
60
H
TRP
60
n
50
D
TRP
60
H
ASP
60
n
51
E
ASP
60
H
LYS
60
n
52
F
LYS
60
H
ASN
60
n
53
G
ASN
60
H
PHE
60
n
54
H
PHE
60
H
THR
60
n
55
I
THR
60
H
GLU
61
n
56
GLU
61
H
ASN
62
n
57
ASN
62
H
ASP
63
n
58
ASP
63
H
LEU
64
n
59
LEU
64
H
LEU
65
n
60
LEU
65
H
VAL
66
n
61
VAL
66
H
ARG
67
n
62
ARG
67
H
ILE
68
n
63
ILE
68
H
GLY
69
n
64
GLY
69
H
LYS
70
n
65
LYS
70
H
HIS
71
n
66
HIS
71
H
SER
72
n
67
SER
72
H
ARG
73
n
68
ARG
73
H
THR
74
n
69
THR
74
H
ARG
75
n
70
ARG
75
H
TYR
76
n
71
TYR
76
H
GLU
77
n
72
GLU
77
H
ARG
77
n
73
A
ARG
77
H
ASN
78
n
74
ASN
78
H
ILE
79
n
75
ILE
79
H
GLU
80
n
76
GLU
80
H
LYS
81
n
77
LYS
81
H
ILE
82
n
78
ILE
82
H
SER
83
n
79
SER
83
H
MET
84
n
80
MET
84
H
LEU
85
n
81
LEU
85
H
GLU
86
n
82
GLU
86
H
LYS
87
n
83
LYS
87
H
ILE
88
n
84
ILE
88
H
TYR
89
n
85
TYR
89
H
ILE
90
n
86
ILE
90
H
HIS
91
n
87
HIS
91
H
PRO
92
n
88
PRO
92
H
ARG
93
n
89
ARG
93
H
TYR
94
n
90
TYR
94
H
ASN
95
n
91
ASN
95
H
TRP
96
n
92
TRP
96
H
ARG
97
n
93
ARG
97
H
GLU
97
n
94
A
GLU
97
H
ASN
98
n
95
ASN
98
H
LEU
99
n
96
LEU
99
H
ASP
100
n
97
ASP
100
H
ARG
101
n
98
ARG
101
H
ASP
102
n
99
ASP
102
H
ILE
103
n
100
ILE
103
H
ALA
104
n
101
ALA
104
H
LEU
105
n
102
LEU
105
H
MET
106
n
103
MET
106
H
LYS
107
n
104
LYS
107
H
LEU
108
n
105
LEU
108
H
LYS
109
n
106
LYS
109
H
LYS
110
n
107
LYS
110
H
PRO
111
n
108
PRO
111
H
VAL
112
n
109
VAL
112
H
ALA
113
n
110
ALA
113
H
PHE
114
n
111
PHE
114
H
SER
115
n
112
SER
115
H
ASP
116
n
113
ASP
116
H
TYR
117
n
114
TYR
117
H
ILE
118
n
115
ILE
118
H
HIS
119
n
116
HIS
119
H
PRO
120
n
117
PRO
120
H
VAL
121
n
118
VAL
121
H
CYS
122
n
119
CYS
122
H
LEU
123
n
120
LEU
123
H
PRO
124
n
121
PRO
124
H
ASP
125
n
122
ASP
125
H
ARG
126
n
123
ARG
126
H
GLU
127
n
124
GLU
127
H
THR
128
n
125
THR
128
H
ALA
129
n
126
ALA
129
H
ALA
129
n
127
A
ALA
129
H
SER
129
n
128
B
SER
129
H
LEU
129
n
129
C
LEU
129
H
LEU
130
n
130
LEU
130
H
GLN
131
n
131
GLN
131
H
ALA
132
n
132
ALA
132
H
GLY
133
n
133
GLY
133
H
TYR
134
n
134
TYR
134
H
LYS
135
n
135
LYS
135
H
GLY
136
n
136
GLY
136
H
ARG
137
n
137
ARG
137
H
VAL
138
n
138
VAL
138
H
THR
139
n
139
THR
139
H
GLY
140
n
140
GLY
140
H
TRP
141
n
141
TRP
141
H
GLY
142
n
142
GLY
142
H
ASN
143
n
143
ASN
143
H
LEU
144
n
144
LEU
144
H
LYS
145
n
145
LYS
145
H
GLU
146
n
146
GLU
146
H
THR
147
n
147
THR
147
H
n
148
A
147
H
n
149
B
147
H
n
150
C
147
H
n
151
D
147
H
n
152
E
147
H
n
153
F
147
H
n
154
G
147
H
GLY
150
n
155
GLY
150
H
GLN
151
n
156
GLN
151
H
PRO
152
n
157
PRO
152
H
SER
153
n
158
SER
153
H
VAL
154
n
159
VAL
154
H
LEU
155
n
160
LEU
155
H
GLN
156
n
161
GLN
156
H
VAL
157
n
162
VAL
157
H
VAL
158
n
163
VAL
158
H
ASN
159
n
164
ASN
159
H
LEU
160
n
165
LEU
160
H
PRO
161
n
166
PRO
161
H
ILE
162
n
167
ILE
162
H
VAL
163
n
168
VAL
163
H
GLU
164
n
169
GLU
164
H
ARG
165
n
170
ARG
165
H
PRO
166
n
171
PRO
166
H
VAL
167
n
172
VAL
167
H
CYS
168
n
173
CYS
168
H
LYS
169
n
174
LYS
169
H
ASP
170
n
175
ASP
170
H
SER
171
n
176
SER
171
H
THR
172
n
177
THR
172
H
ARG
173
n
178
ARG
173
H
ILE
174
n
179
ILE
174
H
ARG
175
n
180
ARG
175
H
ILE
176
n
181
ILE
176
H
THR
177
n
182
THR
177
H
ASP
178
n
183
ASP
178
H
ASN
179
n
184
ASN
179
H
MET
180
n
185
MET
180
H
PHE
181
n
186
PHE
181
H
CYS
182
n
187
CYS
182
H
ALA
183
n
188
ALA
183
H
GLY
184
n
189
GLY
184
H
TYR
184
n
190
A
TYR
184
H
LYS
185
n
191
LYS
185
H
PRO
186
n
192
PRO
186
H
ASP
186
n
193
A
ASP
186
H
GLU
186
n
194
B
GLU
186
H
GLY
186
n
195
C
GLY
186
H
LYS
186
n
196
D
LYS
186
H
ARG
187
n
197
ARG
187
H
GLY
188
n
198
GLY
188
H
ASP
189
n
199
ASP
189
H
ALA
190
n
200
ALA
190
H
CYS
191
n
201
CYS
191
H
GLU
192
n
202
GLU
192
H
GLY
193
n
203
GLY
193
H
ASP
194
n
204
ASP
194
H
SER
195
n
205
SER
195
H
GLY
196
n
206
GLY
196
H
GLY
197
n
207
GLY
197
H
PRO
198
n
208
PRO
198
H
PHE
199
n
209
PHE
199
H
VAL
200
n
210
VAL
200
H
MET
201
n
211
MET
201
H
LYS
202
n
212
LYS
202
H
SER
203
n
213
SER
203
H
PRO
204
n
214
PRO
204
H
PHE
204
n
215
A
PHE
204
H
ASN
204
n
216
B
ASN
204
H
ASN
205
n
217
ASN
205
H
ARG
206
n
218
ARG
206
H
TRP
207
n
219
TRP
207
H
TYR
208
n
220
TYR
208
H
GLN
209
n
221
GLN
209
H
MET
210
n
222
MET
210
H
GLY
211
n
223
GLY
211
H
ILE
212
n
224
ILE
212
H
VAL
213
n
225
VAL
213
H
SER
214
n
226
SER
214
H
TRP
215
n
227
TRP
215
H
GLY
216
n
228
GLY
216
H
GLU
217
n
229
GLU
217
H
GLY
219
n
230
GLY
219
H
CYS
220
n
231
CYS
220
H
ASP
221
n
232
ASP
221
H
ARG
221
n
233
A
ARG
221
H
ASP
222
n
234
ASP
222
H
GLY
223
n
235
GLY
223
H
LYS
224
n
236
LYS
224
H
TYR
225
n
237
TYR
225
H
GLY
226
n
238
GLY
226
H
PHE
227
n
239
PHE
227
H
TYR
228
n
240
TYR
228
H
THR
229
n
241
THR
229
H
HIS
230
n
242
HIS
230
H
VAL
231
n
243
VAL
231
H
PHE
232
n
244
PHE
232
H
ARG
233
n
245
ARG
233
H
LEU
234
n
246
LEU
234
H
LYS
235
n
247
LYS
235
H
LYS
236
n
248
LYS
236
H
TRP
237
n
249
TRP
237
H
ILE
238
n
250
ILE
238
H
GLN
239
n
251
GLN
239
H
LYS
240
n
252
LYS
240
H
VAL
241
n
253
VAL
241
H
ILE
242
n
254
ILE
242
H
ASP
243
n
255
ASP
243
H
GLN
244
n
256
GLN
244
H
n
257
245
H
n
258
246
H
n
259
247
H
n
1
-6
J
n
2
-5
J
n
3
-4
J
n
4
-3
J
n
5
-2
J
n
6
-1
J
n
7
0
J
ASP
1
n
8
A
ASP
1
J
CYS
1
n
9
CYS
1
J
GLY
2
n
10
GLY
2
J
LEU
3
n
11
LEU
3
J
ARG
4
n
12
ARG
4
J
PRO
5
n
13
PRO
5
J
LEU
6
n
14
LEU
6
J
PHE
7
n
15
PHE
7
J
GLU
8
n
16
GLU
8
J
LYS
9
n
17
LYS
9
J
LYS
10
n
18
LYS
10
J
SER
11
n
19
SER
11
J
LEU
12
n
20
LEU
12
J
GLU
13
n
21
GLU
13
J
ASP
14
n
22
ASP
14
J
LYS
14
n
23
A
LYS
14
J
THR
14
n
24
B
THR
14
J
GLU
14
n
25
C
GLU
14
J
ARG
14
n
26
D
ARG
14
J
GLU
14
n
27
E
GLU
14
J
LEU
14
n
28
F
LEU
14
J
LEU
14
n
29
G
LEU
14
J
GLU
14
n
30
H
GLU
14
J
SER
14
n
31
I
SER
14
J
TYR
14
n
32
J
TYR
14
J
ILE
14
n
33
K
ILE
14
J
n
34
15
J
n
35
16
J
n
36
17
J
ILE
16
n
1
ILE
16
K
VAL
17
n
2
VAL
17
K
GLU
18
n
3
GLU
18
K
GLY
19
n
4
GLY
19
K
SER
20
n
5
SER
20
K
ASP
21
n
6
ASP
21
K
ALA
22
n
7
ALA
22
K
GLU
23
n
8
GLU
23
K
ILE
24
n
9
ILE
24
K
GLY
25
n
10
GLY
25
K
MET
26
n
11
MET
26
K
SER
27
n
12
SER
27
K
PRO
28
n
13
PRO
28
K
TRP
29
n
14
TRP
29
K
GLN
30
n
15
GLN
30
K
VAL
31
n
16
VAL
31
K
MET
32
n
17
MET
32
K
LEU
33
n
18
LEU
33
K
PHE
34
n
19
PHE
34
K
ARG
35
n
20
ARG
35
K
LYS
36
n
21
LYS
36
K
SER
36
n
22
A
SER
36
K
PRO
37
n
23
PRO
37
K
GLN
38
n
24
GLN
38
K
GLU
39
n
25
GLU
39
K
LEU
40
n
26
LEU
40
K
LEU
41
n
27
LEU
41
K
CYS
42
n
28
CYS
42
K
GLY
43
n
29
GLY
43
K
ALA
44
n
30
ALA
44
K
SER
45
n
31
SER
45
K
LEU
46
n
32
LEU
46
K
ILE
47
n
33
ILE
47
K
SER
48
n
34
SER
48
K
ASP
49
n
35
ASP
49
K
ARG
50
n
36
ARG
50
K
TRP
51
n
37
TRP
51
K
VAL
52
n
38
VAL
52
K
LEU
53
n
39
LEU
53
K
THR
54
n
40
THR
54
K
ALA
55
n
41
ALA
55
K
ALA
56
n
42
ALA
56
K
HIS
57
n
43
HIS
57
K
CYS
58
n
44
CYS
58
K
LEU
59
n
45
LEU
59
K
LEU
60
n
46
LEU
60
K
TYR
60
n
47
A
TYR
60
K
PRO
60
n
48
B
PRO
60
K
PRO
60
n
49
C
PRO
60
K
TRP
60
n
50
D
TRP
60
K
ASP
60
n
51
E
ASP
60
K
LYS
60
n
52
F
LYS
60
K
ASN
60
n
53
G
ASN
60
K
PHE
60
n
54
H
PHE
60
K
THR
60
n
55
I
THR
60
K
GLU
61
n
56
GLU
61
K
ASN
62
n
57
ASN
62
K
ASP
63
n
58
ASP
63
K
LEU
64
n
59
LEU
64
K
LEU
65
n
60
LEU
65
K
VAL
66
n
61
VAL
66
K
ARG
67
n
62
ARG
67
K
ILE
68
n
63
ILE
68
K
GLY
69
n
64
GLY
69
K
LYS
70
n
65
LYS
70
K
HIS
71
n
66
HIS
71
K
SER
72
n
67
SER
72
K
ARG
73
n
68
ARG
73
K
THR
74
n
69
THR
74
K
ARG
75
n
70
ARG
75
K
TYR
76
n
71
TYR
76
K
GLU
77
n
72
GLU
77
K
ARG
77
n
73
A
ARG
77
K
ASN
78
n
74
ASN
78
K
ILE
79
n
75
ILE
79
K
GLU
80
n
76
GLU
80
K
LYS
81
n
77
LYS
81
K
ILE
82
n
78
ILE
82
K
SER
83
n
79
SER
83
K
MET
84
n
80
MET
84
K
LEU
85
n
81
LEU
85
K
GLU
86
n
82
GLU
86
K
LYS
87
n
83
LYS
87
K
ILE
88
n
84
ILE
88
K
TYR
89
n
85
TYR
89
K
ILE
90
n
86
ILE
90
K
HIS
91
n
87
HIS
91
K
PRO
92
n
88
PRO
92
K
ARG
93
n
89
ARG
93
K
TYR
94
n
90
TYR
94
K
ASN
95
n
91
ASN
95
K
TRP
96
n
92
TRP
96
K
ARG
97
n
93
ARG
97
K
GLU
97
n
94
A
GLU
97
K
ASN
98
n
95
ASN
98
K
LEU
99
n
96
LEU
99
K
ASP
100
n
97
ASP
100
K
ARG
101
n
98
ARG
101
K
ASP
102
n
99
ASP
102
K
ILE
103
n
100
ILE
103
K
ALA
104
n
101
ALA
104
K
LEU
105
n
102
LEU
105
K
MET
106
n
103
MET
106
K
LYS
107
n
104
LYS
107
K
LEU
108
n
105
LEU
108
K
LYS
109
n
106
LYS
109
K
LYS
110
n
107
LYS
110
K
PRO
111
n
108
PRO
111
K
VAL
112
n
109
VAL
112
K
ALA
113
n
110
ALA
113
K
PHE
114
n
111
PHE
114
K
SER
115
n
112
SER
115
K
ASP
116
n
113
ASP
116
K
TYR
117
n
114
TYR
117
K
ILE
118
n
115
ILE
118
K
HIS
119
n
116
HIS
119
K
PRO
120
n
117
PRO
120
K
VAL
121
n
118
VAL
121
K
CYS
122
n
119
CYS
122
K
LEU
123
n
120
LEU
123
K
PRO
124
n
121
PRO
124
K
ASP
125
n
122
ASP
125
K
ARG
126
n
123
ARG
126
K
GLU
127
n
124
GLU
127
K
THR
128
n
125
THR
128
K
ALA
129
n
126
ALA
129
K
ALA
129
n
127
A
ALA
129
K
SER
129
n
128
B
SER
129
K
LEU
129
n
129
C
LEU
129
K
LEU
130
n
130
LEU
130
K
GLN
131
n
131
GLN
131
K
ALA
132
n
132
ALA
132
K
GLY
133
n
133
GLY
133
K
TYR
134
n
134
TYR
134
K
LYS
135
n
135
LYS
135
K
GLY
136
n
136
GLY
136
K
ARG
137
n
137
ARG
137
K
VAL
138
n
138
VAL
138
K
THR
139
n
139
THR
139
K
GLY
140
n
140
GLY
140
K
TRP
141
n
141
TRP
141
K
GLY
142
n
142
GLY
142
K
ASN
143
n
143
ASN
143
K
LEU
144
n
144
LEU
144
K
LYS
145
n
145
LYS
145
K
GLU
146
n
146
GLU
146
K
THR
147
n
147
THR
147
K
n
148
A
147
K
n
149
B
147
K
n
150
C
147
K
n
151
D
147
K
n
152
E
147
K
n
153
F
147
K
n
154
G
147
K
GLY
150
n
155
GLY
150
K
GLN
151
n
156
GLN
151
K
PRO
152
n
157
PRO
152
K
SER
153
n
158
SER
153
K
VAL
154
n
159
VAL
154
K
LEU
155
n
160
LEU
155
K
GLN
156
n
161
GLN
156
K
VAL
157
n
162
VAL
157
K
VAL
158
n
163
VAL
158
K
ASN
159
n
164
ASN
159
K
LEU
160
n
165
LEU
160
K
PRO
161
n
166
PRO
161
K
ILE
162
n
167
ILE
162
K
VAL
163
n
168
VAL
163
K
GLU
164
n
169
GLU
164
K
ARG
165
n
170
ARG
165
K
PRO
166
n
171
PRO
166
K
VAL
167
n
172
VAL
167
K
CYS
168
n
173
CYS
168
K
LYS
169
n
174
LYS
169
K
ASP
170
n
175
ASP
170
K
SER
171
n
176
SER
171
K
THR
172
n
177
THR
172
K
ARG
173
n
178
ARG
173
K
ILE
174
n
179
ILE
174
K
ARG
175
n
180
ARG
175
K
ILE
176
n
181
ILE
176
K
THR
177
n
182
THR
177
K
ASP
178
n
183
ASP
178
K
ASN
179
n
184
ASN
179
K
MET
180
n
185
MET
180
K
PHE
181
n
186
PHE
181
K
CYS
182
n
187
CYS
182
K
ALA
183
n
188
ALA
183
K
GLY
184
n
189
GLY
184
K
TYR
184
n
190
A
TYR
184
K
LYS
185
n
191
LYS
185
K
PRO
186
n
192
PRO
186
K
ASP
186
n
193
A
ASP
186
K
GLU
186
n
194
B
GLU
186
K
GLY
186
n
195
C
GLY
186
K
LYS
186
n
196
D
LYS
186
K
ARG
187
n
197
ARG
187
K
GLY
188
n
198
GLY
188
K
ASP
189
n
199
ASP
189
K
ALA
190
n
200
ALA
190
K
CYS
191
n
201
CYS
191
K
GLU
192
n
202
GLU
192
K
GLY
193
n
203
GLY
193
K
ASP
194
n
204
ASP
194
K
SER
195
n
205
SER
195
K
GLY
196
n
206
GLY
196
K
GLY
197
n
207
GLY
197
K
PRO
198
n
208
PRO
198
K
PHE
199
n
209
PHE
199
K
VAL
200
n
210
VAL
200
K
MET
201
n
211
MET
201
K
LYS
202
n
212
LYS
202
K
SER
203
n
213
SER
203
K
PRO
204
n
214
PRO
204
K
PHE
204
n
215
A
PHE
204
K
ASN
204
n
216
B
ASN
204
K
ASN
205
n
217
ASN
205
K
ARG
206
n
218
ARG
206
K
TRP
207
n
219
TRP
207
K
TYR
208
n
220
TYR
208
K
GLN
209
n
221
GLN
209
K
MET
210
n
222
MET
210
K
GLY
211
n
223
GLY
211
K
ILE
212
n
224
ILE
212
K
VAL
213
n
225
VAL
213
K
SER
214
n
226
SER
214
K
TRP
215
n
227
TRP
215
K
GLY
216
n
228
GLY
216
K
GLU
217
n
229
GLU
217
K
GLY
219
n
230
GLY
219
K
CYS
220
n
231
CYS
220
K
ASP
221
n
232
ASP
221
K
ARG
221
n
233
A
ARG
221
K
ASP
222
n
234
ASP
222
K
GLY
223
n
235
GLY
223
K
LYS
224
n
236
LYS
224
K
TYR
225
n
237
TYR
225
K
GLY
226
n
238
GLY
226
K
PHE
227
n
239
PHE
227
K
TYR
228
n
240
TYR
228
K
THR
229
n
241
THR
229
K
HIS
230
n
242
HIS
230
K
VAL
231
n
243
VAL
231
K
PHE
232
n
244
PHE
232
K
ARG
233
n
245
ARG
233
K
LEU
234
n
246
LEU
234
K
LYS
235
n
247
LYS
235
K
LYS
236
n
248
LYS
236
K
TRP
237
n
249
TRP
237
K
ILE
238
n
250
ILE
238
K
GLN
239
n
251
GLN
239
K
LYS
240
n
252
LYS
240
K
VAL
241
n
253
VAL
241
K
ILE
242
n
254
ILE
242
K
ASP
243
n
255
ASP
243
K
GLN
244
n
256
GLN
244
K
PHE
245
n
257
PHE
245
K
GLY
246
n
258
GLY
246
K
n
259
247
K
THR
28
n
1
THR
28
A
VAL
29
n
2
VAL
29
A
GLU
30
n
3
GLU
30
A
LEU
31
n
4
LEU
31
A
GLN
32
n
5
GLN
32
A
GLY
33
n
6
GLY
33
A
VAL
34
n
7
VAL
34
A
VAL
35
n
8
VAL
35
A
PRO
36
n
9
PRO
36
A
AR7
37
n
10
AR7
37
A
0QE
38
n
11
0QE
38
A
THR
28
n
1
THR
28
B
VAL
29
n
2
VAL
29
B
GLU
30
n
3
GLU
30
B
LEU
31
n
4
LEU
31
B
GLN
32
n
5
GLN
32
B
GLY
33
n
6
GLY
33
B
VAL
34
n
7
VAL
34
B
VAL
35
n
8
VAL
35
B
PRO
36
n
9
PRO
36
B
AR7
37
n
10
AR7
37
B
0QE
38
n
11
0QE
38
B
author_and_software_defined_assembly
PISA,PQS
3
trimeric
author_and_software_defined_assembly
PISA,PQS
3
trimeric
3710
-29
12690
3640
-29
12260
A
H
ARG
221
B
O
ARG
233
1_555
H
NA
1
G
NA
NA
1_555
H
LYS
224
B
O
LYS
236
1_555
95.5
A
H
ARG
221
B
O
ARG
233
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
249
J
O
HOH
1_555
161.3
H
LYS
224
B
O
LYS
236
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
249
J
O
HOH
1_555
69.9
A
H
ARG
221
B
O
ARG
233
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
250
J
O
HOH
1_555
101.4
H
LYS
224
B
O
LYS
236
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
250
J
O
HOH
1_555
163.0
H
HOH
249
J
O
HOH
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
250
J
O
HOH
1_555
93.9
A
H
ARG
221
B
O
ARG
233
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
251
J
O
HOH
1_555
95.7
H
LYS
224
B
O
LYS
236
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
251
J
O
HOH
1_555
77.8
H
HOH
249
J
O
HOH
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
251
J
O
HOH
1_555
92.6
H
HOH
250
J
O
HOH
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
251
J
O
HOH
1_555
98.5
A
H
ARG
221
B
O
ARG
233
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
252
J
O
HOH
1_555
91.2
H
LYS
224
B
O
LYS
236
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
252
J
O
HOH
1_555
97.6
H
HOH
249
J
O
HOH
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
252
J
O
HOH
1_555
79.7
H
HOH
250
J
O
HOH
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
252
J
O
HOH
1_555
83.9
H
HOH
251
J
O
HOH
1_555
H
NA
1
G
NA
NA
1_555
H
HOH
252
J
O
HOH
1_555
172.1
A
K
ARG
221
D
O
ARG
233
1_555
K
NA
2
H
NA
NA
1_555
K
LYS
224
D
O
LYS
236
1_555
87.4
A
K
ARG
221
D
O
ARG
233
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
249
L
O
HOH
1_555
155.0
K
LYS
224
D
O
LYS
236
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
249
L
O
HOH
1_555
71.7
A
K
ARG
221
D
O
ARG
233
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
250
L
O
HOH
1_555
105.9
K
LYS
224
D
O
LYS
236
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
250
L
O
HOH
1_555
165.7
K
HOH
249
L
O
HOH
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
250
L
O
HOH
1_555
96.5
A
K
ARG
221
D
O
ARG
233
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
251
L
O
HOH
1_555
86.7
K
LYS
224
D
O
LYS
236
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
251
L
O
HOH
1_555
100.8
K
HOH
249
L
O
HOH
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
251
L
O
HOH
1_555
84.2
K
HOH
250
L
O
HOH
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
251
L
O
HOH
1_555
85.6
A
K
ARG
221
D
O
ARG
233
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
252
L
O
HOH
1_555
95.9
K
LYS
224
D
O
LYS
236
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
252
L
O
HOH
1_555
68.8
K
HOH
249
L
O
HOH
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
252
L
O
HOH
1_555
89.2
K
HOH
250
L
O
HOH
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
252
L
O
HOH
1_555
103.8
K
HOH
251
L
O
HOH
1_555
K
NA
2
H
NA
NA
1_555
K
HOH
252
L
O
HOH
1_555
169.1
A
AR7
37
E
AR7
10
ARG
B
AR7
37
F
AR7
10
ARG
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
O
LYS
81
B
O
LYS
77
H
N
ILE
68
B
N
ILE
63
H
O
LEU
65
B
O
LEU
60
H
N
PHE
34
B
N
PHE
19
H
O
VAL
31
B
O
VAL
16
H
N
ALA
44
B
N
ALA
30
H
O
VAL
17
B
O
VAL
2
H
N
MET
106
B
N
MET
103
H
O
LEU
105
B
O
LEU
102
H
N
TYR
89
B
N
TYR
85
H
O
GLY
136
B
O
GLY
136
H
N
LEU
160
B
N
LEU
165
H
O
PHE
181
B
O
PHE
186
H
N
TYR
228
B
N
TYR
240
H
O
PHE
227
B
O
PHE
239
H
N
TRP
215
B
N
TRP
227
H
O
TYR
208
B
O
TYR
220
H
N
MET
201
B
N
MET
211
K
O
LYS
81
D
O
LYS
77
K
N
ILE
68
D
N
ILE
63
K
O
LEU
65
D
O
LEU
60
K
N
PHE
34
D
N
PHE
19
K
O
VAL
31
D
O
VAL
16
K
N
ALA
44
D
N
ALA
30
K
O
VAL
52
D
O
VAL
38
K
N
MET
106
D
N
MET
103
K
O
LEU
105
D
O
LEU
102
K
N
TYR
89
D
N
TYR
85
K
O
GLY
136
D
O
GLY
136
K
N
LEU
160
D
N
LEU
165
K
O
PHE
181
D
O
PHE
186
K
N
TYR
228
D
N
TYR
240
K
O
PHE
227
D
O
PHE
239
K
N
TRP
215
D
N
TRP
227
K
O
TYR
208
D
O
TYR
220
K
N
MET
201
D
N
MET
211
1
K
CB
GLN
244
D
CB
GLN
256
1
Y
1
K
CG
GLN
244
D
CG
GLN
256
1
Y
1
K
CD
GLN
244
D
CD
GLN
256
1
Y
1
K
OE1
GLN
244
D
OE1
GLN
256
1
Y
1
K
NE2
GLN
244
D
NE2
GLN
256
1
Y
1
K
CB
PHE
245
D
CB
PHE
257
1
Y
1
K
CG
PHE
245
D
CG
PHE
257
1
Y
1
K
CD1
PHE
245
D
CD1
PHE
257
1
Y
1
K
CD2
PHE
245
D
CD2
PHE
257
1
Y
1
K
CE1
PHE
245
D
CE1
PHE
257
1
Y
1
K
CE2
PHE
245
D
CE2
PHE
257
1
Y
1
K
CZ
PHE
245
D
CZ
PHE
257
1
Y
1
L
THR
-4
A
THR
1
1
Y
1
L
PHE
-3
A
PHE
2
1
Y
1
L
GLY
-2
A
GLY
3
1
Y
1
L
SER
-1
A
SER
4
1
Y
1
L
GLY
0
A
GLY
5
1
Y
1
L
ASP
15
A
ASP
34
1
Y
1
L
GLY
16
A
GLY
35
1
Y
1
L
ARG
17
A
ARG
36
1
Y
A
1
H
TRP
147
B
TRP
148
1
Y
B
1
H
THR
147
B
THR
149
1
Y
C
1
H
ALA
147
B
ALA
150
1
Y
D
1
H
ASN
147
B
ASN
151
1
Y
E
1
H
VAL
147
B
VAL
152
1
Y
F
1
H
GLY
147
B
GLY
153
1
Y
G
1
H
LYS
147
B
LYS
154
1
Y
1
H
PHE
245
B
PHE
257
1
Y
1
H
GLY
246
B
GLY
258
1
Y
1
H
GLU
247
B
GLU
259
1
Y
1
J
THR
-6
C
THR
1
1
Y
1
J
PHE
-5
C
PHE
2
1
Y
1
J
GLY
-4
C
GLY
3
1
Y
1
J
SER
-3
C
SER
4
1
Y
1
J
GLY
-2
C
GLY
5
1
Y
1
J
GLU
-1
C
GLU
6
1
Y
1
J
ALA
0
C
ALA
7
1
Y
1
J
ASP
15
C
ASP
34
1
Y
1
J
GLY
16
C
GLY
35
1
Y
1
J
ARG
17
C
ARG
36
1
Y
A
1
K
TRP
147
D
TRP
148
1
Y
B
1
K
THR
147
D
THR
149
1
Y
C
1
K
ALA
147
D
ALA
150
1
Y
D
1
K
ASN
147
D
ASN
151
1
Y
E
1
K
VAL
147
D
VAL
152
1
Y
F
1
K
GLY
147
D
GLY
153
1
Y
G
1
K
LYS
147
D
LYS
154
1
Y
1
K
GLU
247
D
GLU
259
1
Y
1
K
B
OG
C
SER
AR7
195
37
1.39
1
H
A
OG
C
SER
AR7
195
37
1.39
1
A
A
C
C1
AR7
0QE
37
38
1.53
1
B
B
C
C1
AR7
0QE
37
38
1.54
1
K
B
OG
O
SER
AR7
195
37
2.00
1
H
A
OG
C1
SER
0QE
195
38
2.15
1
H
A
OG
O
SER
AR7
195
37
2.16
1
H
TYR
225
0.108
SIDE CHAIN
1
K
TYR
225
0.096
SIDE CHAIN
1
5.90
0.80
106.30
112.20
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
29
29
29
N
1
-5.53
0.80
107.30
101.77
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
29
29
29
N
1
5.84
0.80
106.30
112.14
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
51
51
51
N
1
-6.00
0.80
107.30
101.30
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
51
51
51
N
1
5.40
0.90
133.90
139.30
H
H
H
CG
CD2
CE3
TRP
TRP
TRP
51
51
51
N
D
D
D
1
5.69
0.80
106.30
111.99
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
60
60
60
N
D
D
D
1
-5.65
0.80
107.30
101.65
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
60
60
60
N
1
6.53
0.80
106.30
112.83
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
96
96
96
N
1
-6.02
0.80
107.30
101.28
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
96
96
96
N
1
5.69
0.80
106.30
111.99
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
141
141
141
N
1
-5.54
0.80
107.30
101.76
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
141
141
141
N
1
7.55
1.10
114.20
121.75
H
H
H
CA
CB
SG
CYS
CYS
CYS
182
182
182
N
1
6.74
0.80
106.30
113.04
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
207
207
207
N
1
-6.12
0.80
107.30
101.18
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
207
207
207
N
1
5.56
0.80
106.30
111.86
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
215
215
215
N
1
-5.87
0.80
107.30
101.43
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
215
215
215
N
1
6.44
0.80
106.30
112.74
H
H
H
CD1
CG
CD2
TRP
TRP
TRP
237
237
237
N
1
-6.11
0.80
107.30
101.19
H
H
H
CE2
CD2
CG
TRP
TRP
TRP
237
237
237
N
1
6.10
0.80
106.30
112.40
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
29
29
29
N
1
-5.93
0.80
107.30
101.37
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
29
29
29
N
1
6.31
0.80
106.30
112.61
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
51
51
51
N
1
-5.93
0.80
107.30
101.37
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
51
51
51
N
D
D
D
1
5.69
0.80
106.30
111.99
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
60
60
60
N
D
D
D
1
-5.59
0.80
107.30
101.71
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
60
60
60
N
1
6.19
0.80
106.30
112.49
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
96
96
96
N
1
-6.12
0.80
107.30
101.18
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
96
96
96
N
1
6.07
0.80
106.30
112.37
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
141
141
141
N
1
-5.95
0.80
107.30
101.35
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
141
141
141
N
1
7.21
1.10
114.20
121.41
K
K
K
CA
CB
SG
CYS
CYS
CYS
182
182
182
N
1
5.26
0.80
106.30
111.56
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
207
207
207
N
1
-5.72
0.80
107.30
101.58
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
207
207
207
N
1
5.85
0.80
106.30
112.15
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
215
215
215
N
1
-5.87
0.80
107.30
101.43
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
215
215
215
N
1
6.37
0.80
106.30
112.67
K
K
K
CD1
CG
CD2
TRP
TRP
TRP
237
237
237
N
1
-6.02
0.80
107.30
101.28
K
K
K
CE2
CD2
CG
TRP
TRP
TRP
237
237
237
N
1
H
H
NE2
CD2
HIS
HIS
57
57
-0.073
0.011
1.373
1.300
N
1
H
H
NE2
CD2
HIS
HIS
71
71
-0.069
0.011
1.373
1.304
N
1
H
H
NE2
CD2
HIS
HIS
119
119
-0.068
0.011
1.373
1.305
N
1
H
H
NE2
CD2
HIS
HIS
230
230
-0.072
0.011
1.373
1.301
N
1
K
K
NE2
CD2
HIS
HIS
57
57
-0.072
0.011
1.373
1.301
N
1
K
K
NE2
CD2
HIS
HIS
71
71
-0.068
0.011
1.373
1.305
N
1
K
K
NE2
CD2
HIS
HIS
91
91
-0.067
0.011
1.373
1.306
N
1
K
K
NE2
CD2
HIS
HIS
119
119
-0.071
0.011
1.373
1.302
N
1
K
K
NE2
CD2
HIS
HIS
230
230
-0.071
0.011
1.373
1.302
N
1
L
PHE
7
-126.44
-77.83
E
1
H
ASP
60
59.26
15.99
G
1
H
ASN
60
-159.82
78.28
1
H
ASN
95
-117.65
76.80
1
H
SER
214
-129.16
-56.34
1
J
PHE
7
-127.64
-81.38
1
K
GLN
38
-59.31
97.96
G
1
K
ASN
60
-166.36
109.00
1
K
HIS
71
-122.61
-57.86
1
K
ASN
78
72.94
-6.00
1
K
ILE
79
-93.01
-66.28
1
K
CYS
191
-142.55
-153.12
1
K
SER
214
-129.45
-58.74
1
K
PHE
245
66.91
84.76
PARAM19.PRO
TOPH19.PRO
0.257
0.194
0.194
2.00
10.00
2226
44341
5.000
90.0
RANDOM
1000000.000
0.0010
1
2.000
MOLECULAR REPLACEMENT
THROMBIN CRYSTAL STRUCTURE WITH PDB ID 1AHT
2.00
10.00
479
5114
2
0
4633
0.009
2.46
0.3069
0.2718
2.09
4466
8
78.40
2.000
25.000
1DE7
45245
1.000
0.053
1
22.0000
2.700
91.8
0.157
2.00
2.07
1
2.10
79.3
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.851
INTERACTION OF FACTOR XIII ACTIVATION PEPTIDE WITH ALPHA-THROMBIN: CRYSTAL STRUCTURE OF THE ENZYME-SUBSTRATE COMPLEX
1
N
N
2
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
5
N
N
THERE ARE TWO INDEPENDENT COMPLEXES IN THE ASYMMETRIC
UNIT:
COMPLEX 1
ALPHA-THROMBIN: CHAINS L, H
FACTOR XIII PEPTIDE: CHAIN A
COMPLEX 2
ALPHA-THROMBIN: CHAINS J, K
FACTOR XIII PEPTIDE: CHAIN B
L
PHE
7
A
PHE
15
HELX_P
L
SER
11
A
SER
19
5
1
5
H
ALA
55
B
ALA
41
HELX_P
H
CYS
58
B
CYS
44
5
3
4
H
ASP
125
B
ASP
122
HELX_P
H
LEU
130
B
LEU
130
1
6
9
H
GLU
164
B
GLU
169
HELX_P
H
THR
172
B
THR
177
1
7
9
H
LEU
234
B
LEU
246
HELX_P
H
GLN
244
B
GLN
256
1
8
11
J
PHE
7
C
PHE
15
HELX_P
J
SER
11
C
SER
19
5
9
5
K
ALA
55
D
ALA
41
HELX_P
K
CYS
58
D
CYS
44
5
11
4
K
ASP
125
D
ASP
122
HELX_P
K
LEU
130
D
LEU
130
1
13
9
K
GLU
164
D
GLU
169
HELX_P
K
SER
171
D
SER
176
1
14
8
K
LEU
234
D
LEU
246
HELX_P
K
GLN
244
D
GLN
256
1
15
11
A
THR
28
E
THR
1
HELX_P
A
GLY
33
E
GLY
6
5
16
6
disulf
2.013
L
CYS
1
A
SG
CYS
9
1_555
H
CYS
122
B
SG
CYS
119
1_555
disulf
2.016
H
CYS
42
B
SG
CYS
28
1_555
H
CYS
58
B
SG
CYS
44
1_555
disulf
2.013
H
CYS
168
B
SG
CYS
173
1_555
H
CYS
182
B
SG
CYS
187
1_555
disulf
2.029
H
CYS
191
B
SG
CYS
201
1_555
H
CYS
220
B
SG
CYS
231
1_555
disulf
2.020
J
CYS
1
C
SG
CYS
9
1_555
K
CYS
122
D
SG
CYS
119
1_555
disulf
2.023
K
CYS
42
D
SG
CYS
28
1_555
K
CYS
58
D
SG
CYS
44
1_555
disulf
2.018
K
CYS
168
D
SG
CYS
173
1_555
K
CYS
182
D
SG
CYS
187
1_555
disulf
2.018
K
CYS
191
D
SG
CYS
201
1_555
K
CYS
220
D
SG
CYS
231
1_555
covale
1.446
one
H
HIS
57
B
NE2
HIS
43
1_555
A
0QE
38
E
C1
0QE
11
1_555
covale
1.456
one
K
HIS
57
D
NE2
HIS
43
1_555
B
0QE
38
F
C1
0QE
11
1_555
metalc
2.215
A
H
NA
1
G
NA
NA
1_555
H
ARG
221
B
O
ARG
233
1_555
metalc
2.182
H
NA
1
G
NA
NA
1_555
H
LYS
224
B
O
LYS
236
1_555
metalc
2.188
H
NA
1
G
NA
NA
1_555
H
HOH
249
J
O
HOH
1_555
metalc
2.161
H
NA
1
G
NA
NA
1_555
H
HOH
250
J
O
HOH
1_555
metalc
2.200
H
NA
1
G
NA
NA
1_555
H
HOH
251
J
O
HOH
1_555
metalc
2.217
H
NA
1
G
NA
NA
1_555
H
HOH
252
J
O
HOH
1_555
metalc
2.180
A
K
NA
2
H
NA
NA
1_555
K
ARG
221
D
O
ARG
233
1_555
metalc
2.159
K
NA
2
H
NA
NA
1_555
K
LYS
224
D
O
LYS
236
1_555
metalc
2.184
K
NA
2
H
NA
NA
1_555
K
HOH
249
L
O
HOH
1_555
metalc
2.155
K
NA
2
H
NA
NA
1_555
K
HOH
250
L
O
HOH
1_555
metalc
2.242
K
NA
2
H
NA
NA
1_555
K
HOH
251
L
O
HOH
1_555
metalc
2.157
K
NA
2
H
NA
NA
1_555
K
HOH
252
L
O
HOH
1_555
HYDROLASE/HYDROLASE SUBSTRATE
ENZYME-SUBSTRATE COMPLEX, ALPHA-THROMBIN, FACTOR XIII ACTIVATION PEPTIDE, HYDROLASE/PEPTIDE, BLOOD CLOTTING, HYDROLASE-HYDROLASE SUBSTRATE complex
H
SER
36
B
SER
22
A
1
H
PRO
37
B
PRO
23
-6.84
K
SER
36
D
SER
22
A
1
K
PRO
37
D
PRO
23
-1.89
K
PHE
245
D
PHE
257
1
K
GLY
246
D
GLY
258
0.32
THRB_HUMAN
UNP
1
328
P00734
THRB_HUMAN
UNP
2
364
P00734
1DE7
PDB
3
1DE7
328
363
1DE7
1
14
P00734
A
K
L
1
8
33
364
622
1DE7
16
244
P00734
H
2
1
256
328
363
1DE7
1
14
P00734
A
K
J
1
8
33
364
622
1DE7
16
244
P00734
K
2
1
256
28
38
1DE7
28
38
1DE7
A
3
1
11
28
38
1DE7
28
38
1DE7
B
3
1
11
4
3
2
4
4
3
2
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
LYS
81
B
LYS
77
H
MET
84
B
MET
80
H
LEU
64
B
LEU
59
H
ILE
68
B
ILE
63
H
GLN
30
B
GLN
15
H
ARG
35
B
ARG
20
H
GLU
39
B
GLU
25
H
SER
45
B
SER
31
H
TRP
51
B
TRP
37
H
THR
54
B
THR
40
H
ALA
104
B
ALA
101
H
LEU
108
B
LEU
105
H
LEU
59
B
LEU
45
H
ILE
90
B
ILE
86
H
LYS
135
B
LYS
135
H
GLY
140
B
GLY
140
H
GLN
156
B
GLN
161
H
PRO
161
B
PRO
166
H
MET
180
B
MET
185
H
ALA
183
B
ALA
188
H
GLY
226
B
GLY
238
H
HIS
230
B
HIS
242
H
TRP
207
B
TRP
219
H
TRP
215
B
TRP
227
H
PRO
198
B
PRO
208
H
LYS
202
B
LYS
212
K
LYS
81
D
LYS
77
K
MET
84
D
MET
80
K
LEU
64
D
LEU
59
K
ILE
68
D
ILE
63
K
GLN
30
D
GLN
15
K
ARG
35
D
ARG
20
K
GLU
39
D
GLU
25
K
SER
45
D
SER
31
K
TRP
51
D
TRP
37
K
THR
54
D
THR
40
K
ALA
104
D
ALA
101
K
LEU
108
D
LEU
105
K
LEU
85
D
LEU
81
K
ILE
90
D
ILE
86
K
LYS
135
D
LYS
135
K
GLY
140
D
GLY
140
K
GLN
156
D
GLN
161
K
PRO
161
D
PRO
166
K
MET
180
D
MET
185
K
ALA
183
D
ALA
188
K
GLY
226
D
GLY
238
K
HIS
230
D
HIS
242
K
TRP
207
D
TRP
219
K
TRP
215
D
TRP
227
K
PRO
198
D
PRO
208
K
LYS
202
D
LYS
212
Author
6
BINDING SITE FOR RESIDUE NA H 1
H
NA
1
Software
6
BINDING SITE FOR RESIDUE NA K 2
K
NA
2
Software
6
BINDING SITE FOR CHAIN A OF FACTOR XIII ACTIVATION PEPTIDE (28-37)
Software
26
BINDING SITE FOR CHAIN B OF FACTOR XIII ACTIVATION PEPTIDE (28-37)
Software
22
H
HIS
57
B
HIS
43
6
1_555
H
ASP
102
B
ASP
99
6
1_555
H
SER
195
B
SER
205
6
1_555
K
HIS
57
D
HIS
43
6
1_555
K
ASP
102
D
ASP
99
6
1_555
K
SER
195
D
SER
205
6
1_555
H
ARG
221
B
ARG
233
A
6
1_555
H
LYS
224
B
LYS
236
6
1_555
H
HOH
249
J
HOH
6
1_555
H
HOH
250
J
HOH
6
1_555
H
HOH
251
J
HOH
6
1_555
H
HOH
252
J
HOH
6
1_555
K
ARG
221
D
ARG
233
A
6
1_555
K
LYS
224
D
LYS
236
6
1_555
K
HOH
249
L
HOH
6
1_555
K
HOH
250
L
HOH
6
1_555
K
HOH
251
L
HOH
6
1_555
K
HOH
252
L
HOH
6
1_555
A
HOH
114
M
HOH
26
1_555
A
HOH
118
M
HOH
26
1_555
A
HOH
150
M
HOH
26
1_555
A
HOH
193
M
HOH
26
1_555
A
HOH
255
M
HOH
26
1_555
A
HOH
275
M
HOH
26
1_555
A
HOH
415
M
HOH
26
1_555
H
HIS
57
B
HIS
43
26
1_555
H
TYR
60
B
TYR
47
A
26
1_555
H
ARG
97
B
ARG
93
26
1_555
H
GLU
97
B
GLU
94
A
26
1_555
H
ILE
174
B
ILE
179
26
1_555
H
ASP
189
B
ASP
199
26
1_555
H
ALA
190
B
ALA
200
26
1_555
H
GLY
193
B
GLY
203
26
1_555
H
SER
195
B
SER
205
26
1_555
H
SER
214
B
SER
226
26
1_555
H
TRP
215
B
TRP
227
26
1_555
H
GLY
216
B
GLY
228
26
1_555
H
GLU
217
B
GLU
229
26
1_555
H
GLY
219
B
GLY
230
26
1_555
H
GLY
226
B
GLY
238
26
1_555
H
HOH
290
J
HOH
26
1_555
H
HOH
291
J
HOH
26
1_555
H
HOH
294
J
HOH
26
1_555
H
HOH
331
J
HOH
26
1_555
B
HOH
376
N
HOH
22
1_555
K
HIS
57
D
HIS
43
22
1_555
K
TYR
60
D
TYR
47
A
22
1_555
K
TRP
60
D
TRP
50
D
22
1_555
K
ARG
97
D
ARG
93
22
1_555
K
GLU
97
D
GLU
94
A
22
1_555
K
ARG
173
D
ARG
178
22
1_555
K
ILE
174
D
ILE
179
22
1_555
K
ASP
189
D
ASP
199
22
1_555
K
ALA
190
D
ALA
200
22
1_555
K
CYS
191
D
CYS
201
22
1_555
K
GLU
192
D
GLU
202
22
1_555
K
GLY
193
D
GLY
203
22
1_555
K
SER
195
D
SER
205
22
1_555
K
SER
214
D
SER
226
22
1_555
K
TRP
215
D
TRP
227
22
1_555
K
GLY
216
D
GLY
228
22
1_555
K
GLU
217
D
GLU
229
22
1_555
K
GLY
219
D
GLY
230
22
1_555
K
GLY
226
D
GLY
238
22
1_555
K
HOH
253
L
HOH
22
1_555
K
HOH
348
L
HOH
22
1_555
4
P 1 21 1