1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Krezel, A.M.
Wagner, G.
Seymour-Ulmer, J.
Lazarus, R.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
US
Science
SCIEAS
0038
0036-8075
264
1944
1947
8009227
Structure of the RGD protein decorsin: conserved motif and distinct function in leech proteins that affect blood clotting.
1994
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4388.874
DECORSIN
1
man
polymer
no
no
APRLPQCQGDDQEKCLCNKDECPPGQCRFPRGDADPYCE
APRLPQCQGDDQEKCLCNKDECPPGQCRFPRGDADPYCE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
North American leech
Macrobdella
sample
6405
BLOOD
Macrobdella decora
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conf
repository
Initial release
Version format compliance
Version format compliance
Derived calculations
Other
1
0
1994-08-31
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1994-05-17
REL
REL
25
ALA
1
n
1
ALA
1
A
PRO
2
n
2
PRO
2
A
ARG
3
n
3
ARG
3
A
LEU
4
n
4
LEU
4
A
PRO
5
n
5
PRO
5
A
GLN
6
n
6
GLN
6
A
CYS
7
n
7
CYS
7
A
GLN
8
n
8
GLN
8
A
GLY
9
n
9
GLY
9
A
ASP
10
n
10
ASP
10
A
ASP
11
n
11
ASP
11
A
GLN
12
n
12
GLN
12
A
GLU
13
n
13
GLU
13
A
LYS
14
n
14
LYS
14
A
CYS
15
n
15
CYS
15
A
LEU
16
n
16
LEU
16
A
CYS
17
n
17
CYS
17
A
ASN
18
n
18
ASN
18
A
LYS
19
n
19
LYS
19
A
ASP
20
n
20
ASP
20
A
GLU
21
n
21
GLU
21
A
CYS
22
n
22
CYS
22
A
PRO
23
n
23
PRO
23
A
PRO
24
n
24
PRO
24
A
GLY
25
n
25
GLY
25
A
GLN
26
n
26
GLN
26
A
CYS
27
n
27
CYS
27
A
ARG
28
n
28
ARG
28
A
PHE
29
n
29
PHE
29
A
PRO
30
n
30
PRO
30
A
ARG
31
n
31
ARG
31
A
GLY
32
n
32
GLY
32
A
ASP
33
n
33
ASP
33
A
ALA
34
n
34
ALA
34
A
ASP
35
n
35
ASP
35
A
PRO
36
n
36
PRO
36
A
TYR
37
n
37
TYR
37
A
CYS
38
n
38
CYS
38
A
GLU
39
n
39
GLU
39
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
CYS
7
A
N
CYS
7
A
O
LEU
16
A
O
LEU
16
A
O
CYS
15
A
O
CYS
15
A
N
CYS
22
A
N
CYS
22
A
N
ARG
28
A
N
ARG
28
A
O
TYR
37
A
O
TYR
37
1
3.74
0.50
120.30
124.04
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
1
3.66
0.50
120.30
123.96
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
1
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
2
3.73
0.50
120.30
124.03
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
2
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
2
3.74
0.50
120.30
124.04
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
3
3.71
0.50
120.30
124.01
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
3
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
3
3.66
0.50
120.30
123.96
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
4
3.87
0.50
120.30
124.17
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
4
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
4
3.65
0.50
120.30
123.95
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
5
3.81
0.50
120.30
124.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
5
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
5
3.77
0.50
120.30
124.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
6
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
6
3.56
0.50
120.30
123.86
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
6
4.00
0.50
120.30
124.30
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
7
3.76
0.50
120.30
124.06
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
7
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
7
3.95
0.50
120.30
124.25
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
8
3.77
0.50
120.30
124.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
8
3.63
0.50
120.30
123.93
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
8
3.79
0.50
120.30
124.09
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
9
3.71
0.50
120.30
124.01
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
9
3.66
0.50
120.30
123.96
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
9
3.73
0.50
120.30
124.03
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
10
3.81
0.50
120.30
124.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
10
3.67
0.50
120.30
123.97
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
10
3.76
0.50
120.30
124.06
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
11
3.84
0.50
120.30
124.14
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
11
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
11
3.72
0.50
120.30
124.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
12
3.80
0.50
120.30
124.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
12
3.60
0.50
120.30
123.90
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
12
3.88
0.50
120.30
124.18
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
13
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
13
3.74
0.50
120.30
124.04
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
13
3.66
0.50
120.30
123.96
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
14
3.76
0.50
120.30
124.06
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
14
3.69
0.50
120.30
123.99
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
14
3.76
0.50
120.30
124.06
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
15
3.66
0.50
120.30
123.96
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
15
3.69
0.50
120.30
123.99
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
15
3.77
0.50
120.30
124.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
16
3.85
0.50
120.30
124.15
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
16
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
16
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
17
3.71
0.50
120.30
124.01
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
17
3.65
0.50
120.30
123.95
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
17
3.81
0.50
120.30
124.11
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
18
3.82
0.50
120.30
124.12
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
18
3.67
0.50
120.30
123.97
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
18
3.80
0.50
120.30
124.10
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
19
3.94
0.50
120.30
124.24
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
19
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
19
3.77
0.50
120.30
124.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
20
3.75
0.50
120.30
124.05
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
20
3.64
0.50
120.30
123.94
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
20
3.72
0.50
120.30
124.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
21
3.88
0.50
120.30
124.18
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
21
3.75
0.50
120.30
124.05
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
21
3.71
0.50
120.30
124.01
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
22
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
22
3.72
0.50
120.30
124.02
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
22
3.74
0.50
120.30
124.04
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
23
3.70
0.50
120.30
124.00
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
23
3.59
0.50
120.30
123.89
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
23
3.76
0.50
120.30
124.06
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
24
3.85
0.50
120.30
124.15
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
24
3.66
0.50
120.30
123.96
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
24
3.68
0.50
120.30
123.98
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
25
3.71
0.50
120.30
124.01
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
3
3
3
N
25
3.67
0.50
120.30
123.97
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
28
28
28
N
25
3.77
0.50
120.30
124.07
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
31
31
31
N
1
A
PRO
5
-53.81
171.32
1
A
ASP
10
63.50
83.17
1
A
ASN
18
69.80
-84.55
1
A
LYS
19
-146.79
59.20
1
A
ASP
33
-113.25
65.29
2
A
PRO
5
-56.12
176.20
2
A
ASP
10
53.15
83.56
2
A
ASN
18
74.36
-88.33
2
A
LYS
19
-145.15
43.26
2
A
ASP
33
-106.92
66.02
3
A
PRO
5
-55.55
176.90
3
A
ASP
10
59.92
82.05
3
A
ASN
18
72.23
-83.74
3
A
LYS
19
-143.88
50.86
4
A
PRO
5
-55.84
173.15
4
A
ASP
10
65.43
89.76
4
A
ASN
18
70.27
-89.07
4
A
LYS
19
-153.71
57.51
4
A
ASP
33
-110.56
64.06
5
A
ASP
10
62.29
84.31
5
A
ASN
18
74.58
-89.07
5
A
LYS
19
-144.35
43.60
6
A
PRO
5
-54.62
173.25
6
A
ASP
10
59.63
86.93
6
A
ASN
18
71.76
-91.69
6
A
LYS
19
-144.29
51.07
7
A
ASP
10
67.08
89.32
7
A
ASN
18
70.89
-84.59
7
A
LYS
19
-148.00
56.60
7
A
ASP
33
-106.56
64.48
8
A
ASP
10
62.94
84.88
8
A
ASN
18
72.33
-86.19
8
A
LYS
19
-144.95
51.62
9
A
PRO
5
-56.01
175.22
9
A
ASP
10
65.24
87.65
9
A
ASN
18
74.08
-89.64
9
A
LYS
19
-142.98
45.45
9
A
ASP
33
-107.84
64.67
10
A
PRO
5
-55.52
175.36
10
A
ASP
10
58.24
83.43
10
A
ASN
18
74.03
-81.16
11
A
PRO
5
-56.80
174.13
11
A
ASP
10
61.47
83.34
11
A
ASN
18
71.44
-84.77
12
A
ASP
10
62.72
84.45
12
A
ASN
18
72.25
-83.42
12
A
LYS
19
-143.17
49.80
13
A
PRO
5
-55.17
176.75
13
A
ASP
10
58.97
84.60
13
A
ASN
18
71.53
-84.19
13
A
ASP
33
-108.98
66.33
14
A
PRO
5
-56.09
174.38
14
A
ASP
10
61.88
84.04
14
A
ASN
18
72.56
-83.55
15
A
PRO
5
-57.48
178.62
15
A
ASP
10
51.76
82.42
15
A
ASN
18
74.72
-87.85
15
A
LYS
19
-146.20
44.14
16
A
PRO
5
-55.63
173.87
16
A
ASP
10
59.66
84.52
16
A
ASN
18
69.91
-85.76
16
A
LYS
19
-146.64
56.06
16
A
ASP
33
-108.02
65.35
17
A
PRO
5
-56.21
172.85
17
A
ASP
10
63.11
84.56
17
A
ASN
18
73.64
-90.84
17
A
LYS
19
-146.35
45.79
18
A
PRO
5
-54.47
171.99
18
A
ASP
10
60.33
82.78
18
A
ASN
18
73.04
-84.85
18
A
LYS
19
-143.64
50.45
19
A
ASP
10
61.54
84.93
19
A
ASN
18
73.76
-88.54
19
A
LYS
19
-144.71
47.64
19
A
ASP
33
-108.80
66.10
20
A
ASP
10
66.52
88.57
20
A
ASN
18
70.82
-82.95
20
A
LYS
19
-150.33
57.20
20
A
ASP
33
-107.59
64.64
21
A
PRO
5
-55.74
174.38
21
A
ASP
10
62.67
86.74
21
A
ASN
18
72.75
-85.93
21
A
ASP
33
-109.41
65.92
22
A
PRO
5
-55.75
172.80
22
A
ASP
10
62.42
83.55
22
A
ASN
18
73.45
-82.59
23
A
ASP
10
62.35
88.97
23
A
ASN
18
73.54
-92.22
23
A
LYS
19
-144.48
50.67
24
A
PRO
5
-54.57
171.85
24
A
ASP
10
65.37
90.14
24
A
ASN
18
74.17
-89.76
24
A
LYS
19
-143.57
46.59
25
A
PRO
5
-54.69
172.18
25
A
ASP
10
62.32
87.33
25
A
ASN
18
69.90
-85.38
25
A
LYS
19
-145.90
57.67
DECORSIN (NMR, 25 STRUCTURES)
STRUCTURE OF THE RGD PROTEIN DECORSIN: CONSERVED MOTIF AND DISTINCT FUNCTION IN LEECH PROTEINS THAT AFFECT BLOOD CLOTTING
1
Y
N
disulf
1.996
A
CYS
7
A
SG
CYS
7
1_555
A
CYS
15
A
SG
CYS
15
1_555
disulf
1.995
A
CYS
17
A
SG
CYS
17
1_555
A
CYS
27
A
SG
CYS
27
1_555
disulf
1.992
A
CYS
22
A
SG
CYS
22
1_555
A
CYS
38
A
SG
CYS
38
1_555
BLOOD COAGULATION
BLOOD COAGULATION
DECO_MACDE
UNP
1
1
P17350
APRLPQCQGDDQEKCLCNKDECPPGQCRFPRGDADPYCE
1
39
1DEC
1
39
P17350
A
1
1
39
3
2
parallel
anti-parallel
anti-parallel
A
PRO
5
A
PRO
5
A
CYS
7
A
CYS
7
A
CYS
15
A
CYS
15
A
CYS
17
A
CYS
17
A
ASP
20
A
ASP
20
A
CYS
22
A
CYS
22
A
GLN
26
A
GLN
26
A
PHE
29
A
PHE
29
A
PRO
36
A
PRO
36
A
GLU
39
A
GLU
39
ARG-GLY-ASP RECOGNITION SITE COMPRISES RESIDUES 31 - 33
Author
3
A
ARG
31
A
ARG
31
3
1_555
A
GLY
32
A
GLY
32
3
1_555
A
ASP
33
A
ASP
33
3
1_555
1
P 1