1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Krezel, A.M. Wagner, G. Seymour-Ulmer, J. Lazarus, R.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking US Science SCIEAS 0038 0036-8075 264 1944 1947 8009227 Structure of the RGD protein decorsin: conserved motif and distinct function in leech proteins that affect blood clotting. 1994 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4388.874 DECORSIN 1 man polymer no no APRLPQCQGDDQEKCLCNKDECPPGQCRFPRGDADPYCE APRLPQCQGDDQEKCLCNKDECPPGQCRFPRGDADPYCE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n North American leech Macrobdella sample 6405 BLOOD Macrobdella decora pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conf repository Initial release Version format compliance Version format compliance Derived calculations Other 1 0 1994-08-31 1 1 2008-03-03 1 2 2011-07-13 1 3 2017-11-29 _pdbx_database_status.process_site Y BNL 1994-05-17 REL REL 25 ALA 1 n 1 ALA 1 A PRO 2 n 2 PRO 2 A ARG 3 n 3 ARG 3 A LEU 4 n 4 LEU 4 A PRO 5 n 5 PRO 5 A GLN 6 n 6 GLN 6 A CYS 7 n 7 CYS 7 A GLN 8 n 8 GLN 8 A GLY 9 n 9 GLY 9 A ASP 10 n 10 ASP 10 A ASP 11 n 11 ASP 11 A GLN 12 n 12 GLN 12 A GLU 13 n 13 GLU 13 A LYS 14 n 14 LYS 14 A CYS 15 n 15 CYS 15 A LEU 16 n 16 LEU 16 A CYS 17 n 17 CYS 17 A ASN 18 n 18 ASN 18 A LYS 19 n 19 LYS 19 A ASP 20 n 20 ASP 20 A GLU 21 n 21 GLU 21 A CYS 22 n 22 CYS 22 A PRO 23 n 23 PRO 23 A PRO 24 n 24 PRO 24 A GLY 25 n 25 GLY 25 A GLN 26 n 26 GLN 26 A CYS 27 n 27 CYS 27 A ARG 28 n 28 ARG 28 A PHE 29 n 29 PHE 29 A PRO 30 n 30 PRO 30 A ARG 31 n 31 ARG 31 A GLY 32 n 32 GLY 32 A ASP 33 n 33 ASP 33 A ALA 34 n 34 ALA 34 A ASP 35 n 35 ASP 35 A PRO 36 n 36 PRO 36 A TYR 37 n 37 TYR 37 A CYS 38 n 38 CYS 38 A GLU 39 n 39 GLU 39 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 7 A N CYS 7 A O LEU 16 A O LEU 16 A O CYS 15 A O CYS 15 A N CYS 22 A N CYS 22 A N ARG 28 A N ARG 28 A O TYR 37 A O TYR 37 1 3.74 0.50 120.30 124.04 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 1 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 1 3.68 0.50 120.30 123.98 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 2 3.73 0.50 120.30 124.03 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 2 3.68 0.50 120.30 123.98 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 2 3.74 0.50 120.30 124.04 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 3 3.71 0.50 120.30 124.01 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 3 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 3 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 4 3.87 0.50 120.30 124.17 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 4 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 4 3.65 0.50 120.30 123.95 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 5 3.81 0.50 120.30 124.11 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 5 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 5 3.77 0.50 120.30 124.07 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 6 3.68 0.50 120.30 123.98 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 6 3.56 0.50 120.30 123.86 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 6 4.00 0.50 120.30 124.30 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 7 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 7 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 7 3.95 0.50 120.30 124.25 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 8 3.77 0.50 120.30 124.07 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 8 3.63 0.50 120.30 123.93 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 8 3.79 0.50 120.30 124.09 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 9 3.71 0.50 120.30 124.01 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 9 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 9 3.73 0.50 120.30 124.03 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 10 3.81 0.50 120.30 124.11 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 10 3.67 0.50 120.30 123.97 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 10 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 11 3.84 0.50 120.30 124.14 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 11 3.68 0.50 120.30 123.98 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 11 3.72 0.50 120.30 124.02 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 12 3.80 0.50 120.30 124.10 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 12 3.60 0.50 120.30 123.90 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 12 3.88 0.50 120.30 124.18 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 13 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 13 3.74 0.50 120.30 124.04 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 13 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 14 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 14 3.69 0.50 120.30 123.99 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 14 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 15 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 15 3.69 0.50 120.30 123.99 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 15 3.77 0.50 120.30 124.07 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 16 3.85 0.50 120.30 124.15 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 16 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 16 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 17 3.71 0.50 120.30 124.01 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 17 3.65 0.50 120.30 123.95 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 17 3.81 0.50 120.30 124.11 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 18 3.82 0.50 120.30 124.12 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 18 3.67 0.50 120.30 123.97 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 18 3.80 0.50 120.30 124.10 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 19 3.94 0.50 120.30 124.24 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 19 3.68 0.50 120.30 123.98 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 19 3.77 0.50 120.30 124.07 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 20 3.75 0.50 120.30 124.05 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 20 3.64 0.50 120.30 123.94 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 20 3.72 0.50 120.30 124.02 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 21 3.88 0.50 120.30 124.18 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 21 3.75 0.50 120.30 124.05 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 21 3.71 0.50 120.30 124.01 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 22 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 22 3.72 0.50 120.30 124.02 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 22 3.74 0.50 120.30 124.04 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 23 3.70 0.50 120.30 124.00 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 23 3.59 0.50 120.30 123.89 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 23 3.76 0.50 120.30 124.06 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 24 3.85 0.50 120.30 124.15 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 24 3.66 0.50 120.30 123.96 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 24 3.68 0.50 120.30 123.98 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 25 3.71 0.50 120.30 124.01 A A A NE CZ NH1 ARG ARG ARG 3 3 3 N 25 3.67 0.50 120.30 123.97 A A A NE CZ NH1 ARG ARG ARG 28 28 28 N 25 3.77 0.50 120.30 124.07 A A A NE CZ NH1 ARG ARG ARG 31 31 31 N 1 A PRO 5 -53.81 171.32 1 A ASP 10 63.50 83.17 1 A ASN 18 69.80 -84.55 1 A LYS 19 -146.79 59.20 1 A ASP 33 -113.25 65.29 2 A PRO 5 -56.12 176.20 2 A ASP 10 53.15 83.56 2 A ASN 18 74.36 -88.33 2 A LYS 19 -145.15 43.26 2 A ASP 33 -106.92 66.02 3 A PRO 5 -55.55 176.90 3 A ASP 10 59.92 82.05 3 A ASN 18 72.23 -83.74 3 A LYS 19 -143.88 50.86 4 A PRO 5 -55.84 173.15 4 A ASP 10 65.43 89.76 4 A ASN 18 70.27 -89.07 4 A LYS 19 -153.71 57.51 4 A ASP 33 -110.56 64.06 5 A ASP 10 62.29 84.31 5 A ASN 18 74.58 -89.07 5 A LYS 19 -144.35 43.60 6 A PRO 5 -54.62 173.25 6 A ASP 10 59.63 86.93 6 A ASN 18 71.76 -91.69 6 A LYS 19 -144.29 51.07 7 A ASP 10 67.08 89.32 7 A ASN 18 70.89 -84.59 7 A LYS 19 -148.00 56.60 7 A ASP 33 -106.56 64.48 8 A ASP 10 62.94 84.88 8 A ASN 18 72.33 -86.19 8 A LYS 19 -144.95 51.62 9 A PRO 5 -56.01 175.22 9 A ASP 10 65.24 87.65 9 A ASN 18 74.08 -89.64 9 A LYS 19 -142.98 45.45 9 A ASP 33 -107.84 64.67 10 A PRO 5 -55.52 175.36 10 A ASP 10 58.24 83.43 10 A ASN 18 74.03 -81.16 11 A PRO 5 -56.80 174.13 11 A ASP 10 61.47 83.34 11 A ASN 18 71.44 -84.77 12 A ASP 10 62.72 84.45 12 A ASN 18 72.25 -83.42 12 A LYS 19 -143.17 49.80 13 A PRO 5 -55.17 176.75 13 A ASP 10 58.97 84.60 13 A ASN 18 71.53 -84.19 13 A ASP 33 -108.98 66.33 14 A PRO 5 -56.09 174.38 14 A ASP 10 61.88 84.04 14 A ASN 18 72.56 -83.55 15 A PRO 5 -57.48 178.62 15 A ASP 10 51.76 82.42 15 A ASN 18 74.72 -87.85 15 A LYS 19 -146.20 44.14 16 A PRO 5 -55.63 173.87 16 A ASP 10 59.66 84.52 16 A ASN 18 69.91 -85.76 16 A LYS 19 -146.64 56.06 16 A ASP 33 -108.02 65.35 17 A PRO 5 -56.21 172.85 17 A ASP 10 63.11 84.56 17 A ASN 18 73.64 -90.84 17 A LYS 19 -146.35 45.79 18 A PRO 5 -54.47 171.99 18 A ASP 10 60.33 82.78 18 A ASN 18 73.04 -84.85 18 A LYS 19 -143.64 50.45 19 A ASP 10 61.54 84.93 19 A ASN 18 73.76 -88.54 19 A LYS 19 -144.71 47.64 19 A ASP 33 -108.80 66.10 20 A ASP 10 66.52 88.57 20 A ASN 18 70.82 -82.95 20 A LYS 19 -150.33 57.20 20 A ASP 33 -107.59 64.64 21 A PRO 5 -55.74 174.38 21 A ASP 10 62.67 86.74 21 A ASN 18 72.75 -85.93 21 A ASP 33 -109.41 65.92 22 A PRO 5 -55.75 172.80 22 A ASP 10 62.42 83.55 22 A ASN 18 73.45 -82.59 23 A ASP 10 62.35 88.97 23 A ASN 18 73.54 -92.22 23 A LYS 19 -144.48 50.67 24 A PRO 5 -54.57 171.85 24 A ASP 10 65.37 90.14 24 A ASN 18 74.17 -89.76 24 A LYS 19 -143.57 46.59 25 A PRO 5 -54.69 172.18 25 A ASP 10 62.32 87.33 25 A ASN 18 69.90 -85.38 25 A LYS 19 -145.90 57.67 DECORSIN (NMR, 25 STRUCTURES) STRUCTURE OF THE RGD PROTEIN DECORSIN: CONSERVED MOTIF AND DISTINCT FUNCTION IN LEECH PROTEINS THAT AFFECT BLOOD CLOTTING 1 Y N disulf 1.996 A CYS 7 A SG CYS 7 1_555 A CYS 15 A SG CYS 15 1_555 disulf 1.995 A CYS 17 A SG CYS 17 1_555 A CYS 27 A SG CYS 27 1_555 disulf 1.992 A CYS 22 A SG CYS 22 1_555 A CYS 38 A SG CYS 38 1_555 BLOOD COAGULATION BLOOD COAGULATION DECO_MACDE UNP 1 1 P17350 APRLPQCQGDDQEKCLCNKDECPPGQCRFPRGDADPYCE 1 39 1DEC 1 39 P17350 A 1 1 39 3 2 parallel anti-parallel anti-parallel A PRO 5 A PRO 5 A CYS 7 A CYS 7 A CYS 15 A CYS 15 A CYS 17 A CYS 17 A ASP 20 A ASP 20 A CYS 22 A CYS 22 A GLN 26 A GLN 26 A PHE 29 A PHE 29 A PRO 36 A PRO 36 A GLU 39 A GLU 39 ARG-GLY-ASP RECOGNITION SITE COMPRISES RESIDUES 31 - 33 Author 3 A ARG 31 A ARG 31 3 1_555 A GLY 32 A GLY 32 3 1_555 A ASP 33 A ASP 33 3 1_555 1 P 1