0.006443
0.000000
0.002106
0.000000
0.017094
0.000000
0.000000
0.000000
0.013898
0.00000
0.00000
0.00000
Teplyakov, A.
Sebastiao, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
108.10
90.00
155.200
58.500
75.700
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O7 P
347.221
n
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
P
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
O
N
130
N
C
N
131
R
C
N
132
N
O
N
133
S
C
N
134
N
O
N
135
N
C
N
136
R
C
Y
137
N
N
Y
138
N
C
Y
139
N
N
Y
140
N
C
N
141
N
C
N
142
N
O
N
143
N
N
N
144
N
C
N
145
N
N
N
146
N
N
Y
147
N
C
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
N
N
171
N
O
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
S
C
N
184
N
C
N
185
N
O
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
O
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
N
N
202
N
C
N
203
N
C
N
204
N
O
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
Y
216
N
C
Y
217
N
N
Y
218
N
C
Y
219
N
C
Y
220
N
N
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
O
N
233
N
H
N
234
N
H
N
235
N
N
N
236
S
C
N
237
N
C
N
238
N
O
N
239
S
C
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
O
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
N
N
258
S
C
N
259
N
C
N
260
N
O
N
261
N
C
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
C
N
287
N
N
N
288
N
O
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
N
309
N
C
N
310
N
S
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
MG
N
325
N
N
N
326
S
C
N
327
N
C
N
328
N
O
N
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
N
370
N
O
N
371
N
O
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
R
C
N
384
N
O
N
385
N
C
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
N
N
397
S
C
N
398
N
C
N
399
N
O
N
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
N
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
Y
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
N
N
424
S
C
N
425
N
C
N
426
N
O
N
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
N
434
N
O
N
435
N
O
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
N
N
448
S
C
N
449
N
C
N
450
N
O
N
451
N
C
N
452
N
C
N
453
N
C
N
454
N
O
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
Y
145
N
sing
Y
146
N
sing
Y
147
N
doub
N
148
N
sing
Y
149
N
sing
N
150
N
sing
Y
151
N
doub
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
doub
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
doub
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
doub
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
Y
218
N
sing
Y
219
N
doub
Y
220
N
doub
N
221
N
sing
Y
222
N
sing
N
223
N
sing
Y
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
doub
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
Y
326
N
doub
Y
327
N
sing
Y
328
N
sing
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
doub
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
Y
400
N
sing
Y
401
N
sing
N
402
N
sing
Y
403
N
sing
Y
404
N
doub
N
405
N
sing
Y
406
N
doub
N
407
N
sing
Y
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
doub
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
Y
423
N
doub
Y
424
N
sing
Y
425
N
sing
N
426
N
sing
Y
427
N
doub
N
428
N
sing
Y
429
N
doub
N
430
N
sing
Y
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
doub
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
UK
EMBO J.
EMJODG
0897
0261-4189
15
3487
3497
8670851
Crystal structure of bacteriophage T4 deoxynucleotide kinase with its substrates dGMP and ATP.
1996
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
52
226
Crystallization and Preliminary X-Ray Analysis of Bacteriophage T4 Deoxynucleotide Kinase
1996
10.2210/pdb1del/pdb
pdb_00001del
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
277
1
TOROIDAL MIRROR
IMAGE PLATE
1995-04-01
MAR scanner 180 mm plate
SI(111)
M
x-ray
1
0.92
1.0
X11
EMBL/DESY, HAMBURG
0.92
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
27359.111
DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE
2.7.4.13
2
man
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
347.221
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
2
syn
non-polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
18.015
water
222
nat
water
no
no
MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRETNLNLTKLEVI
TIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDY
LDKFNSGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQKSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKV
L
MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRETNLNLTKLEVI
TIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDY
LDKFNSGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQKSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKV
L
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
T4-like viruses
Enterobacteria phage T4 sensu lato
Escherichia
sample
1
10665
Enterobacteria phage T4
1
562
Escherichia coli
PBK5
2.98
59.
6.5
pH 6.5
chem_comp
chem_comp_atom
chem_comp_bond
database_2
diffrn_source
pdbx_database_status
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Data collection
Database references
Derived calculations
Other
1
0
1997-01-11
1
1
2008-03-24
1
2
2011-07-13
1
3
2024-02-07
_chem_comp.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_diffrn_source.pdbx_synchrotron_site
_pdbx_database_status.process_site
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-01-09
REL
REL
MG
MAGNESIUM ION
DGP
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
AMP
ADENOSINE MONOPHOSPHATE
HOH
water
MG
300
2
MG
MG
300
A
DGP
301
3
DGP
DGP
301
A
MG
300
2
MG
MG
300
B
DGP
301
3
DGP
DGP
301
B
AMP
302
4
AMP
AMP
302
B
HOH
2
5
HOH
HOH
302
A
HOH
5
5
HOH
HOH
303
A
HOH
8
5
HOH
HOH
304
A
HOH
9
5
HOH
HOH
305
A
HOH
10
5
HOH
HOH
306
A
HOH
11
5
HOH
HOH
307
A
HOH
12
5
HOH
HOH
308
A
HOH
13
5
HOH
HOH
309
A
HOH
14
5
HOH
HOH
310
A
HOH
17
5
HOH
HOH
311
A
HOH
22
5
HOH
HOH
312
A
HOH
23
5
HOH
HOH
313
A
HOH
24
5
HOH
HOH
314
A
HOH
25
5
HOH
HOH
315
A
HOH
27
5
HOH
HOH
316
A
HOH
29
5
HOH
HOH
317
A
HOH
30
5
HOH
HOH
318
A
HOH
31
5
HOH
HOH
319
A
HOH
33
5
HOH
HOH
320
A
HOH
35
5
HOH
HOH
321
A
HOH
36
5
HOH
HOH
322
A
HOH
38
5
HOH
HOH
323
A
HOH
39
5
HOH
HOH
324
A
HOH
42
5
HOH
HOH
325
A
HOH
43
5
HOH
HOH
326
A
HOH
47
5
HOH
HOH
327
A
HOH
50
5
HOH
HOH
328
A
HOH
51
5
HOH
HOH
329
A
HOH
54
5
HOH
HOH
330
A
HOH
56
5
HOH
HOH
331
A
HOH
59
5
HOH
HOH
332
A
HOH
60
5
HOH
HOH
333
A
HOH
61
5
HOH
HOH
334
A
HOH
63
5
HOH
HOH
335
A
HOH
64
5
HOH
HOH
336
A
HOH
67
5
HOH
HOH
337
A
HOH
70
5
HOH
HOH
338
A
HOH
71
5
HOH
HOH
339
A
HOH
73
5
HOH
HOH
340
A
HOH
75
5
HOH
HOH
341
A
HOH
78
5
HOH
HOH
342
A
HOH
79
5
HOH
HOH
343
A
HOH
80
5
HOH
HOH
344
A
HOH
81
5
HOH
HOH
345
A
HOH
84
5
HOH
HOH
346
A
HOH
85
5
HOH
HOH
347
A
HOH
86
5
HOH
HOH
348
A
HOH
87
5
HOH
HOH
349
A
HOH
88
5
HOH
HOH
350
A
HOH
91
5
HOH
HOH
351
A
HOH
92
5
HOH
HOH
352
A
HOH
93
5
HOH
HOH
353
A
HOH
94
5
HOH
HOH
354
A
HOH
98
5
HOH
HOH
355
A
HOH
99
5
HOH
HOH
356
A
HOH
100
5
HOH
HOH
357
A
HOH
101
5
HOH
HOH
358
A
HOH
102
5
HOH
HOH
359
A
HOH
103
5
HOH
HOH
360
A
HOH
107
5
HOH
HOH
361
A
HOH
108
5
HOH
HOH
362
A
HOH
111
5
HOH
HOH
363
A
HOH
113
5
HOH
HOH
364
A
HOH
114
5
HOH
HOH
365
A
HOH
116
5
HOH
HOH
366
A
HOH
118
5
HOH
HOH
367
A
HOH
119
5
HOH
HOH
368
A
HOH
121
5
HOH
HOH
369
A
HOH
122
5
HOH
HOH
370
A
HOH
124
5
HOH
HOH
371
A
HOH
126
5
HOH
HOH
372
A
HOH
127
5
HOH
HOH
373
A
HOH
128
5
HOH
HOH
374
A
HOH
129
5
HOH
HOH
375
A
HOH
130
5
HOH
HOH
376
A
HOH
133
5
HOH
HOH
377
A
HOH
136
5
HOH
HOH
378
A
HOH
137
5
HOH
HOH
379
A
HOH
138
5
HOH
HOH
380
A
HOH
140
5
HOH
HOH
381
A
HOH
141
5
HOH
HOH
382
A
HOH
142
5
HOH
HOH
383
A
HOH
143
5
HOH
HOH
384
A
HOH
144
5
HOH
HOH
385
A
HOH
147
5
HOH
HOH
386
A
HOH
149
5
HOH
HOH
387
A
HOH
151
5
HOH
HOH
388
A
HOH
152
5
HOH
HOH
389
A
HOH
153
5
HOH
HOH
390
A
HOH
156
5
HOH
HOH
391
A
HOH
158
5
HOH
HOH
392
A
HOH
159
5
HOH
HOH
393
A
HOH
160
5
HOH
HOH
394
A
HOH
162
5
HOH
HOH
395
A
HOH
164
5
HOH
HOH
396
A
HOH
167
5
HOH
HOH
397
A
HOH
173
5
HOH
HOH
398
A
HOH
174
5
HOH
HOH
399
A
HOH
175
5
HOH
HOH
400
A
HOH
176
5
HOH
HOH
401
A
HOH
179
5
HOH
HOH
402
A
HOH
180
5
HOH
HOH
403
A
HOH
182
5
HOH
HOH
404
A
HOH
184
5
HOH
HOH
405
A
HOH
185
5
HOH
HOH
406
A
HOH
186
5
HOH
HOH
407
A
HOH
187
5
HOH
HOH
408
A
HOH
190
5
HOH
HOH
409
A
HOH
193
5
HOH
HOH
410
A
HOH
195
5
HOH
HOH
411
A
HOH
196
5
HOH
HOH
412
A
HOH
197
5
HOH
HOH
413
A
HOH
199
5
HOH
HOH
414
A
HOH
200
5
HOH
HOH
415
A
HOH
201
5
HOH
HOH
416
A
HOH
205
5
HOH
HOH
417
A
HOH
206
5
HOH
HOH
418
A
HOH
207
5
HOH
HOH
419
A
HOH
214
5
HOH
HOH
420
A
HOH
217
5
HOH
HOH
421
A
HOH
218
5
HOH
HOH
422
A
HOH
219
5
HOH
HOH
423
A
HOH
221
5
HOH
HOH
424
A
HOH
222
5
HOH
HOH
425
A
HOH
1
5
HOH
HOH
303
B
HOH
3
5
HOH
HOH
304
B
HOH
4
5
HOH
HOH
305
B
HOH
6
5
HOH
HOH
306
B
HOH
7
5
HOH
HOH
307
B
HOH
15
5
HOH
HOH
308
B
HOH
16
5
HOH
HOH
309
B
HOH
18
5
HOH
HOH
310
B
HOH
19
5
HOH
HOH
311
B
HOH
20
5
HOH
HOH
312
B
HOH
21
5
HOH
HOH
313
B
HOH
26
5
HOH
HOH
314
B
HOH
28
5
HOH
HOH
315
B
HOH
32
5
HOH
HOH
316
B
HOH
34
5
HOH
HOH
317
B
HOH
37
5
HOH
HOH
318
B
HOH
40
5
HOH
HOH
319
B
HOH
41
5
HOH
HOH
320
B
HOH
44
5
HOH
HOH
321
B
HOH
45
5
HOH
HOH
322
B
HOH
46
5
HOH
HOH
323
B
HOH
48
5
HOH
HOH
324
B
HOH
49
5
HOH
HOH
325
B
HOH
52
5
HOH
HOH
326
B
HOH
53
5
HOH
HOH
327
B
HOH
55
5
HOH
HOH
328
B
HOH
57
5
HOH
HOH
329
B
HOH
58
5
HOH
HOH
330
B
HOH
62
5
HOH
HOH
331
B
HOH
65
5
HOH
HOH
332
B
HOH
66
5
HOH
HOH
333
B
HOH
68
5
HOH
HOH
334
B
HOH
69
5
HOH
HOH
335
B
HOH
72
5
HOH
HOH
336
B
HOH
74
5
HOH
HOH
337
B
HOH
76
5
HOH
HOH
338
B
HOH
77
5
HOH
HOH
339
B
HOH
82
5
HOH
HOH
340
B
HOH
83
5
HOH
HOH
341
B
HOH
89
5
HOH
HOH
342
B
HOH
90
5
HOH
HOH
343
B
HOH
95
5
HOH
HOH
344
B
HOH
96
5
HOH
HOH
345
B
HOH
97
5
HOH
HOH
346
B
HOH
104
5
HOH
HOH
347
B
HOH
105
5
HOH
HOH
348
B
HOH
106
5
HOH
HOH
349
B
HOH
109
5
HOH
HOH
350
B
HOH
110
5
HOH
HOH
351
B
HOH
112
5
HOH
HOH
352
B
HOH
115
5
HOH
HOH
353
B
HOH
117
5
HOH
HOH
354
B
HOH
120
5
HOH
HOH
355
B
HOH
123
5
HOH
HOH
356
B
HOH
125
5
HOH
HOH
357
B
HOH
131
5
HOH
HOH
358
B
HOH
132
5
HOH
HOH
359
B
HOH
134
5
HOH
HOH
360
B
HOH
135
5
HOH
HOH
361
B
HOH
139
5
HOH
HOH
362
B
HOH
145
5
HOH
HOH
363
B
HOH
146
5
HOH
HOH
364
B
HOH
148
5
HOH
HOH
365
B
HOH
150
5
HOH
HOH
366
B
HOH
154
5
HOH
HOH
367
B
HOH
155
5
HOH
HOH
368
B
HOH
157
5
HOH
HOH
369
B
HOH
161
5
HOH
HOH
370
B
HOH
163
5
HOH
HOH
371
B
HOH
165
5
HOH
HOH
372
B
HOH
166
5
HOH
HOH
373
B
HOH
168
5
HOH
HOH
374
B
HOH
169
5
HOH
HOH
375
B
HOH
170
5
HOH
HOH
376
B
HOH
171
5
HOH
HOH
377
B
HOH
172
5
HOH
HOH
378
B
HOH
177
5
HOH
HOH
379
B
HOH
178
5
HOH
HOH
380
B
HOH
181
5
HOH
HOH
381
B
HOH
183
5
HOH
HOH
382
B
HOH
188
5
HOH
HOH
383
B
HOH
189
5
HOH
HOH
384
B
HOH
191
5
HOH
HOH
385
B
HOH
192
5
HOH
HOH
386
B
HOH
194
5
HOH
HOH
387
B
HOH
198
5
HOH
HOH
388
B
HOH
202
5
HOH
HOH
389
B
HOH
203
5
HOH
HOH
390
B
HOH
204
5
HOH
HOH
391
B
HOH
208
5
HOH
HOH
392
B
HOH
209
5
HOH
HOH
393
B
HOH
210
5
HOH
HOH
394
B
HOH
211
5
HOH
HOH
395
B
HOH
212
5
HOH
HOH
396
B
HOH
213
5
HOH
HOH
397
B
HOH
215
5
HOH
HOH
398
B
HOH
216
5
HOH
HOH
399
B
HOH
220
5
HOH
HOH
400
B
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LEU
3
n
3
LEU
3
A
ILE
4
n
4
ILE
4
A
PHE
5
n
5
PHE
5
A
LEU
6
n
6
LEU
6
A
SER
7
n
7
SER
7
A
GLY
8
n
8
GLY
8
A
VAL
9
n
9
VAL
9
A
LYS
10
n
10
LYS
10
A
ARG
11
n
11
ARG
11
A
SER
12
n
12
SER
12
A
GLY
13
n
13
GLY
13
A
LYS
14
n
14
LYS
14
A
ASP
15
n
15
ASP
15
A
THR
16
n
16
THR
16
A
THR
17
n
17
THR
17
A
ALA
18
n
18
ALA
18
A
ASP
19
n
19
ASP
19
A
PHE
20
n
20
PHE
20
A
ILE
21
n
21
ILE
21
A
MET
22
n
22
MET
22
A
SER
23
n
23
SER
23
A
ASN
24
n
24
ASN
24
A
TYR
25
n
25
TYR
25
A
SER
26
n
26
SER
26
A
ALA
27
n
27
ALA
27
A
VAL
28
n
28
VAL
28
A
LYS
29
n
29
LYS
29
A
TYR
30
n
30
TYR
30
A
GLN
31
n
31
GLN
31
A
LEU
32
n
32
LEU
32
A
ALA
33
n
33
ALA
33
A
GLY
34
n
34
GLY
34
A
PRO
35
n
35
PRO
35
A
ILE
36
n
36
ILE
36
A
LYS
37
n
37
LYS
37
A
ASP
38
n
38
ASP
38
A
ALA
39
n
39
ALA
39
A
LEU
40
n
40
LEU
40
A
ALA
41
n
41
ALA
41
A
TYR
42
n
42
TYR
42
A
ALA
43
n
43
ALA
43
A
TRP
44
n
44
TRP
44
A
GLY
45
n
45
GLY
45
A
VAL
46
n
46
VAL
46
A
PHE
47
n
47
PHE
47
A
ALA
48
n
48
ALA
48
A
ALA
49
n
49
ALA
49
A
ASN
50
n
50
ASN
50
A
THR
51
n
51
THR
51
A
ASP
52
n
52
ASP
52
A
TYR
53
n
53
TYR
53
A
PRO
54
n
54
PRO
54
A
CYS
55
n
55
CYS
55
A
LEU
56
n
56
LEU
56
A
THR
57
n
57
THR
57
A
ARG
58
n
58
ARG
58
A
LYS
59
n
59
LYS
59
A
GLU
60
n
60
GLU
60
A
PHE
61
n
61
PHE
61
A
GLU
62
n
62
GLU
62
A
GLY
63
n
63
GLY
63
A
ILE
64
n
64
ILE
64
A
ASP
65
n
65
ASP
65
A
TYR
66
n
66
TYR
66
A
ASP
67
n
67
ASP
67
A
ARG
68
n
68
ARG
68
A
GLU
69
n
69
GLU
69
A
THR
70
n
70
THR
70
A
ASN
71
n
71
ASN
71
A
LEU
72
n
72
LEU
72
A
ASN
73
n
73
ASN
73
A
LEU
74
n
74
LEU
74
A
THR
75
n
75
THR
75
A
LYS
76
n
76
LYS
76
A
LEU
77
n
77
LEU
77
A
GLU
78
n
78
GLU
78
A
VAL
79
n
79
VAL
79
A
ILE
80
n
80
ILE
80
A
THR
81
n
81
THR
81
A
ILE
82
n
82
ILE
82
A
MET
83
n
83
MET
83
A
GLU
84
n
84
GLU
84
A
GLN
85
n
85
GLN
85
A
ALA
86
n
86
ALA
86
A
PHE
87
n
87
PHE
87
A
CYS
88
n
88
CYS
88
A
TYR
89
n
89
TYR
89
A
LEU
90
n
90
LEU
90
A
ASN
91
n
91
ASN
91
A
GLY
92
n
92
GLY
92
A
LYS
93
n
93
LYS
93
A
SER
94
n
94
SER
94
A
PRO
95
n
95
PRO
95
A
ILE
96
n
96
ILE
96
A
LYS
97
n
97
LYS
97
A
GLY
98
n
98
GLY
98
A
VAL
99
n
99
VAL
99
A
PHE
100
n
100
PHE
100
A
VAL
101
n
101
VAL
101
A
PHE
102
n
102
PHE
102
A
ASP
103
n
103
ASP
103
A
ASP
104
n
104
ASP
104
A
GLU
105
n
105
GLU
105
A
GLY
106
n
106
GLY
106
A
LYS
107
n
107
LYS
107
A
GLU
108
n
108
GLU
108
A
SER
109
n
109
SER
109
A
VAL
110
n
110
VAL
110
A
ASN
111
n
111
ASN
111
A
PHE
112
n
112
PHE
112
A
VAL
113
n
113
VAL
113
A
ALA
114
n
114
ALA
114
A
PHE
115
n
115
PHE
115
A
ASN
116
n
116
ASN
116
A
LYS
117
n
117
LYS
117
A
ILE
118
n
118
ILE
118
A
THR
119
n
119
THR
119
A
ASP
120
n
120
ASP
120
A
VAL
121
n
121
VAL
121
A
ILE
122
n
122
ILE
122
A
ASN
123
n
123
ASN
123
A
ASN
124
n
124
ASN
124
A
ILE
125
n
125
ILE
125
A
GLU
126
n
126
GLU
126
A
ASP
127
n
127
ASP
127
A
GLN
128
n
128
GLN
128
A
TRP
129
n
129
TRP
129
A
SER
130
n
130
SER
130
A
VAL
131
n
131
VAL
131
A
ARG
132
n
132
ARG
132
A
ARG
133
n
133
ARG
133
A
LEU
134
n
134
LEU
134
A
MET
135
n
135
MET
135
A
GLN
136
n
136
GLN
136
A
ALA
137
n
137
ALA
137
A
LEU
138
n
138
LEU
138
A
GLY
139
n
139
GLY
139
A
THR
140
n
140
THR
140
A
ASP
141
n
141
ASP
141
A
LEU
142
n
142
LEU
142
A
ILE
143
n
143
ILE
143
A
VAL
144
n
144
VAL
144
A
ASN
145
n
145
ASN
145
A
ASN
146
n
146
ASN
146
A
PHE
147
n
147
PHE
147
A
ASP
148
n
148
ASP
148
A
ARG
149
n
149
ARG
149
A
MET
150
n
150
MET
150
A
TYR
151
n
151
TYR
151
A
TRP
152
n
152
TRP
152
A
VAL
153
n
153
VAL
153
A
LYS
154
n
154
LYS
154
A
LEU
155
n
155
LEU
155
A
PHE
156
n
156
PHE
156
A
ALA
157
n
157
ALA
157
A
LEU
158
n
158
LEU
158
A
ASP
159
n
159
ASP
159
A
TYR
160
n
160
TYR
160
A
LEU
161
n
161
LEU
161
A
ASP
162
n
162
ASP
162
A
LYS
163
n
163
LYS
163
A
PHE
164
n
164
PHE
164
A
ASN
165
n
165
ASN
165
A
SER
166
n
166
SER
166
A
GLY
167
n
167
GLY
167
A
TYR
168
n
168
TYR
168
A
ASP
169
n
169
ASP
169
A
TYR
170
n
170
TYR
170
A
TYR
171
n
171
TYR
171
A
ILE
172
n
172
ILE
172
A
VAL
173
n
173
VAL
173
A
PRO
174
n
174
PRO
174
A
ASP
175
n
175
ASP
175
A
THR
176
n
176
THR
176
A
ARG
177
n
177
ARG
177
A
GLN
178
n
178
GLN
178
A
ASP
179
n
179
ASP
179
A
HIS
180
n
180
HIS
180
A
GLU
181
n
181
GLU
181
A
MET
182
n
182
MET
182
A
ASP
183
n
183
ASP
183
A
ALA
184
n
184
ALA
184
A
ALA
185
n
185
ALA
185
A
ARG
186
n
186
ARG
186
A
ALA
187
n
187
ALA
187
A
MET
188
n
188
MET
188
A
GLY
189
n
189
GLY
189
A
ALA
190
n
190
ALA
190
A
THR
191
n
191
THR
191
A
VAL
192
n
192
VAL
192
A
ILE
193
n
193
ILE
193
A
HIS
194
n
194
HIS
194
A
VAL
195
n
195
VAL
195
A
VAL
196
n
196
VAL
196
A
ARG
197
n
197
ARG
197
A
PRO
198
n
198
PRO
198
A
GLY
199
n
199
GLY
199
A
GLN
200
n
200
GLN
200
A
LYS
201
n
201
LYS
201
A
SER
202
n
202
SER
202
A
ASN
203
n
203
ASN
203
A
ASP
204
n
204
ASP
204
A
THR
205
n
205
THR
205
A
HIS
206
n
206
HIS
206
A
ILE
207
n
207
ILE
207
A
THR
208
n
208
THR
208
A
GLU
209
n
209
GLU
209
A
ALA
210
n
210
ALA
210
A
GLY
211
n
211
GLY
211
A
LEU
212
n
212
LEU
212
A
PRO
213
n
213
PRO
213
A
ILE
214
n
214
ILE
214
A
ARG
215
n
215
ARG
215
A
ASP
216
n
216
ASP
216
A
GLY
217
n
217
GLY
217
A
ASP
218
n
218
ASP
218
A
LEU
219
n
219
LEU
219
A
VAL
220
n
220
VAL
220
A
ILE
221
n
221
ILE
221
A
THR
222
n
222
THR
222
A
ASN
223
n
223
ASN
223
A
ASP
224
n
224
ASP
224
A
GLY
225
n
225
GLY
225
A
SER
226
n
226
SER
226
A
LEU
227
n
227
LEU
227
A
GLU
228
n
228
GLU
228
A
GLU
229
n
229
GLU
229
A
LEU
230
n
230
LEU
230
A
PHE
231
n
231
PHE
231
A
SER
232
n
232
SER
232
A
LYS
233
n
233
LYS
233
A
ILE
234
n
234
ILE
234
A
LYS
235
n
235
LYS
235
A
ASN
236
n
236
ASN
236
A
THR
237
n
237
THR
237
A
LEU
238
n
238
LEU
238
A
LYS
239
n
239
LYS
239
A
VAL
240
n
240
VAL
240
A
LEU
241
n
241
LEU
241
A
MET
1
n
1
MET
1
B
LYS
2
n
2
LYS
2
B
LEU
3
n
3
LEU
3
B
ILE
4
n
4
ILE
4
B
PHE
5
n
5
PHE
5
B
LEU
6
n
6
LEU
6
B
SER
7
n
7
SER
7
B
GLY
8
n
8
GLY
8
B
VAL
9
n
9
VAL
9
B
LYS
10
n
10
LYS
10
B
ARG
11
n
11
ARG
11
B
SER
12
n
12
SER
12
B
GLY
13
n
13
GLY
13
B
LYS
14
n
14
LYS
14
B
ASP
15
n
15
ASP
15
B
THR
16
n
16
THR
16
B
THR
17
n
17
THR
17
B
ALA
18
n
18
ALA
18
B
ASP
19
n
19
ASP
19
B
PHE
20
n
20
PHE
20
B
ILE
21
n
21
ILE
21
B
MET
22
n
22
MET
22
B
SER
23
n
23
SER
23
B
ASN
24
n
24
ASN
24
B
TYR
25
n
25
TYR
25
B
SER
26
n
26
SER
26
B
ALA
27
n
27
ALA
27
B
VAL
28
n
28
VAL
28
B
LYS
29
n
29
LYS
29
B
TYR
30
n
30
TYR
30
B
GLN
31
n
31
GLN
31
B
LEU
32
n
32
LEU
32
B
ALA
33
n
33
ALA
33
B
GLY
34
n
34
GLY
34
B
PRO
35
n
35
PRO
35
B
ILE
36
n
36
ILE
36
B
LYS
37
n
37
LYS
37
B
ASP
38
n
38
ASP
38
B
ALA
39
n
39
ALA
39
B
LEU
40
n
40
LEU
40
B
ALA
41
n
41
ALA
41
B
TYR
42
n
42
TYR
42
B
ALA
43
n
43
ALA
43
B
TRP
44
n
44
TRP
44
B
GLY
45
n
45
GLY
45
B
VAL
46
n
46
VAL
46
B
PHE
47
n
47
PHE
47
B
ALA
48
n
48
ALA
48
B
ALA
49
n
49
ALA
49
B
ASN
50
n
50
ASN
50
B
THR
51
n
51
THR
51
B
ASP
52
n
52
ASP
52
B
TYR
53
n
53
TYR
53
B
PRO
54
n
54
PRO
54
B
CYS
55
n
55
CYS
55
B
LEU
56
n
56
LEU
56
B
THR
57
n
57
THR
57
B
ARG
58
n
58
ARG
58
B
LYS
59
n
59
LYS
59
B
GLU
60
n
60
GLU
60
B
PHE
61
n
61
PHE
61
B
GLU
62
n
62
GLU
62
B
GLY
63
n
63
GLY
63
B
ILE
64
n
64
ILE
64
B
ASP
65
n
65
ASP
65
B
TYR
66
n
66
TYR
66
B
ASP
67
n
67
ASP
67
B
ARG
68
n
68
ARG
68
B
GLU
69
n
69
GLU
69
B
THR
70
n
70
THR
70
B
ASN
71
n
71
ASN
71
B
LEU
72
n
72
LEU
72
B
ASN
73
n
73
ASN
73
B
LEU
74
n
74
LEU
74
B
THR
75
n
75
THR
75
B
LYS
76
n
76
LYS
76
B
LEU
77
n
77
LEU
77
B
GLU
78
n
78
GLU
78
B
VAL
79
n
79
VAL
79
B
ILE
80
n
80
ILE
80
B
THR
81
n
81
THR
81
B
ILE
82
n
82
ILE
82
B
MET
83
n
83
MET
83
B
GLU
84
n
84
GLU
84
B
GLN
85
n
85
GLN
85
B
ALA
86
n
86
ALA
86
B
PHE
87
n
87
PHE
87
B
CYS
88
n
88
CYS
88
B
TYR
89
n
89
TYR
89
B
LEU
90
n
90
LEU
90
B
ASN
91
n
91
ASN
91
B
GLY
92
n
92
GLY
92
B
LYS
93
n
93
LYS
93
B
SER
94
n
94
SER
94
B
PRO
95
n
95
PRO
95
B
ILE
96
n
96
ILE
96
B
LYS
97
n
97
LYS
97
B
GLY
98
n
98
GLY
98
B
VAL
99
n
99
VAL
99
B
PHE
100
n
100
PHE
100
B
VAL
101
n
101
VAL
101
B
PHE
102
n
102
PHE
102
B
ASP
103
n
103
ASP
103
B
ASP
104
n
104
ASP
104
B
GLU
105
n
105
GLU
105
B
GLY
106
n
106
GLY
106
B
LYS
107
n
107
LYS
107
B
GLU
108
n
108
GLU
108
B
SER
109
n
109
SER
109
B
VAL
110
n
110
VAL
110
B
ASN
111
n
111
ASN
111
B
PHE
112
n
112
PHE
112
B
VAL
113
n
113
VAL
113
B
ALA
114
n
114
ALA
114
B
PHE
115
n
115
PHE
115
B
ASN
116
n
116
ASN
116
B
LYS
117
n
117
LYS
117
B
ILE
118
n
118
ILE
118
B
THR
119
n
119
THR
119
B
ASP
120
n
120
ASP
120
B
VAL
121
n
121
VAL
121
B
ILE
122
n
122
ILE
122
B
ASN
123
n
123
ASN
123
B
ASN
124
n
124
ASN
124
B
ILE
125
n
125
ILE
125
B
GLU
126
n
126
GLU
126
B
ASP
127
n
127
ASP
127
B
GLN
128
n
128
GLN
128
B
TRP
129
n
129
TRP
129
B
SER
130
n
130
SER
130
B
VAL
131
n
131
VAL
131
B
ARG
132
n
132
ARG
132
B
ARG
133
n
133
ARG
133
B
LEU
134
n
134
LEU
134
B
MET
135
n
135
MET
135
B
GLN
136
n
136
GLN
136
B
ALA
137
n
137
ALA
137
B
LEU
138
n
138
LEU
138
B
GLY
139
n
139
GLY
139
B
THR
140
n
140
THR
140
B
ASP
141
n
141
ASP
141
B
LEU
142
n
142
LEU
142
B
ILE
143
n
143
ILE
143
B
VAL
144
n
144
VAL
144
B
ASN
145
n
145
ASN
145
B
ASN
146
n
146
ASN
146
B
PHE
147
n
147
PHE
147
B
ASP
148
n
148
ASP
148
B
ARG
149
n
149
ARG
149
B
MET
150
n
150
MET
150
B
TYR
151
n
151
TYR
151
B
TRP
152
n
152
TRP
152
B
VAL
153
n
153
VAL
153
B
LYS
154
n
154
LYS
154
B
LEU
155
n
155
LEU
155
B
PHE
156
n
156
PHE
156
B
ALA
157
n
157
ALA
157
B
LEU
158
n
158
LEU
158
B
ASP
159
n
159
ASP
159
B
TYR
160
n
160
TYR
160
B
LEU
161
n
161
LEU
161
B
ASP
162
n
162
ASP
162
B
LYS
163
n
163
LYS
163
B
PHE
164
n
164
PHE
164
B
ASN
165
n
165
ASN
165
B
SER
166
n
166
SER
166
B
GLY
167
n
167
GLY
167
B
TYR
168
n
168
TYR
168
B
ASP
169
n
169
ASP
169
B
TYR
170
n
170
TYR
170
B
TYR
171
n
171
TYR
171
B
ILE
172
n
172
ILE
172
B
VAL
173
n
173
VAL
173
B
PRO
174
n
174
PRO
174
B
ASP
175
n
175
ASP
175
B
THR
176
n
176
THR
176
B
ARG
177
n
177
ARG
177
B
GLN
178
n
178
GLN
178
B
ASP
179
n
179
ASP
179
B
HIS
180
n
180
HIS
180
B
GLU
181
n
181
GLU
181
B
MET
182
n
182
MET
182
B
ASP
183
n
183
ASP
183
B
ALA
184
n
184
ALA
184
B
ALA
185
n
185
ALA
185
B
ARG
186
n
186
ARG
186
B
ALA
187
n
187
ALA
187
B
MET
188
n
188
MET
188
B
GLY
189
n
189
GLY
189
B
ALA
190
n
190
ALA
190
B
THR
191
n
191
THR
191
B
VAL
192
n
192
VAL
192
B
ILE
193
n
193
ILE
193
B
HIS
194
n
194
HIS
194
B
VAL
195
n
195
VAL
195
B
VAL
196
n
196
VAL
196
B
ARG
197
n
197
ARG
197
B
PRO
198
n
198
PRO
198
B
GLY
199
n
199
GLY
199
B
n
200
200
B
n
201
201
B
n
202
202
B
n
203
203
B
n
204
204
B
n
205
205
B
n
206
206
B
n
207
207
B
n
208
208
B
n
209
209
B
ALA
210
n
210
ALA
210
B
GLY
211
n
211
GLY
211
B
LEU
212
n
212
LEU
212
B
PRO
213
n
213
PRO
213
B
ILE
214
n
214
ILE
214
B
ARG
215
n
215
ARG
215
B
ASP
216
n
216
ASP
216
B
GLY
217
n
217
GLY
217
B
ASP
218
n
218
ASP
218
B
LEU
219
n
219
LEU
219
B
VAL
220
n
220
VAL
220
B
ILE
221
n
221
ILE
221
B
THR
222
n
222
THR
222
B
ASN
223
n
223
ASN
223
B
ASP
224
n
224
ASP
224
B
GLY
225
n
225
GLY
225
B
SER
226
n
226
SER
226
B
LEU
227
n
227
LEU
227
B
GLU
228
n
228
GLU
228
B
GLU
229
n
229
GLU
229
B
LEU
230
n
230
LEU
230
B
PHE
231
n
231
PHE
231
B
SER
232
n
232
SER
232
B
LYS
233
n
233
LYS
233
B
ILE
234
n
234
ILE
234
B
LYS
235
n
235
LYS
235
B
ASN
236
n
236
ASN
236
B
THR
237
n
237
THR
237
B
LEU
238
n
238
LEU
238
B
LYS
239
n
239
LYS
239
B
VAL
240
n
240
VAL
240
B
LEU
241
n
241
LEU
241
B
0.1860000
author_and_software_defined_assembly
PISA
2
dimeric
3760
-36
21560
A
TYR
42
A
OH
TYR
42
1_555
A
MG
300
C
MG
MG
1_555
A
GLN
85
A
OE1
GLN
85
1_555
114.7
A
TYR
42
A
OH
TYR
42
1_555
A
MG
300
C
MG
MG
1_555
A
GLU
108
A
OE1
GLU
108
1_555
102.1
A
GLN
85
A
OE1
GLN
85
1_555
A
MG
300
C
MG
MG
1_555
A
GLU
108
A
OE1
GLU
108
1_555
143.1
B
TYR
42
B
OH
TYR
42
1_555
B
MG
300
E
MG
MG
1_555
B
GLN
85
B
OE1
GLN
85
1_555
106.2
B
TYR
42
B
OH
TYR
42
1_555
B
MG
300
E
MG
MG
1_555
B
GLU
108
B
OE2
GLU
108
1_555
104.6
B
GLN
85
B
OE1
GLN
85
1_555
B
MG
300
E
MG
MG
1_555
B
GLU
108
B
OE2
GLU
108
1_555
147.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
219
A
O
LEU
219
A
N
HIS
194
A
N
HIS
194
A
O
THR
191
A
O
THR
191
A
N
PHE
5
A
N
PHE
5
A
O
LYS
2
A
O
LYS
2
A
N
TYR
171
A
N
TYR
171
A
O
TYR
170
A
O
TYR
170
A
N
VAL
28
A
N
VAL
28
A
O
PHE
102
A
O
PHE
102
A
N
SER
109
A
N
SER
109
B
O
LEU
219
B
O
LEU
219
B
N
HIS
194
B
N
HIS
194
B
O
THR
191
B
O
THR
191
B
N
PHE
5
B
N
PHE
5
B
O
LYS
2
B
O
LYS
2
B
N
TYR
171
B
N
TYR
171
B
O
TYR
170
B
O
TYR
170
B
N
VAL
28
B
N
VAL
28
B
O
PHE
102
B
O
PHE
102
B
N
SER
109
B
N
SER
109
1
B
NH2
ARG
177
B
NH2
ARG
177
1
Y
1
B
GLN
200
B
GLN
200
1
Y
1
B
LYS
201
B
LYS
201
1
Y
1
B
SER
202
B
SER
202
1
Y
1
B
ASN
203
B
ASN
203
1
Y
1
B
ASP
204
B
ASP
204
1
Y
1
B
THR
205
B
THR
205
1
Y
1
B
HIS
206
B
HIS
206
1
Y
1
B
ILE
207
B
ILE
207
1
Y
1
B
THR
208
B
THR
208
1
Y
1
B
GLU
209
B
GLU
209
1
Y
1
A
A
OG1
OE1
THR
GLU
57
60
2.02
1
-3.53
0.50
120.30
116.77
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
58
58
58
N
1
-3.47
0.50
120.30
116.83
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
68
68
68
N
1
14.24
2.20
113.40
127.64
A
A
A
CA
CB
CG
GLU
GLU
GLU
105
105
105
N
1
-4.51
0.50
120.30
115.79
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
132
132
132
N
1
3.18
0.50
120.30
123.48
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
149
149
149
N
1
11.12
1.60
100.20
111.32
A
A
A
CG
SD
CE
MET
MET
MET
150
150
150
N
1
-3.43
0.50
120.30
116.87
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
132
132
132
N
1
9.82
1.40
123.60
133.42
B
B
B
CD
NE
CZ
ARG
ARG
ARG
133
133
133
N
1
-3.76
0.50
120.30
116.54
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
186
186
186
N
1
3.37
0.50
120.30
123.67
B
B
B
NE
CZ
NH2
ARG
ARG
ARG
186
186
186
N
1
-3.28
0.50
120.30
117.02
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
197
197
197
N
1
A
ALA
49
-24.92
-79.08
1
A
GLU
105
64.25
86.80
1
A
LEU
142
-91.12
-81.41
1
A
PHE
147
-121.25
-54.04
1
A
PRO
198
-36.14
117.65
1
B
ALA
48
-58.41
-0.66
1
B
ASP
52
-102.75
44.62
1
B
GLU
105
75.55
59.17
1
B
ASN
111
-47.87
166.01
1
B
LEU
142
-92.23
-77.13
1
B
PHE
147
-121.47
-53.00
39.6
0.1860000
2.2
10.0
31623
95.9
1
0.0
2.2
10.0
222
4061
71
0
3768
0.014
0.020
0.026
0.030
0.032
0.040
4.1
4.0
6.3
7.0
8.0
8.0
11.2
9.0
0.013
0.020
0.147
0.150
0.134
0.300
0.193
0.300
2.4
3.0
19.0
15.0
24.7
20.0
2.2
10.0
1DEL
31836
-3.0
0.0650000
1
3.0
96.5
refinement
PROLSQ
data reduction
DENZO
DEOXYNUCLEOSIDE MONOPHOSPHATE KINASE COMPLEXED WITH DEOXY-GMP AND AMP
1
N
N
1
N
N
2
N
N
3
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
LYS
14
A
LYS
14
HELX_P
A
ASN
24
A
ASN
24
1
1
11
A
GLY
34
A
GLY
34
HELX_P
A
PHE
47
A
PHE
47
1
2
14
A
ARG
58
A
ARG
58
HELX_P
A
PHE
61
A
PHE
61
1
3
4
A
LYS
76
A
LYS
76
HELX_P
A
GLY
92
A
GLY
92
1
4
17
A
PHE
112
A
PHE
112
HELX_P
A
ASN
123
A
ASN
123
1
5
12
A
VAL
131
A
VAL
131
HELX_P
A
GLY
139
A
GLY
139
1
6
9
A
ILE
143
A
ILE
143
HELX_P
A
ASN
146
A
ASN
146
1
7
4
A
TYR
151
A
TYR
151
HELX_P
A
LYS
163
A
LYS
163
1
8
13
A
ASP
179
A
ASP
179
HELX_P
A
ALA
187
A
ALA
187
1
9
9
A
LEU
227
A
LEU
227
HELX_P
A
VAL
240
A
VAL
240
1
10
14
B
LYS
14
B
LYS
14
HELX_P
B
ASN
24
B
ASN
24
1
11
11
B
GLY
34
B
GLY
34
HELX_P
B
ASN
50
B
ASN
50
1
12
17
B
ARG
58
B
ARG
58
HELX_P
B
PHE
61
B
PHE
61
1
13
4
B
LYS
76
B
LYS
76
HELX_P
B
GLY
92
B
GLY
92
1
14
17
B
PHE
112
B
PHE
112
HELX_P
B
ASN
124
B
ASN
124
1
15
13
B
VAL
131
B
VAL
131
HELX_P
B
GLY
139
B
GLY
139
1
16
9
B
ILE
143
B
ILE
143
HELX_P
B
ASN
146
B
ASN
146
1
17
4
B
TYR
151
B
TYR
151
HELX_P
B
ASP
162
B
ASP
162
1
18
12
B
ASP
179
B
ASP
179
HELX_P
B
ALA
187
B
ALA
187
1
19
9
B
LEU
227
B
LEU
227
HELX_P
B
LYS
239
B
LYS
239
1
20
13
metalc
2.587
A
TYR
42
A
OH
TYR
42
1_555
A
MG
300
C
MG
MG
1_555
metalc
2.375
A
GLN
85
A
OE1
GLN
85
1_555
A
MG
300
C
MG
MG
1_555
metalc
2.380
A
GLU
108
A
OE1
GLU
108
1_555
A
MG
300
C
MG
MG
1_555
metalc
2.360
B
TYR
42
B
OH
TYR
42
1_555
B
MG
300
E
MG
MG
1_555
metalc
2.544
B
GLN
85
B
OE1
GLN
85
1_555
B
MG
300
E
MG
MG
1_555
metalc
2.382
B
GLU
108
B
OE2
GLU
108
1_555
B
MG
300
E
MG
MG
1_555
PHOSPHOTRANSFERASE
TRANSFERASE, PHOSPHOTRANSFERASE
given
-0.988070
-0.131160
0.080740
-0.130910
0.439050
-0.888870
0.081140
-0.888830
-0.450990
130.82207
28.71690
25.97971
KDNM_BPT4
UNP
1
1
P04531
MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALAYAWGVFAANTDYPCLTRKEFEGIDYDRETNLNLTKLEVI
TIMEQAFCYLNGKSPIKGVFVFDDEGKESVNFVAFNKITDVINNIEDQWSVRRLMQALGTDLIVNNFDRMYWVKLFALDY
LDKFNSGYDYYIVPDTRQDHEMDAARAMGATVIHVVRPGQKSNDTHITEAGLPIRDGDLVITNDGSLEELFSKIKNTLKV
L
1
241
1DEL
1
241
P04531
A
1
1
241
1
241
1DEL
1
241
P04531
B
1
1
241
5
2
5
2
parallel
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
A
LEU
219
A
LEU
219
A
THR
222
A
THR
222
A
THR
191
A
THR
191
A
VAL
196
A
VAL
196
A
LYS
2
A
LYS
2
A
SER
7
A
SER
7
A
TYR
170
A
TYR
170
A
VAL
173
A
VAL
173
A
ALA
27
A
ALA
27
A
TYR
30
A
TYR
30
A
VAL
101
A
VAL
101
A
ASP
103
A
ASP
103
A
GLU
108
A
GLU
108
A
VAL
110
A
VAL
110
B
LEU
219
B
LEU
219
B
THR
222
B
THR
222
B
THR
191
B
THR
191
B
VAL
196
B
VAL
196
B
LYS
2
B
LYS
2
B
SER
7
B
SER
7
B
TYR
170
B
TYR
170
B
VAL
173
B
VAL
173
B
ALA
27
B
ALA
27
B
LYS
29
B
LYS
29
B
VAL
101
B
VAL
101
B
ASP
103
B
ASP
103
B
GLU
108
B
GLU
108
B
VAL
110
B
VAL
110
BINDING SITE FOR RESIDUE MG A 300
A
MG
300
Software
4
BINDING SITE FOR RESIDUE MG B 300
B
MG
300
Software
4
BINDING SITE FOR RESIDUE DGP A 301
A
DGP
301
Software
18
BINDING SITE FOR RESIDUE DGP B 301
B
DGP
301
Software
14
BINDING SITE FOR RESIDUE AMP B 302
B
AMP
302
Software
11
A
TYR
42
A
TYR
42
4
1_555
A
GLN
85
A
GLN
85
4
1_555
A
CYS
88
A
CYS
88
4
1_555
A
GLU
108
A
GLU
108
4
1_555
B
TYR
42
B
TYR
42
4
1_555
B
GLN
85
B
GLN
85
4
1_555
B
CYS
88
B
CYS
88
4
1_555
B
GLU
108
B
GLU
108
4
1_555
A
LYS
37
A
LYS
37
18
1_555
A
ARG
68
A
ARG
68
18
1_555
A
ARG
132
A
ARG
132
18
1_555
A
MET
135
A
MET
135
18
1_555
A
GLN
136
A
GLN
136
18
1_555
A
GLY
139
A
GLY
139
18
1_555
A
THR
140
A
THR
140
18
1_555
A
VAL
144
A
VAL
144
18
1_555
A
TRP
152
A
TRP
152
18
1_555
A
ASP
175
A
ASP
175
18
1_555
A
ARG
177
A
ARG
177
18
1_555
A
GLN
178
A
GLN
178
18
1_555
A
GLU
181
A
GLU
181
18
1_555
A
THR
208
A
THR
208
18
1_555
A
GLU
209
A
GLU
209
18
1_555
A
HOH
313
H
HOH
18
1_555
A
HOH
346
H
HOH
18
1_555
A
HOH
367
H
HOH
18
1_555
B
LEU
32
B
LEU
32
14
1_555
B
ALA
33
B
ALA
33
14
1_555
B
ILE
36
B
ILE
36
14
1_555
B
LYS
37
B
LYS
37
14
1_555
B
ARG
68
B
ARG
68
14
1_555
B
ARG
132
B
ARG
132
14
1_555
B
MET
135
B
MET
135
14
1_555
B
THR
140
B
THR
140
14
1_555
B
TRP
152
B
TRP
152
14
1_555
B
ASP
175
B
ASP
175
14
1_555
B
THR
176
B
THR
176
14
1_555
B
GLN
178
B
GLN
178
14
1_555
B
GLU
181
B
GLU
181
14
1_555
B
HOH
323
I
HOH
14
1_555
B
ARG
11
B
ARG
11
11
1_555
B
SER
12
B
SER
12
11
1_555
B
GLY
13
B
GLY
13
11
1_555
B
LYS
14
B
LYS
14
11
1_555
B
ASP
15
B
ASP
15
11
1_555
B
THR
16
B
THR
16
11
1_555
B
ASN
223
B
ASN
223
11
1_555
B
GLY
225
B
GLY
225
11
1_555
B
SER
226
B
SER
226
11
1_555
B
LEU
227
B
LEU
227
11
1_555
B
HOH
311
I
HOH
11
1_555
5
C 1 2 1