1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Lehmann, T.E.
Serrano, M.L.
Que Jr., L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C55 H85 N17 O21 S3
1416.560
BLEOMYCIN A2
N1-[3-(DIMETHYLSULFONIO)-PROPYL]BLEOMYCINAMIDE
non-polymer
Co 2
58.933
COBALT (II) ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
39
3886
3898
10.1021/bi991841p
10747776
Coordination chemistry of co(II)-bleomycin: its investigation through NMR and molecular dynamics.
2000
10.2210/pdb1dey/pdb
pdb_00001dey
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1416.560
BLEOMYCIN A2
1
syn
non-polymer
58.933
COBALT (II) ION
1
syn
non-polymer
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2000-04-24
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-03-23
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
1999-11-16
REL
BLM
BLEOMYCIN A2
CO
COBALT (II) ION
This structure was determined using standard 2D homonuclear techniques and T1 measuments
1
2D-COSY, 2D-TOCSY, 2D-HMQC, T1 measument
2D-COSY, 2D-TOCSY, 2D-HMQC, T1 measument
6.5
ambient
298
K
6.5
ambient
298
K
the structures are based on a total of 31 T1-derived distance constraints
molecular dynamics, simulated annealing
10mM Co(II)-BLM, 100% D2O, 50mM NaOD to adjust pH to 6.5
100% D2O
10mM Co(II)-BLM, 90% H2O, 10% D2O, 50mM NaOH to adjust pH to 6.5
90% H2O/10% D2O
Biosym/MSI
structure solution
DISCOVER_3
97.0
Biosym/MSI
refinement
DISCOVER_3
97.0
500
Varian
VXR500
300
Varian
VXR300
360
Bruker
AMX360
ALA
1
1
BLM
BLM
1
A
CO
10
2
CO
CO
2
A
author_defined_assembly
1
monomeric
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NG
BLM
1_555
84.2
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O1
BLM
1_555
48.5
A
BLM
1
A
NG
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O1
BLM
1_555
52.0
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NA
BLM
1_555
76.4
A
BLM
1
A
NG
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NA
BLM
1_555
52.5
A
BLM
1
A
O1
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NA
BLM
1_555
29.3
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NJ
BLM
1_555
94.3
A
BLM
1
A
NG
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NJ
BLM
1_555
178.3
A
BLM
1
A
O1
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NJ
BLM
1_555
126.4
A
BLM
1
A
NA
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NJ
BLM
1_555
126.5
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NB
BLM
1_555
86.1
A
BLM
1
A
NG
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NB
BLM
1_555
87.2
A
BLM
1
A
O1
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NB
BLM
1_555
55.0
A
BLM
1
A
NA
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NB
BLM
1_555
35.7
A
BLM
1
A
NJ
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NB
BLM
1_555
92.1
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NH
BLM
1_555
168.7
A
BLM
1
A
NG
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NH
BLM
1_555
85.5
A
BLM
1
A
O1
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NH
BLM
1_555
120.8
A
BLM
1
A
NA
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NH
BLM
1_555
93.7
A
BLM
1
A
NJ
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NH
BLM
1_555
96.0
A
BLM
1
A
NB
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
NH
BLM
1_555
88.9
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O70
BLM
1_555
96.1
A
BLM
1
A
NG
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O70
BLM
1_555
92.9
A
BLM
1
A
O1
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O70
BLM
1_555
126.5
A
BLM
1
A
NA
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O70
BLM
1_555
144.8
A
BLM
1
A
NJ
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O70
BLM
1_555
87.9
A
BLM
1
A
NB
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O70
BLM
1_555
177.8
A
BLM
1
A
NH
BLM
1_555
A
CO
2
B
CO
CO
1_555
A
BLM
1
A
O70
BLM
1_555
89.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
NMR SOLUTION STRUCTURE OF CO(II)-BLEOMYCIN A2
1
N
N
2
N
N
metalc
1.993
A
BLM
1
A
NC
BLM
1_555
A
CO
2
B
CO
CO
1_555
metalc
1.935
A
BLM
1
A
NG
BLM
1_555
A
CO
2
B
CO
CO
1_555
metalc
4.352
A
BLM
1
A
O1
BLM
1_555
A
CO
2
B
CO
CO
1_555
metalc
4.360
A
BLM
1
A
NA
BLM
1_555
A
CO
2
B
CO
CO
1_555
metalc
2.018
A
BLM
1
A
NJ
BLM
1_555
A
CO
2
B
CO
CO
1_555
metalc
2.008
A
BLM
1
A
NB
BLM
1_555
A
CO
2
B
CO
CO
1_555
metalc
1.932
A
BLM
1
A
NH
BLM
1_555
A
CO
2
B
CO
CO
1_555
metalc
1.961
A
BLM
1
A
O70
BLM
1_555
A
CO
2
B
CO
CO
1_555
ANTIBIOTIC
ANTIBIOTIC
BINDING SITE FOR RESIDUE BLM A 1
A
BLM
1
Software
1
BINDING SITE FOR RESIDUE CO A 2
A
CO
2
Software
1
A
CO
2
B
CO
1
1_555
A
BLM
1
A
BLM
1
1_555
1
P 1