1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Zangger, K.
Oz, G.
Otvos, J.D.
Armitage, I.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
8
2630
2638
10631978
Three-dimensional solution structure of mouse [Cd7]-metallothionein-1 by homonuclear and heteronuclear NMR spectroscopy.
1999
10.2210/pdb1dft/pdb
pdb_00001dft
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3017.507
METALLOTHIONEIN-1
N-TERMINAL DOMAIN (BETA)
1
man
polymer
112.411
CADMIUM ION
3
syn
non-polymer
no
no
MDPNCSCSTGGSCTCTSSCACKNCKCTSCK
MDPNCSCSTGGSCTCTSSCACKNCKCTSCK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
house mouse
Mus
Escherichia
sample
10090
Mus musculus
562
Escherichia coli
PLASMID
PET3D
database_2
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1999-12-01
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
1DFS CONTAINS THE ALPHA-DOMAIN OF MOUSE METALLOTHIONEIN-1
RCSB
Y
RCSB
1999-11-20
REL
REL
CD
CADMIUM ION
THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES AND AN ACCORDION CD-H HSQC
MINIMIZED AVERAGE STRUCTURE
50
1
2D NOESY
2D TOCSY
ACCORDION CD-H HSQC
15mMKPI
6.5
AMBIENT
283
K
15mMKPI
6.5
AMBIENT
298
K
A TOTAL OF 103 NOE-DERIVED DISTANCE CONSTRAINTS AND 12 CD-S CONNECTIVITIES
HYBRID DISTANCE GEOMETRY-DYNAMICAL SIMULATED ANNEALING
minimized average structure
0.7MM MOUSE METALLOTHIONEIN-1, NATURAL ABUNDANCE, 15MM PHOSPHATE BUFFER NA
VARIAN
data analysis
VNMR
6.1A
BRUNGER
structure solution
X-PLOR
3.851
BRUNGER
refinement
X-PLOR
3.851
800
Varian
UNITY INOVA
600
Varian
UNITY INOVA
KDS
31
2
CD
CD
31
A
KDS
31
2
CD
CD
32
A
KDS
31
2
CD
CD
33
A
MET
1
n
1
MET
1
A
ASP
2
n
2
ASP
2
A
PRO
3
n
3
PRO
3
A
ASN
4
n
4
ASN
4
A
CYS
5
n
5
CYS
5
A
SER
6
n
6
SER
6
A
CYS
7
n
7
CYS
7
A
SER
8
n
8
SER
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
GLY
11
n
11
GLY
11
A
SER
12
n
12
SER
12
A
CYS
13
n
13
CYS
13
A
THR
14
n
14
THR
14
A
CYS
15
n
15
CYS
15
A
THR
16
n
16
THR
16
A
SER
17
n
17
SER
17
A
SER
18
n
18
SER
18
A
CYS
19
n
19
CYS
19
A
ALA
20
n
20
ALA
20
A
CYS
21
n
21
CYS
21
A
LYS
22
n
22
LYS
22
A
ASN
23
n
23
ASN
23
A
CYS
24
n
24
CYS
24
A
LYS
25
n
25
LYS
25
A
CYS
26
n
26
CYS
26
A
THR
27
n
27
THR
27
A
SER
28
n
28
SER
28
A
CYS
29
n
29
CYS
29
A
LYS
30
n
30
LYS
30
A
author_defined_assembly
1
monomeric
A
CYS
5
A
SG
CYS
5
1_555
A
CD
32
C
CD
CD
1_555
A
CYS
7
A
SG
CYS
7
1_555
104.4
A
CYS
5
A
SG
CYS
5
1_555
A
CD
32
C
CD
CD
1_555
A
CYS
21
A
SG
CYS
21
1_555
123.6
A
CYS
7
A
SG
CYS
7
1_555
A
CD
32
C
CD
CD
1_555
A
CYS
21
A
SG
CYS
21
1_555
106.5
A
CYS
5
A
SG
CYS
5
1_555
A
CD
32
C
CD
CD
1_555
A
CYS
24
A
SG
CYS
24
1_555
101.1
A
CYS
7
A
SG
CYS
7
1_555
A
CD
32
C
CD
CD
1_555
A
CYS
24
A
SG
CYS
24
1_555
123.3
A
CYS
21
A
SG
CYS
21
1_555
A
CD
32
C
CD
CD
1_555
A
CYS
24
A
SG
CYS
24
1_555
99.6
A
CYS
7
A
SG
CYS
7
1_555
A
CD
33
D
CD
CD
1_555
A
CYS
13
A
SG
CYS
13
1_555
107.5
A
CYS
7
A
SG
CYS
7
1_555
A
CD
33
D
CD
CD
1_555
A
CYS
15
A
SG
CYS
15
1_555
110.4
A
CYS
13
A
SG
CYS
13
1_555
A
CD
33
D
CD
CD
1_555
A
CYS
15
A
SG
CYS
15
1_555
121.2
A
CYS
7
A
SG
CYS
7
1_555
A
CD
33
D
CD
CD
1_555
A
CYS
26
A
SG
CYS
26
1_555
120.2
A
CYS
13
A
SG
CYS
13
1_555
A
CD
33
D
CD
CD
1_555
A
CYS
26
A
SG
CYS
26
1_555
89.2
A
CYS
15
A
SG
CYS
15
1_555
A
CD
33
D
CD
CD
1_555
A
CYS
26
A
SG
CYS
26
1_555
107.8
A
CYS
15
A
SG
CYS
15
1_555
A
CD
31
B
CD
CD
1_555
A
CYS
19
A
SG
CYS
19
1_555
108.6
A
CYS
15
A
SG
CYS
15
1_555
A
CD
31
B
CD
CD
1_555
A
CYS
24
A
SG
CYS
24
1_555
120.2
A
CYS
19
A
SG
CYS
19
1_555
A
CD
31
B
CD
CD
1_555
A
CYS
24
A
SG
CYS
24
1_555
95.5
A
CYS
15
A
SG
CYS
15
1_555
A
CD
31
B
CD
CD
1_555
A
CYS
29
A
SG
CYS
29
1_555
112.8
A
CYS
19
A
SG
CYS
19
1_555
A
CD
31
B
CD
CD
1_555
A
CYS
29
A
SG
CYS
29
1_555
111.8
A
CYS
24
A
SG
CYS
24
1_555
A
CD
31
B
CD
CD
1_555
A
CYS
29
A
SG
CYS
29
1_555
106.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
9.92
1.10
114.20
124.12
A
A
A
CA
CB
SG
CYS
CYS
CYS
5
5
5
N
1
7.41
1.10
114.20
121.61
A
A
A
CA
CB
SG
CYS
CYS
CYS
21
21
21
N
1
8.05
1.10
114.20
122.25
A
A
A
CA
CB
SG
CYS
CYS
CYS
24
24
24
N
1
A
A
N
CA
MET
MET
1
1
0.155
0.020
1.459
1.614
N
1
A
A
CA
CB
MET
MET
1
1
0.180
0.022
1.535
1.715
N
1
A
A
N
CA
ASP
ASP
2
2
0.161
0.020
1.459
1.620
N
1
A
A
CA
C
ASP
ASP
2
2
0.166
0.026
1.525
1.691
N
1
A
A
C
N
ASP
PRO
2
3
0.166
0.019
1.338
1.504
Y
1
A
A
N
CA
PRO
PRO
3
3
0.137
0.017
1.468
1.605
N
1
A
A
CA
C
PRO
PRO
3
3
0.156
0.020
1.524
1.680
N
1
A
A
N
CA
ASN
ASN
4
4
0.151
0.020
1.459
1.610
N
1
A
A
C
N
ASN
CYS
4
5
0.148
0.023
1.336
1.484
Y
1
A
A
N
CA
CYS
CYS
5
5
0.169
0.020
1.459
1.628
N
1
A
A
CA
CB
CYS
CYS
5
5
0.139
0.022
1.535
1.674
N
1
A
A
N
CA
SER
SER
6
6
0.160
0.020
1.459
1.619
N
1
A
A
CA
CB
SER
SER
6
6
0.109
0.015
1.525
1.634
N
1
A
A
CA
C
SER
SER
6
6
0.171
0.026
1.525
1.696
N
1
A
A
N
CA
CYS
CYS
7
7
0.199
0.020
1.459
1.658
N
1
A
A
CA
CB
CYS
CYS
7
7
0.156
0.022
1.535
1.691
N
1
A
A
CA
C
CYS
CYS
7
7
0.163
0.026
1.525
1.688
N
1
A
A
N
CA
SER
SER
8
8
0.201
0.020
1.459
1.660
N
1
A
A
CA
CB
SER
SER
8
8
0.124
0.015
1.525
1.649
N
1
A
A
CA
C
SER
SER
8
8
0.158
0.026
1.525
1.683
N
1
A
A
C
N
SER
THR
8
9
0.152
0.023
1.336
1.488
Y
1
A
A
N
CA
THR
THR
9
9
0.197
0.020
1.459
1.656
N
1
A
A
CA
CB
THR
THR
9
9
0.182
0.026
1.529
1.711
N
1
A
A
N
CA
GLY
GLY
10
10
0.149
0.015
1.456
1.605
N
1
A
A
CA
C
GLY
GLY
10
10
0.123
0.016
1.514
1.637
N
1
A
A
N
CA
GLY
GLY
11
11
0.125
0.015
1.456
1.581
N
1
A
A
CA
C
GLY
GLY
11
11
0.098
0.016
1.514
1.612
N
1
A
A
N
CA
SER
SER
12
12
0.175
0.020
1.459
1.634
N
1
A
A
CA
CB
SER
SER
12
12
0.121
0.015
1.525
1.646
N
1
A
A
N
CA
CYS
CYS
13
13
0.181
0.020
1.459
1.640
N
1
A
A
CA
C
CYS
CYS
13
13
0.160
0.026
1.525
1.685
N
1
A
A
N
CA
THR
THR
14
14
0.160
0.020
1.459
1.619
N
1
A
A
CA
CB
THR
THR
14
14
0.203
0.026
1.529
1.732
N
1
A
A
C
N
THR
CYS
14
15
0.148
0.023
1.336
1.484
Y
1
A
A
N
CA
CYS
CYS
15
15
0.204
0.020
1.459
1.663
N
1
A
A
CA
CB
CYS
CYS
15
15
0.162
0.022
1.535
1.697
N
1
A
A
CA
C
CYS
CYS
15
15
0.167
0.026
1.525
1.692
N
1
A
A
N
CA
THR
THR
16
16
0.185
0.020
1.459
1.644
N
1
A
A
CA
CB
THR
THR
16
16
0.176
0.026
1.529
1.705
N
1
A
A
N
CA
SER
SER
17
17
0.181
0.020
1.459
1.640
N
1
A
A
CA
CB
SER
SER
17
17
0.120
0.015
1.525
1.645
N
1
A
A
N
CA
SER
SER
18
18
0.162
0.020
1.459
1.621
N
1
A
A
CA
CB
SER
SER
18
18
0.111
0.015
1.525
1.636
N
1
A
A
N
CA
CYS
CYS
19
19
0.175
0.020
1.459
1.634
N
1
A
A
CA
CB
CYS
CYS
19
19
0.150
0.022
1.535
1.685
N
1
A
A
N
CA
ALA
ALA
20
20
0.166
0.020
1.459
1.625
N
1
A
A
N
CA
CYS
CYS
21
21
0.165
0.020
1.459
1.624
N
1
A
A
CA
C
CYS
CYS
21
21
0.182
0.026
1.525
1.707
N
1
A
A
N
CA
LYS
LYS
22
22
0.149
0.020
1.459
1.608
N
1
A
A
CA
C
LYS
LYS
22
22
0.161
0.026
1.525
1.686
N
1
A
A
N
CA
ASN
ASN
23
23
0.156
0.020
1.459
1.615
N
1
A
A
CA
C
ASN
ASN
23
23
0.162
0.026
1.525
1.687
N
1
A
A
N
CA
CYS
CYS
24
24
0.199
0.020
1.459
1.658
N
1
A
A
CA
CB
CYS
CYS
24
24
0.163
0.022
1.535
1.698
N
1
A
A
N
CA
LYS
LYS
25
25
0.166
0.020
1.459
1.625
N
1
A
A
CA
CB
LYS
LYS
25
25
0.151
0.022
1.535
1.686
N
1
A
A
CA
C
LYS
LYS
25
25
0.165
0.026
1.525
1.690
N
1
A
A
N
CA
CYS
CYS
26
26
0.179
0.020
1.459
1.638
N
1
A
A
CA
CB
CYS
CYS
26
26
0.148
0.022
1.535
1.683
N
1
A
A
C
N
CYS
THR
26
27
0.143
0.023
1.336
1.479
Y
1
A
A
N
CA
THR
THR
27
27
0.183
0.020
1.459
1.642
N
1
A
A
CA
CB
THR
THR
27
27
0.172
0.026
1.529
1.701
N
1
A
A
N
CA
SER
SER
28
28
0.188
0.020
1.459
1.647
N
1
A
A
CA
CB
SER
SER
28
28
0.119
0.015
1.525
1.644
N
1
A
A
N
CA
CYS
CYS
29
29
0.172
0.020
1.459
1.631
N
1
A
A
CA
CB
CYS
CYS
29
29
0.151
0.022
1.535
1.686
N
1
A
A
N
CA
LYS
LYS
30
30
0.190
0.020
1.459
1.649
N
1
A
A
CA
CB
LYS
LYS
30
30
0.142
0.022
1.535
1.677
N
1
A
SER
8
113.65
-137.80
1
A
THR
9
-150.44
-42.41
1
A
THR
14
86.76
-92.43
1
A
CYS
15
59.75
70.99
1
A
THR
16
-104.36
-112.18
1
A
CYS
21
-123.09
-126.29
1
A
LYS
22
-132.86
-62.44
1
A
ASN
23
-133.68
-61.84
1
A
CYS
24
83.42
151.12
1
A
LYS
25
-105.86
66.71
1
A
CYS
26
-116.27
-120.45
1
A
THR
27
-103.04
-82.39
minimized average
SOLUTION STRUCTURE OF THE BETA-DOMAIN OF MOUSE METALLOTHIONEIN-1
1
N
N
2
N
N
2
N
N
2
N
N
metalc
2.566
A
CYS
5
A
SG
CYS
5
1_555
A
CD
32
C
CD
CD
1_555
metalc
2.545
A
CYS
7
A
SG
CYS
7
1_555
A
CD
32
C
CD
CD
1_555
metalc
2.551
A
CYS
7
A
SG
CYS
7
1_555
A
CD
33
D
CD
CD
1_555
metalc
2.543
A
CYS
13
A
SG
CYS
13
1_555
A
CD
33
D
CD
CD
1_555
metalc
2.564
A
CYS
15
A
SG
CYS
15
1_555
A
CD
31
B
CD
CD
1_555
metalc
2.550
A
CYS
15
A
SG
CYS
15
1_555
A
CD
33
D
CD
CD
1_555
metalc
2.540
A
CYS
19
A
SG
CYS
19
1_555
A
CD
31
B
CD
CD
1_555
metalc
2.577
A
CYS
21
A
SG
CYS
21
1_555
A
CD
32
C
CD
CD
1_555
metalc
2.541
A
CYS
24
A
SG
CYS
24
1_555
A
CD
31
B
CD
CD
1_555
metalc
2.543
A
CYS
24
A
SG
CYS
24
1_555
A
CD
32
C
CD
CD
1_555
metalc
2.531
A
CYS
26
A
SG
CYS
26
1_555
A
CD
33
D
CD
CD
1_555
metalc
2.555
A
CYS
29
A
SG
CYS
29
1_555
A
CD
31
B
CD
CD
1_555
METAL BINDING PROTEIN
HALF TURN, CD-S CLUSTER, METAL BINDING PROTEIN
MT1_MOUSE
UNP
1
P02802
1
30
1DFT
1
30
P02802
A
1
1
30
BINDING SITE FOR RESIDUE CD A 31
A
CD
31
Software
4
BINDING SITE FOR RESIDUE CD A 32
A
CD
32
Software
4
BINDING SITE FOR RESIDUE CD A 33
A
CD
33
Software
4
A
CYS
15
A
CYS
15
4
1_555
A
CYS
19
A
CYS
19
4
1_555
A
CYS
24
A
CYS
24
4
1_555
A
CYS
29
A
CYS
29
4
1_555
A
CYS
5
A
CYS
5
4
1_555
A
CYS
7
A
CYS
7
4
1_555
A
CYS
21
A
CYS
21
4
1_555
A
CYS
24
A
CYS
24
4
1_555
A
CYS
7
A
CYS
7
4
1_555
A
CYS
13
A
CYS
13
4
1_555
A
CYS
15
A
CYS
15
4
1_555
A
CYS
26
A
CYS
26
4
1_555
1
P 1