0.015052 0.008690 0.000000 0.000000 0.017381 0.000000 0.000000 0.000000 0.005057 0.00000 0.00000 0.00000 Hymowitz, S.G. O'ConnelL, M.P. Ultsch, M.H. de Vos, A.M. Kelley, R.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 66.435 66.435 197.727 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US Biochemistry BICHAW 0033 0006-2960 39 633 650 10.1021/bi992242l 10651627 A unique zinc-binding site revealed by a high-resolution X-ray structure of homotrimeric Apo2L/TRAIL. 2000 10.2210/pdb1dg6/pdb pdb_00001dg6 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 93 1 CCD 1999-04-23 CUSTOM-MADE SINGLE WAVELENGTH M x-ray 1 1.03321 1.0 19-ID APS 1.03321 SYNCHROTRON APS BEAMLINE 19-ID 22106.832 APO2L/TNF-RELATED APOPOTIS INDUCING LIGAND (TRAIL) TRIMERIC JELLY-ROLL DOMAIN OF APO2L D218A 1 man polymer 65.409 ZINC ION 1 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 226 nat water no no MILRTSEETISTVQEKQQNISPLVRERGPQRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLR NGELVIHEKGFYYIYSQTYFRFQEEIKENTKNDKQMVQYIYKYTSYPAPILLMKSARNSCWSKDAEYGLYSIYQGGIFEL KENDRIFVSVTNEHLIDMDHEASFFGAFLVG MILRTSEETISTVQEKQQNISPLVRERGPQRVAAHITGTRGRSNTLSSPNSKNEKALGRKINSWESSRSGHSFLSNLHLR NGELVIHEKGFYYIYSQTYFRFQEEIKENTKNDKQMVQYIYKYTSYPAPILLMKSARNSCWSKDAEYGLYSIYQGGIFEL KENDRIFVSVTNEHLIDMDHEASFFGAFLVG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo HUMAN PLACENTA Escherichia sample HUMAN PLACENTA 9606 Homo sapiens 562 Escherichia coli TRP PROMOTER 1 1.9 32.0 VAPOR DIFFUSION, SITTING DROP 7.5 WELL SOLUTION 32% MPD; DROP 1.2MG/ML APO2L, 20MM TRIS HCL PH 7.5, 1% MPD, VAPOR DIFFUSION, SITTING DROP, temperature 277K 277 struct_ref_seq_dif chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Database references Data collection Database references Derived calculations Refinement description 1 0 2000-01-26 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-03-14 1 4 2023-08-09 _struct_ref_seq_dif.details _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 1999-11-23 REL REL ZN ZINC ION CL CHLORIDE ION HOH water 1TNF truncated model of tnfa pdb code 1tnf PDB experimental model ZN 300 2 ZN ZN 300 A CL 406 3 CL CL 406 A HOH 1 4 HOH HOH 407 A HOH 2 4 HOH HOH 408 A HOH 3 4 HOH HOH 409 A HOH 4 4 HOH HOH 410 A HOH 5 4 HOH HOH 411 A HOH 6 4 HOH HOH 412 A HOH 7 4 HOH HOH 413 A HOH 8 4 HOH HOH 414 A HOH 9 4 HOH HOH 415 A HOH 10 4 HOH HOH 416 A HOH 11 4 HOH HOH 417 A HOH 12 4 HOH HOH 418 A HOH 13 4 HOH HOH 419 A HOH 14 4 HOH HOH 420 A HOH 15 4 HOH HOH 421 A HOH 16 4 HOH HOH 422 A HOH 17 4 HOH HOH 423 A HOH 18 4 HOH HOH 424 A HOH 19 4 HOH HOH 425 A HOH 20 4 HOH HOH 426 A HOH 21 4 HOH HOH 427 A HOH 22 4 HOH HOH 428 A HOH 23 4 HOH HOH 429 A HOH 24 4 HOH HOH 430 A HOH 25 4 HOH HOH 431 A HOH 26 4 HOH HOH 432 A HOH 27 4 HOH HOH 433 A HOH 28 4 HOH HOH 434 A HOH 29 4 HOH HOH 435 A HOH 30 4 HOH HOH 436 A HOH 31 4 HOH HOH 437 A HOH 32 4 HOH HOH 438 A HOH 33 4 HOH HOH 439 A HOH 34 4 HOH HOH 440 A HOH 35 4 HOH HOH 441 A HOH 36 4 HOH HOH 442 A HOH 37 4 HOH HOH 443 A HOH 38 4 HOH HOH 444 A HOH 39 4 HOH HOH 445 A HOH 40 4 HOH HOH 446 A HOH 41 4 HOH HOH 447 A HOH 42 4 HOH HOH 448 A HOH 43 4 HOH HOH 449 A HOH 44 4 HOH HOH 450 A HOH 45 4 HOH HOH 451 A HOH 46 4 HOH HOH 452 A HOH 47 4 HOH HOH 453 A HOH 48 4 HOH HOH 454 A HOH 49 4 HOH HOH 455 A HOH 50 4 HOH HOH 456 A HOH 51 4 HOH HOH 457 A HOH 52 4 HOH HOH 458 A HOH 53 4 HOH HOH 459 A HOH 54 4 HOH HOH 460 A HOH 55 4 HOH HOH 461 A HOH 56 4 HOH HOH 462 A HOH 57 4 HOH HOH 463 A HOH 58 4 HOH HOH 464 A HOH 59 4 HOH HOH 465 A HOH 60 4 HOH HOH 466 A HOH 61 4 HOH HOH 467 A HOH 62 4 HOH HOH 468 A HOH 63 4 HOH HOH 469 A HOH 64 4 HOH HOH 470 A HOH 65 4 HOH HOH 471 A HOH 66 4 HOH HOH 472 A HOH 67 4 HOH HOH 473 A HOH 68 4 HOH HOH 474 A HOH 69 4 HOH HOH 475 A HOH 70 4 HOH HOH 476 A HOH 71 4 HOH HOH 477 A HOH 72 4 HOH HOH 478 A HOH 73 4 HOH HOH 479 A HOH 74 4 HOH HOH 480 A HOH 75 4 HOH HOH 481 A HOH 76 4 HOH HOH 482 A HOH 77 4 HOH HOH 483 A HOH 78 4 HOH HOH 484 A HOH 79 4 HOH HOH 485 A HOH 80 4 HOH HOH 486 A HOH 81 4 HOH HOH 487 A HOH 82 4 HOH HOH 488 A HOH 83 4 HOH HOH 489 A HOH 84 4 HOH HOH 490 A HOH 85 4 HOH HOH 491 A HOH 86 4 HOH HOH 492 A HOH 87 4 HOH HOH 493 A HOH 88 4 HOH HOH 494 A HOH 89 4 HOH HOH 495 A HOH 90 4 HOH HOH 496 A HOH 91 4 HOH HOH 497 A HOH 92 4 HOH HOH 498 A HOH 93 4 HOH HOH 499 A HOH 94 4 HOH HOH 500 A HOH 95 4 HOH HOH 501 A HOH 96 4 HOH HOH 502 A HOH 97 4 HOH HOH 503 A HOH 98 4 HOH HOH 504 A HOH 99 4 HOH HOH 505 A HOH 100 4 HOH HOH 506 A HOH 101 4 HOH HOH 507 A HOH 102 4 HOH HOH 508 A HOH 103 4 HOH HOH 509 A HOH 104 4 HOH HOH 510 A HOH 105 4 HOH HOH 511 A HOH 106 4 HOH HOH 512 A HOH 107 4 HOH HOH 513 A HOH 108 4 HOH HOH 514 A HOH 109 4 HOH HOH 515 A HOH 110 4 HOH HOH 516 A HOH 111 4 HOH HOH 517 A HOH 112 4 HOH HOH 518 A HOH 113 4 HOH HOH 519 A HOH 114 4 HOH HOH 520 A HOH 115 4 HOH HOH 521 A HOH 116 4 HOH HOH 522 A HOH 117 4 HOH HOH 523 A HOH 118 4 HOH HOH 524 A HOH 119 4 HOH HOH 525 A HOH 120 4 HOH HOH 526 A HOH 121 4 HOH HOH 527 A HOH 122 4 HOH HOH 528 A HOH 123 4 HOH HOH 529 A HOH 124 4 HOH HOH 530 A HOH 125 4 HOH HOH 531 A HOH 126 4 HOH HOH 532 A HOH 127 4 HOH HOH 533 A HOH 128 4 HOH HOH 534 A HOH 129 4 HOH HOH 535 A HOH 130 4 HOH HOH 536 A HOH 131 4 HOH HOH 537 A HOH 132 4 HOH HOH 538 A HOH 133 4 HOH HOH 539 A HOH 134 4 HOH HOH 540 A HOH 135 4 HOH HOH 541 A HOH 136 4 HOH HOH 542 A HOH 137 4 HOH HOH 543 A HOH 138 4 HOH HOH 544 A HOH 139 4 HOH HOH 545 A HOH 140 4 HOH HOH 546 A HOH 141 4 HOH HOH 547 A HOH 142 4 HOH HOH 548 A HOH 143 4 HOH HOH 549 A HOH 144 4 HOH HOH 550 A HOH 145 4 HOH HOH 551 A HOH 146 4 HOH HOH 552 A HOH 147 4 HOH HOH 553 A HOH 148 4 HOH HOH 554 A HOH 149 4 HOH HOH 555 A HOH 150 4 HOH HOH 556 A HOH 151 4 HOH HOH 557 A HOH 152 4 HOH HOH 558 A HOH 153 4 HOH HOH 559 A HOH 154 4 HOH HOH 560 A HOH 155 4 HOH HOH 561 A HOH 156 4 HOH HOH 562 A HOH 157 4 HOH HOH 563 A HOH 158 4 HOH HOH 564 A HOH 159 4 HOH HOH 565 A HOH 160 4 HOH HOH 566 A HOH 161 4 HOH HOH 567 A HOH 162 4 HOH HOH 568 A HOH 163 4 HOH HOH 569 A HOH 164 4 HOH HOH 570 A HOH 165 4 HOH HOH 571 A HOH 166 4 HOH HOH 572 A HOH 167 4 HOH HOH 573 A HOH 168 4 HOH HOH 574 A HOH 169 4 HOH HOH 575 A HOH 170 4 HOH HOH 576 A HOH 171 4 HOH HOH 577 A HOH 172 4 HOH HOH 578 A HOH 173 4 HOH HOH 579 A HOH 174 4 HOH HOH 580 A HOH 175 4 HOH HOH 581 A HOH 176 4 HOH HOH 582 A HOH 177 4 HOH HOH 583 A HOH 178 4 HOH HOH 584 A HOH 179 4 HOH HOH 585 A HOH 180 4 HOH HOH 586 A HOH 181 4 HOH HOH 587 A HOH 182 4 HOH HOH 588 A HOH 183 4 HOH HOH 589 A HOH 184 4 HOH HOH 590 A HOH 185 4 HOH HOH 591 A HOH 186 4 HOH HOH 592 A HOH 187 4 HOH HOH 593 A HOH 188 4 HOH HOH 594 A HOH 189 4 HOH HOH 595 A HOH 190 4 HOH HOH 596 A HOH 191 4 HOH HOH 597 A HOH 192 4 HOH HOH 598 A HOH 193 4 HOH HOH 599 A HOH 194 4 HOH HOH 600 A HOH 195 4 HOH HOH 601 A HOH 196 4 HOH HOH 602 A HOH 197 4 HOH HOH 603 A HOH 198 4 HOH HOH 604 A HOH 199 4 HOH HOH 605 A HOH 200 4 HOH HOH 606 A HOH 201 4 HOH HOH 607 A HOH 202 4 HOH HOH 608 A HOH 203 4 HOH HOH 609 A HOH 204 4 HOH HOH 610 A HOH 205 4 HOH HOH 611 A HOH 206 4 HOH HOH 612 A HOH 207 4 HOH HOH 613 A HOH 208 4 HOH HOH 614 A HOH 209 4 HOH HOH 615 A HOH 210 4 HOH HOH 616 A HOH 211 4 HOH HOH 617 A HOH 212 4 HOH HOH 618 A HOH 213 4 HOH HOH 619 A HOH 214 4 HOH HOH 620 A HOH 215 4 HOH HOH 621 A HOH 216 4 HOH HOH 622 A HOH 217 4 HOH HOH 623 A HOH 218 4 HOH HOH 624 A HOH 219 4 HOH HOH 625 A HOH 220 4 HOH HOH 626 A HOH 221 4 HOH HOH 627 A HOH 222 4 HOH HOH 628 A HOH 223 4 HOH HOH 629 A HOH 224 4 HOH HOH 630 A HOH 225 4 HOH HOH 631 A HOH 226 4 HOH HOH 632 A n 1 91 A n 2 92 A n 3 93 A n 4 94 A n 5 95 A n 6 96 A n 7 97 A n 8 98 A n 9 99 A n 10 100 A n 11 101 A n 12 102 A n 13 103 A n 14 104 A n 15 105 A n 16 106 A n 17 107 A n 18 108 A n 19 109 A n 20 110 A n 21 111 A n 22 112 A n 23 113 A n 24 114 A n 25 115 A n 26 116 A n 27 117 A n 28 118 A n 29 119 A GLN 120 n 30 GLN 120 A ARG 121 n 31 ARG 121 A VAL 122 n 32 VAL 122 A ALA 123 n 33 ALA 123 A ALA 124 n 34 ALA 124 A HIS 125 n 35 HIS 125 A ILE 126 n 36 ILE 126 A THR 127 n 37 THR 127 A GLY 128 n 38 GLY 128 A THR 129 n 39 THR 129 A ARG 130 n 40 ARG 130 A n 41 131 A n 42 132 A n 43 133 A n 44 134 A n 45 135 A n 46 136 A n 47 137 A n 48 138 A n 49 139 A n 50 140 A n 51 141 A LYS 142 n 52 LYS 142 A ASN 143 n 53 ASN 143 A GLU 144 n 54 GLU 144 A LYS 145 n 55 LYS 145 A ALA 146 n 56 ALA 146 A LEU 147 n 57 LEU 147 A GLY 148 n 58 GLY 148 A ARG 149 n 59 ARG 149 A LYS 150 n 60 LYS 150 A ILE 151 n 61 ILE 151 A ASN 152 n 62 ASN 152 A SER 153 n 63 SER 153 A TRP 154 n 64 TRP 154 A GLU 155 n 65 GLU 155 A SER 156 n 66 SER 156 A SER 157 n 67 SER 157 A ARG 158 n 68 ARG 158 A SER 159 n 69 SER 159 A GLY 160 n 70 GLY 160 A HIS 161 n 71 HIS 161 A SER 162 n 72 SER 162 A PHE 163 n 73 PHE 163 A LEU 164 n 74 LEU 164 A SER 165 n 75 SER 165 A ASN 166 n 76 ASN 166 A LEU 167 n 77 LEU 167 A HIS 168 n 78 HIS 168 A LEU 169 n 79 LEU 169 A ARG 170 n 80 ARG 170 A ASN 171 n 81 ASN 171 A GLY 172 n 82 GLY 172 A GLU 173 n 83 GLU 173 A LEU 174 n 84 LEU 174 A VAL 175 n 85 VAL 175 A ILE 176 n 86 ILE 176 A HIS 177 n 87 HIS 177 A GLU 178 n 88 GLU 178 A LYS 179 n 89 LYS 179 A GLY 180 n 90 GLY 180 A PHE 181 n 91 PHE 181 A TYR 182 n 92 TYR 182 A TYR 183 n 93 TYR 183 A ILE 184 n 94 ILE 184 A TYR 185 n 95 TYR 185 A SER 186 n 96 SER 186 A GLN 187 n 97 GLN 187 A THR 188 n 98 THR 188 A TYR 189 n 99 TYR 189 A PHE 190 n 100 PHE 190 A ARG 191 n 101 ARG 191 A PHE 192 n 102 PHE 192 A GLN 193 n 103 GLN 193 A GLU 194 n 104 GLU 194 A n 105 195 A n 106 196 A LYS 197 n 107 LYS 197 A GLU 198 n 108 GLU 198 A ASN 199 n 109 ASN 199 A THR 200 n 110 THR 200 A LYS 201 n 111 LYS 201 A ASN 202 n 112 ASN 202 A ASP 203 n 113 ASP 203 A LYS 204 n 114 LYS 204 A GLN 205 n 115 GLN 205 A MET 206 n 116 MET 206 A VAL 207 n 117 VAL 207 A GLN 208 n 118 GLN 208 A TYR 209 n 119 TYR 209 A ILE 210 n 120 ILE 210 A TYR 211 n 121 TYR 211 A LYS 212 n 122 LYS 212 A TYR 213 n 123 TYR 213 A THR 214 n 124 THR 214 A SER 215 n 125 SER 215 A TYR 216 n 126 TYR 216 A PRO 217 n 127 PRO 217 A ALA 218 n 128 ALA 218 A PRO 219 n 129 PRO 219 A ILE 220 n 130 ILE 220 A LEU 221 n 131 LEU 221 A LEU 222 n 132 LEU 222 A MET 223 n 133 MET 223 A LYS 224 n 134 LYS 224 A SER 225 n 135 SER 225 A ALA 226 n 136 ALA 226 A ARG 227 n 137 ARG 227 A ASN 228 n 138 ASN 228 A SER 229 n 139 SER 229 A CYS 230 n 140 CYS 230 A TRP 231 n 141 TRP 231 A SER 232 n 142 SER 232 A LYS 233 n 143 LYS 233 A ASP 234 n 144 ASP 234 A ALA 235 n 145 ALA 235 A GLU 236 n 146 GLU 236 A TYR 237 n 147 TYR 237 A GLY 238 n 148 GLY 238 A LEU 239 n 149 LEU 239 A TYR 240 n 150 TYR 240 A SER 241 n 151 SER 241 A ILE 242 n 152 ILE 242 A TYR 243 n 153 TYR 243 A GLN 244 n 154 GLN 244 A GLY 245 n 155 GLY 245 A GLY 246 n 156 GLY 246 A ILE 247 n 157 ILE 247 A PHE 248 n 158 PHE 248 A GLU 249 n 159 GLU 249 A LEU 250 n 160 LEU 250 A LYS 251 n 161 LYS 251 A GLU 252 n 162 GLU 252 A ASN 253 n 163 ASN 253 A ASP 254 n 164 ASP 254 A ARG 255 n 165 ARG 255 A ILE 256 n 166 ILE 256 A PHE 257 n 167 PHE 257 A VAL 258 n 168 VAL 258 A SER 259 n 169 SER 259 A VAL 260 n 170 VAL 260 A THR 261 n 171 THR 261 A ASN 262 n 172 ASN 262 A GLU 263 n 173 GLU 263 A HIS 264 n 174 HIS 264 A LEU 265 n 175 LEU 265 A ILE 266 n 176 ILE 266 A ASP 267 n 177 ASP 267 A MET 268 n 178 MET 268 A ASP 269 n 179 ASP 269 A HIS 270 n 180 HIS 270 A GLU 271 n 181 GLU 271 A ALA 272 n 182 ALA 272 A SER 273 n 183 SER 273 A PHE 274 n 184 PHE 274 A PHE 275 n 185 PHE 275 A GLY 276 n 186 GLY 276 A ALA 277 n 187 ALA 277 A PHE 278 n 188 PHE 278 A LEU 279 n 189 LEU 279 A VAL 280 n 190 VAL 280 A GLY 281 n 191 GLY 281 A 0.1320000 0.1880000 10.0 10.0 29975 author_and_software_defined_assembly PISA,PQS 3 trimeric 7730 -126 19360 A CYS 230 A SG CYS 140 1_555 A ZN 300 B ZN ZN 1_555 A CYS 230 A SG CYS 140 3_555 111.7 A CYS 230 A SG CYS 140 1_555 A ZN 300 B ZN ZN 1_555 A CYS 230 A SG CYS 140 2_555 111.7 A CYS 230 A SG CYS 140 3_555 A ZN 300 B ZN ZN 1_555 A CYS 230 A SG CYS 140 2_555 111.7 A CYS 230 A SG CYS 140 1_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 1_555 107.1 A CYS 230 A SG CYS 140 3_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 1_555 107.1 A CYS 230 A SG CYS 140 2_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 1_555 107.1 A CYS 230 A SG CYS 140 1_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 2_555 107.1 A CYS 230 A SG CYS 140 3_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 2_555 107.1 A CYS 230 A SG CYS 140 2_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 2_555 107.1 A CL 406 C CL CL 1_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 2_555 0.0 A CYS 230 A SG CYS 140 1_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 3_555 107.1 A CYS 230 A SG CYS 140 3_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 3_555 107.1 A CYS 230 A SG CYS 140 2_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 3_555 107.1 A CL 406 C CL CL 1_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 3_555 0.0 A CL 406 C CL CL 2_555 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 3_555 0.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 250 A N LEU 160 A O GLY 180 A O GLY 90 A O TYR 189 A O TYR 99 A N ASP 267 A N ASP 177 A N LEU 250 A N LEU 160 A O GLY 180 A O GLY 90 A O GLN 187 A O GLN 97 A N PHE 274 A N PHE 184 A O ALA 277 A O ALA 187 A N ALA 124 A N ALA 34 A N HIS 125 A N HIS 35 A O PHE 163 A O PHE 73 A O ARG 227 A O ARG 137 A N MET 206 A N MET 116 A N TYR 213 A N TYR 123 A O ARG 255 A O ARG 165 A O VAL 260 A O VAL 170 A N ARG 149 A N ARG 59 A O ARG 227 A O ARG 137 A N MET 206 A N MET 116 A N TYR 213 A N TYR 123 A O ARG 255 A O ARG 165 A N ILE 256 A N ILE 166 A O LEU 174 A O LEU 84 A N VAL 175 A N VAL 85 A O HIS 168 A O HIS 78 1 A ZN 300 B ZN 1 A CL 406 C CL 1 A HOH 410 D HOH 1 A HOH 433 D HOH 1 A HOH 465 D HOH 1 A HOH 559 D HOH 1 A HOH 565 D HOH 1 A HOH 593 D HOH 1 A HOH 603 D HOH 1 A HOH 611 D HOH 1 A MET 91 A MET 1 1 Y 1 A ILE 92 A ILE 2 1 Y 1 A LEU 93 A LEU 3 1 Y 1 A ARG 94 A ARG 4 1 Y 1 A THR 95 A THR 5 1 Y 1 A SER 96 A SER 6 1 Y 1 A GLU 97 A GLU 7 1 Y 1 A GLU 98 A GLU 8 1 Y 1 A THR 99 A THR 9 1 Y 1 A ILE 100 A ILE 10 1 Y 1 A SER 101 A SER 11 1 Y 1 A THR 102 A THR 12 1 Y 1 A VAL 103 A VAL 13 1 Y 1 A GLN 104 A GLN 14 1 Y 1 A GLU 105 A GLU 15 1 Y 1 A LYS 106 A LYS 16 1 Y 1 A GLN 107 A GLN 17 1 Y 1 A GLN 108 A GLN 18 1 Y 1 A ASN 109 A ASN 19 1 Y 1 A ILE 110 A ILE 20 1 Y 1 A SER 111 A SER 21 1 Y 1 A PRO 112 A PRO 22 1 Y 1 A LEU 113 A LEU 23 1 Y 1 A VAL 114 A VAL 24 1 Y 1 A ARG 115 A ARG 25 1 Y 1 A GLU 116 A GLU 26 1 Y 1 A ARG 117 A ARG 27 1 Y 1 A GLY 118 A GLY 28 1 Y 1 A PRO 119 A PRO 29 1 Y 1 A GLY 131 A GLY 41 1 Y 1 A ARG 132 A ARG 42 1 Y 1 A SER 133 A SER 43 1 Y 1 A ASN 134 A ASN 44 1 Y 1 A THR 135 A THR 45 1 Y 1 A LEU 136 A LEU 46 1 Y 1 A SER 137 A SER 47 1 Y 1 A SER 138 A SER 48 1 Y 1 A PRO 139 A PRO 49 1 Y 1 A ASN 140 A ASN 50 1 Y 1 A SER 141 A SER 51 1 Y 1 A GLU 195 A GLU 105 1 Y 1 A ILE 196 A ILE 106 1 Y 1 A THR 200 22.27 1 A A GLY HIS 160 161 146.78 1 -3.42 0.50 120.30 116.88 A A A NE CZ NH1 ARG ARG ARG 121 121 121 N 1 -5.05 0.50 120.30 115.25 A A A NE CZ NH1 ARG ARG ARG 149 149 149 N 1 -17.04 1.60 122.70 105.66 A A A O C N GLY GLY HIS 160 160 161 Y 1 -31.94 2.50 121.70 89.76 A A A C N CA GLY HIS HIS 160 161 161 Y 1 3.32 0.50 120.30 123.62 A A A NE CZ NH1 ARG ARG ARG 191 191 191 N 1 -9.67 1.60 122.70 113.03 A A A O C N THR THR LYS 200 200 201 Y 1 -4.81 0.50 120.30 115.49 A A A NE CZ NH2 ARG ARG ARG 227 227 227 B B B N 1 12.87 2.10 111.80 124.67 A A A CG CD NE ARG ARG ARG 255 255 255 N 1 14.20 1.40 123.60 137.80 A A A CD NE CZ ARG ARG ARG 255 255 255 N 1 5.00 0.50 120.30 125.30 A A A NE CZ NH2 ARG ARG ARG 255 255 255 N 1 A A CA C GLY GLY 160 160 -0.099 0.016 1.514 1.415 N 1 A ARG 121 51.69 71.03 1 A ASN 202 42.69 26.60 1 A THR 214 -132.45 -153.66 USED CONJUGANT GRADIENT LEAST SQUARES AND ANISOTROPIC B-FACTOR REFINEMENT 0.1970000 0.1410000 0.1410000 1.30 20.0 13240 3346 41840 40934 16022 100 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT truncated model of tnfa pdb code 1tnf ENGH & HUBER Moews & Krestsinger, J.MOL.BIOL.91(1973)201-228 5 0.0 1452.0 1.30 20.0 226 1460 2 0 1232 0.014 2.53 12.5 1.3 20.0 1DG6 41901 41840 0 -3.0 6.4000000 1 12.4 12.1 100 1.30 1.35 34.0000000 1 4.5 100 phasing AMoRE refinement SHELXL-97 data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF APO2L/TRAIL 1 N N 2 N N 3 N N 4 N N A ASN 262 A ASN 172 HELX_P A HIS 264 A HIS 174 5 1 3 metalc 2.340 A CYS 230 A SG CYS 140 1_555 A ZN 300 B ZN ZN 1_555 metalc 2.340 A CYS 230 A SG CYS 140 3_555 A ZN 300 B ZN ZN 1_555 metalc 2.340 A CYS 230 A SG CYS 140 2_555 A ZN 300 B ZN ZN 1_555 metalc 2.340 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 1_555 metalc 2.340 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 2_555 metalc 2.340 A ZN 300 B ZN ZN 1_555 A CL 406 C CL CL 3_555 APOPTOSIS CYTOKINE, TNF, TRIMER, ZINC-BINDING SITE, APOPTOSIS TNF10_HUMAN UNP 1 P50591 91 281 1DG6 91 281 P50591 A 1 1 191 1 ASP engineered mutation ALA 218 1DG6 A P50591 UNP 218 128 3 5 4 5 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 237 A TYR 147 A LEU 250 A LEU 160 A GLY 180 A GLY 90 A GLN 193 A GLN 103 A ILE 266 A ILE 176 A ASP 267 A ASP 177 A TYR 237 A TYR 147 A LEU 250 A LEU 160 A GLY 180 A GLY 90 A GLN 193 A GLN 103 A PHE 274 A PHE 184 A LEU 279 A LEU 189 A ALA 123 A ALA 33 A THR 127 A THR 37 A PHE 163 A PHE 73 A SER 165 A SER 75 A ILE 220 A ILE 130 A ASN 228 A ASN 138 A GLN 205 A GLN 115 A TYR 213 A TYR 123 A ARG 255 A ARG 165 A VAL 260 A VAL 170 A ARG 149 A ARG 59 A LYS 150 A LYS 60 A ILE 220 A ILE 130 A ASN 228 A ASN 138 A GLN 205 A GLN 115 A TYR 213 A TYR 123 A ARG 255 A ARG 165 A VAL 260 A VAL 170 A GLU 173 A GLU 83 A ILE 176 A ILE 86 A LEU 167 A LEU 77 A ARG 170 A ARG 80 BINDING SITE FOR RESIDUE ZN A 300 A ZN 300 Software 6 BINDING SITE FOR RESIDUE CL A 406 A CL 406 Software 6 A CYS 230 A CYS 140 6 2_555 A CYS 230 A CYS 140 6 3_555 A CYS 230 A CYS 140 6 1_555 A CL 406 C CL 6 2_555 A CL 406 C CL 6 3_555 A CL 406 C CL 6 1_555 A CYS 230 A CYS 140 6 2_555 A CYS 230 A CYS 140 6 3_555 A CYS 230 A CYS 140 6 1_555 A ZN 300 B ZN 6 2_555 A ZN 300 B ZN 6 3_555 A ZN 300 B ZN 6 1_555 155 H 3 2