0.017047 0.000000 0.000000 0.000000 0.017047 0.000000 0.000000 0.000000 0.011539 0.00000 0.00000 0.00000 Koenig, P. Richmond, T.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 58.660 58.660 86.660 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N O N 75 N P N 76 N O N 77 N O N 78 N O N 79 N C N 80 R C N 81 N O N 82 S C N 83 N O N 84 N C N 85 R C Y 86 N N Y 87 N C Y 88 N N Y 89 N C Y 90 N C N 91 N N Y 92 N N Y 93 N C Y 94 N N Y 95 N C N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 N C N 121 R C N 122 N N N 123 N C N 124 N O N 125 N N N 126 N C N 127 N N N 128 N C N 129 N C N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N P N 146 N O N 147 N O N 148 N O N 149 N C N 150 R C N 151 N O N 152 S C N 153 N O N 154 N C N 155 R C Y 156 N N Y 157 N C Y 158 N N Y 159 N C N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N N Y 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C N 193 N N N 194 N C N 195 N O N 196 N N N 197 N C N 198 N O N 199 N C N 200 N C N 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N C N 224 N O N 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C N 242 N C N 243 N C N 244 N O N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N N N 257 N C N 258 N C N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N N Y 273 N C Y 274 N C Y 275 N N N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 S C N 292 N C N 293 N C N 294 N C N 295 N O N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C N 314 N C N 315 N C N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N C N 337 N C N 338 N C N 339 N N N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 N C N 361 N C N 362 N S N 363 N C N 364 N O N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C N 381 N C N 382 N C N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N O N 399 N O N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 R C N 412 N O N 413 N C N 414 N O N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N N N 425 S C N 426 N C N 427 N O N 428 N C Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C Y 434 N C N 435 N O N 436 N O N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N N N 449 S C N 450 N C N 451 N O N 452 N C N 453 N C N 454 N C N 455 N O N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing Y 93 N sing Y 94 N sing Y 95 N doub N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N doub N 102 N sing N 103 N sing Y 104 N sing Y 105 N doub N 106 N sing Y 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing Y 166 N sing Y 167 N sing Y 168 N doub N 169 N sing Y 170 N sing N 171 N sing Y 172 N doub N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N doub N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N doub N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N doub N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing Y 276 N sing Y 277 N doub Y 278 N doub N 279 N sing Y 280 N sing N 281 N sing Y 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N doub N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N doub N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N doub N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N doub N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N doub N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N doub N 424 N sing N 425 N sing N 426 N sing N 427 N sing Y 428 N doub Y 429 N sing Y 430 N sing N 431 N sing Y 432 N doub N 433 N sing Y 434 N doub N 435 N sing Y 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 233 139 154 10.1006/jmbi.1993.1490 8377181 The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility. 1993 10.2210/pdb1dgc/pdb pdb_00001dgc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5820.771 DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3') 1 syn polymer 7244.369 PROTEIN (GCN4) 1 nat polymer no no (DT)(DG)(DG)(DA)(DG)(DA)(DT)(DG)(DA)(DC)(DG)(DT)(DC)(DA)(DT)(DC)(DT)(DC)(DC) TGGAGATGACGTCATCTCC B polydeoxyribonucleotide no no IVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER IVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n baker's yeast Saccharomyces sample 4932 Saccharomyces cerevisiae 2.80 1.2800 56.14 VAPOR DIFFUSION, HANGING DROP 5.25 pH 5.25, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K 277.00 WATER 1 PEG 6000 1 NA CITRATE 1 CACL2 1 WATER 2 PEG 6000 2 NA CITRATE 2 CACL2 2 -14.909 1 19 B -9 B 9 -8.374 B_DG-9:DC9_B 1 -2.446 0.107 -0.638 -0.504 0.953 1 19 B -8 B 8 -1.912 B_DG-8:DC8_B 2 -17.066 -0.472 0.337 -0.713 -0.579 1 20 B -7 B 7 -7.493 B_DA-7:DT7_B 3 -10.974 -0.223 -0.358 -0.469 7.442 1 19 B -6 B 6 -1.487 B_DG-6:DC6_B 4 -8.964 -0.367 0.218 -0.352 2.703 1 20 B -5 B 5 1.091 B_DA-5:DT5_B 5 -6.380 0.163 0.685 -0.307 2.271 1 20 B -4 B 4 -0.024 B_DT-4:DA4_B 6 -1.735 0.246 0.099 -0.191 5.628 1 19 B -3 B 3 -3.886 B_DG-3:DC3_B 7 -10.251 0.089 0.022 -0.412 6.563 1 20 B -2 B 2 -3.067 B_DA-2:DT2_B 8 -13.009 -0.208 -0.153 -0.297 -2.429 1 19 B -1 B 1 0.862 B_DC-1:DG1_B 9 -16.490 -0.430 0.245 -0.237 2.429 1 19 B 1 B -1 0.862 B_DG1:DC-1_B 10 -16.490 0.430 0.245 -0.237 -6.563 1 20 B 2 B -2 -3.067 B_DT2:DA-2_B 11 -13.009 0.208 -0.153 -0.297 -5.628 1 19 B 3 B -3 -3.886 B_DC3:DG-3_B 12 -10.251 -0.089 0.022 -0.412 -2.271 1 20 B 4 B -4 -0.024 B_DA4:DT-4_B 13 -1.735 -0.246 0.099 -0.191 -2.703 1 20 B 5 B -5 1.091 B_DT5:DA-5_B 14 -6.380 -0.163 0.685 -0.307 -7.442 1 19 B 6 B -6 -1.487 B_DC6:DG-6_B 15 -8.964 0.367 0.218 -0.352 0.579 1 20 B 7 B -7 -7.493 B_DT7:DA-7_B 16 -10.974 0.223 -0.358 -0.469 -0.953 1 19 B 8 B -8 -1.912 B_DC8:DG-8_B 17 -17.066 0.472 0.337 -0.713 14.909 1 19 B 9 B -9 -8.374 B_DC9:DG-9_B 18 -2.446 -0.107 -0.638 -0.504 2.742 34.661 B B -9 -8 0.980 B B 9 8 3.147 0.573 0.720 0.859 BB_DG-9DG-8:DC8DC9_BB 1 -11.859 20.292 32.623 1.360 -2.901 3.352 37.202 B B -8 -7 6.396 B B 8 7 3.457 4.062 -0.586 0.131 BB_DG-8DA-7:DT7DC8_BB 2 4.785 -7.533 36.687 -0.361 1.586 3.075 30.612 B B -7 -6 11.283 B B 7 6 3.245 5.892 0.132 -0.222 BB_DA-7DG-6:DC6DT7_BB 3 -5.304 10.157 29.591 -1.566 -1.280 3.416 43.813 B B -6 -5 -2.270 B B 6 5 3.440 -1.690 0.062 -0.165 BB_DG-6DA-5:DT5DC6_BB 4 -5.074 6.815 43.501 -0.052 -0.591 3.446 30.342 B B -5 -4 -1.693 B B 5 4 3.463 -0.883 -0.073 -0.912 BB_DA-5DT-4:DA4DT5_BB 5 4.156 -7.966 30.050 -1.554 1.028 3.156 39.765 B B -4 -3 11.610 B B 4 3 3.112 7.846 -0.671 0.378 BB_DT-4DG-3:DC3DA4_BB 6 -1.997 2.955 38.965 -0.327 0.763 3.288 31.394 B B -3 -2 17.107 B B 3 2 3.458 9.124 0.111 -0.098 BB_DG-3DA-2:DT2DC3_BB 7 1.836 -3.443 30.015 -1.990 0.160 3.595 31.423 B B -2 -1 -3.611 B B 2 1 3.595 -1.949 0.042 -0.699 BB_DA-2DC-1:DG1DT2_BB 8 -4.188 7.760 31.090 -0.886 -0.945 3.325 39.394 B B -1 1 21.818 B B 1 -1 3.465 14.392 0.000 0.233 BB_DC-1DG1:DC-1DG1_BB 9 0.000 0.000 36.768 -1.490 0.000 3.595 31.423 B B 1 2 -3.611 B B -1 -2 3.595 -1.949 -0.042 -0.699 BB_DG1DT2:DA-2DC-1_BB 10 4.188 -7.760 31.090 -0.886 0.945 3.288 31.394 B B 2 3 17.107 B B -2 -3 3.458 9.124 -0.111 -0.098 BB_DT2DC3:DG-3DA-2_BB 11 -1.836 3.443 30.015 -1.990 -0.160 3.156 39.765 B B 3 4 11.610 B B -3 -4 3.112 7.846 0.671 0.378 BB_DC3DA4:DT-4DG-3_BB 12 1.997 -2.955 38.965 -0.327 -0.763 3.446 30.343 B B 4 5 -1.693 B B -4 -5 3.463 -0.883 0.073 -0.912 BB_DA4DT5:DA-5DT-4_BB 13 -4.157 7.966 30.050 -1.554 -1.028 3.416 43.813 B B 5 6 -2.270 B B -5 -6 3.440 -1.690 -0.062 -0.165 BB_DT5DC6:DG-6DA-5_BB 14 5.074 -6.815 43.501 -0.052 0.591 3.075 30.612 B B 6 7 11.283 B B -6 -7 3.245 5.892 -0.132 -0.222 BB_DC6DT7:DA-7DG-6_BB 15 5.304 -10.157 29.591 -1.566 1.280 3.352 37.202 B B 7 8 6.396 B B -7 -8 3.457 4.062 0.586 0.131 BB_DT7DC8:DG-8DA-7_BB 16 -4.785 7.533 36.687 -0.361 -1.586 2.742 34.661 B B 8 9 0.980 B B -8 -9 3.147 0.573 -0.720 0.859 BB_DC8DC9:DG-9DG-8_BB 17 11.859 -20.292 32.623 1.360 2.901 chem_comp_atom chem_comp_bond database_2 repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 1994-06-22 1 1 2008-05-22 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession BNL Y BNL 1993-07-15 REL AMINO ACIDS NUMBERING (RESIDUE NUMBER) CORRESPONDS TO THE 281 AMINO ACIDS OF INTACT GCN4. T -10 n 1 DT -10 B G -9 n 2 DG -9 B G -8 n 3 DG -8 B A -7 n 4 DA -7 B G -6 n 5 DG -6 B A -5 n 6 DA -5 B T -4 n 7 DT -4 B G -3 n 8 DG -3 B A -2 n 9 DA -2 B C -1 n 10 DC -1 B G 1 n 11 DG 1 B T 2 n 12 DT 2 B C 3 n 13 DC 3 B A 4 n 14 DA 4 B T 5 n 15 DT 5 B C 6 n 16 DC 6 B T 7 n 17 DT 7 B C 8 n 18 DC 8 B C 9 n 19 DC 9 B n 1 220 A n 2 221 A n 3 222 A n 4 223 A n 5 224 A n 6 225 A n 7 226 A PRO 227 n 8 PRO 227 A ALA 228 n 9 ALA 228 A ALA 229 n 10 ALA 229 A LEU 230 n 11 LEU 230 A LYS 231 n 12 LYS 231 A ARG 232 n 13 ARG 232 A ALA 233 n 14 ALA 233 A ARG 234 n 15 ARG 234 A ASN 235 n 16 ASN 235 A THR 236 n 17 THR 236 A GLU 237 n 18 GLU 237 A ALA 238 n 19 ALA 238 A ALA 239 n 20 ALA 239 A ARG 240 n 21 ARG 240 A ARG 241 n 22 ARG 241 A SER 242 n 23 SER 242 A ARG 243 n 24 ARG 243 A ALA 244 n 25 ALA 244 A ARG 245 n 26 ARG 245 A LYS 246 n 27 LYS 246 A LEU 247 n 28 LEU 247 A GLN 248 n 29 GLN 248 A ARG 249 n 30 ARG 249 A MET 250 n 31 MET 250 A LYS 251 n 32 LYS 251 A GLN 252 n 33 GLN 252 A LEU 253 n 34 LEU 253 A GLU 254 n 35 GLU 254 A ASP 255 n 36 ASP 255 A LYS 256 n 37 LYS 256 A VAL 257 n 38 VAL 257 A GLU 258 n 39 GLU 258 A GLU 259 n 40 GLU 259 A LEU 260 n 41 LEU 260 A LEU 261 n 42 LEU 261 A SER 262 n 43 SER 262 A LYS 263 n 44 LYS 263 A ASN 264 n 45 ASN 264 A TYR 265 n 46 TYR 265 A HIS 266 n 47 HIS 266 A LEU 267 n 48 LEU 267 A GLU 268 n 49 GLU 268 A ASN 269 n 50 ASN 269 A GLU 270 n 51 GLU 270 A VAL 271 n 52 VAL 271 A ALA 272 n 53 ALA 272 A ARG 273 n 54 ARG 273 A LEU 274 n 55 LEU 274 A LYS 275 n 56 LYS 275 A LYS 276 n 57 LYS 276 A LEU 277 n 58 LEU 277 A VAL 278 n 59 VAL 278 A GLY 279 n 60 GLY 279 A GLU 280 n 61 GLU 280 A ARG 281 n 62 ARG 281 A author_defined_assembly 4 tetrameric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 8_775 -y+2,-x+2,-z+1/2 crystal symmetry operation 117.3200000000 117.3200000000 43.3300000000 1 A ILE 220 B ILE 1 1 Y 1 A VAL 221 B VAL 2 1 Y 1 A PRO 222 B PRO 3 1 Y 1 A GLU 223 B GLU 4 1 Y 1 A SER 224 B SER 5 1 Y 1 A SER 225 B SER 6 1 Y 1 A ASP 226 B ASP 7 1 Y 1 -5.71 0.80 105.90 100.19 B B B O4' C1' C2' DT DT DT -10 -10 -10 N 1 3.66 0.60 119.00 122.66 B B B C4 C5 C7 DT DT DT -10 -10 -10 N 1 -5.49 0.60 122.90 117.41 B B B C6 C5 C7 DT DT DT -10 -10 -10 N 1 14.53 0.30 108.30 122.83 B B B O4' C1' N9 DG DG DG -9 -9 -9 N 1 15.02 1.60 120.90 135.92 B B B P O5' C5' DG DG DG -8 -8 -8 N 1 7.97 1.10 109.80 117.77 B B B C5' C4' O4' DG DG DG -8 -8 -8 N 1 2.35 0.30 108.30 110.65 B B B O4' C1' N9 DG DG DG -8 -8 -8 N 1 8.68 0.30 108.30 116.98 B B B O4' C1' N9 DA DA DA -5 -5 -5 N 1 11.36 1.20 119.70 131.06 B B B C3' O3' P DA DA DT -5 -5 -4 Y 1 -4.13 0.60 122.30 118.17 B B B N3 C2 O2 DT DT DT -4 -4 -4 N 1 -3.78 0.60 122.90 119.12 B B B C6 C5 C7 DT DT DT -4 -4 -4 N 1 -14.26 1.90 104.00 89.74 B B B O3' P O5' DT DG DG -4 -3 -3 Y 1 -12.13 1.80 114.10 101.97 B B B C5' C4' C3' DG DG DG -3 -3 -3 N 1 6.70 0.30 108.30 115.00 B B B O4' C1' N9 DG DG DG -3 -3 -3 N 1 3.70 0.30 108.30 112.00 B B B O4' C1' N9 DA DA DA -2 -2 -2 N 1 3.61 0.60 118.90 122.51 B B B N1 C2 O2 DC DC DC -1 -1 -1 N 1 14.13 1.20 119.70 133.83 B B B C3' O3' P DG DG DT 1 1 2 Y 1 -4.50 0.40 104.50 100.00 B B B O4' C4' C3' DT DT DT 2 2 2 N 1 -7.26 0.80 105.90 98.64 B B B O4' C1' C2' DT DT DT 2 2 2 N 1 -5.76 0.80 105.90 100.14 B B B O4' C1' C2' DC DC DC 3 3 3 N 1 7.66 0.30 108.30 115.96 B B B O4' C1' N1 DC DC DC 3 3 3 N 1 9.00 0.30 108.30 117.30 B B B O4' C1' N9 DA DA DA 4 4 4 N 1 9.92 1.10 109.80 119.72 B B B C5' C4' O4' DT DT DT 5 5 5 N 1 3.40 0.30 108.30 111.70 B B B O4' C1' N1 DT DT DT 5 5 5 N 1 4.29 0.60 118.00 122.29 B B B C4 C5 C6 DT DT DT 5 5 5 N 1 -6.04 0.60 122.30 116.26 B B B N3 C2 O2 DT DT DT 5 5 5 N 1 -3.74 0.60 122.90 119.16 B B B C6 C5 C7 DT DT DT 5 5 5 N 1 10.05 0.30 108.30 118.35 B B B O4' C1' N1 DC DC DC 6 6 6 N 1 4.52 0.60 118.90 123.42 B B B N1 C2 O2 DC DC DC 6 6 6 N 1 -4.29 0.70 121.90 117.61 B B B N3 C2 O2 DC DC DC 6 6 6 N 1 12.72 2.00 112.30 125.02 B B B C4' C3' O3' DT DT DT 7 7 7 N 1 6.61 0.30 108.30 114.91 B B B O4' C1' N1 DT DT DT 7 7 7 N 1 13.46 1.20 119.70 133.16 B B B C3' O3' P DT DT DC 7 7 8 Y 1 -11.60 1.90 112.60 101.00 B B B N1 C1' C2' DC DC DC 8 8 8 N 1 7.83 0.30 108.30 116.13 B B B O4' C1' N1 DC DC DC 8 8 8 N 1 8.57 1.40 114.30 122.87 B B B N1 C1' C2' DC DC DC 9 9 9 N 1 -13.92 0.70 108.00 94.08 B B B O4' C1' N1 DC DC DC 9 9 9 N 1 5.00 0.50 120.30 125.30 A A A NE CZ NH1 ARG ARG ARG 243 243 243 N 1 -4.07 0.50 120.30 116.23 A A A NE CZ NH2 ARG ARG ARG 243 243 243 N 1 -3.12 0.50 120.30 117.18 A A A NE CZ NH2 ARG ARG ARG 249 249 249 N 1 13.32 2.20 113.40 126.72 A A A CA CB CG LYS LYS LYS 256 256 256 N 1 B B C5' C4' DT DT -10 -10 0.056 0.007 1.512 1.568 N 1 B B P O5' DG DG -9 -9 0.079 0.010 1.593 1.672 N 1 B B C5' C4' DG DG -9 -9 0.073 0.007 1.512 1.585 N 1 B B C5' C4' DG DG -8 -8 0.068 0.007 1.512 1.580 N 1 B B C5 C7 DT DT -4 -4 0.038 0.006 1.496 1.534 N 1 B B C6 N1 DG DG -3 -3 -0.045 0.007 1.391 1.346 N 1 B B C5' C4' DT DT 5 5 0.050 0.007 1.512 1.562 N 1 B B C6 N1 DT DT 5 5 -0.052 0.007 1.378 1.326 N 1 B B P O5' DC DC 6 6 0.110 0.010 1.593 1.703 N 1 B B C5' C4' DC DC 6 6 0.050 0.007 1.512 1.562 N 1 B B C5 C7 DT DT 7 7 0.040 0.006 1.496 1.536 N 1 A ALA 229 -27.35 -48.66 1 A LEU 277 178.94 -39.80 1 A GLU 280 161.99 -13.76 0.2160000 0.2160000 3.000 10.000 3296 98.200 1 3.000 3.000 10.000 0 842 0 386 456 0.020 3.86 3.000 20.000 1DGC 1 refinement X-PLOR THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY 1 N N 2 N N THE ASYMMETRIC UNIT CONTAINS ONE HALF OF PROTEIN/DNA COMPLEX PER ASYMMETRIC UNIT. MOLECULAR DYAD AXIS OF PROTEIN DIMER AND PALINDROMIC HALF SITES OF THE DNA COINCIDES WITH CRYSTALLOGRAPHIC TWO-FOLD AXIS. THE FULL PROTEIN/DNA COMPLEX CAN BE OBTAINED BY APPLYING THE FOLLOWING TRANSFORMATION MATRIX AND TRANSLATION VECTOR TO THE COORDINATES X Y Z: 0 -1 0 X 117.32 X SYMM -1 0 0 Y + 117.32 = Y SYMM 0 0 -1 Z 43.33 Z SYMM A ALA 228 B ALA 9 HELX_P A LYS 276 B LYS 57 1 A 49 hydrog WATSON-CRICK B DG -9 A N1 DG 2 1_555 B DC 9 A N3 DC 19 8_775 hydrog WATSON-CRICK B DG -9 A N2 DG 2 1_555 B DC 9 A O2 DC 19 8_775 hydrog WATSON-CRICK B DG -9 A O6 DG 2 1_555 B DC 9 A N4 DC 19 8_775 hydrog WATSON-CRICK B DG -8 A N1 DG 3 1_555 B DC 8 A N3 DC 18 8_775 hydrog WATSON-CRICK B DG -8 A N2 DG 3 1_555 B DC 8 A O2 DC 18 8_775 hydrog WATSON-CRICK B DG -8 A O6 DG 3 1_555 B DC 8 A N4 DC 18 8_775 hydrog WATSON-CRICK B DA -7 A N1 DA 4 1_555 B DT 7 A N3 DT 17 8_775 hydrog WATSON-CRICK B DA -7 A N6 DA 4 1_555 B DT 7 A O4 DT 17 8_775 hydrog WATSON-CRICK B DG -6 A N1 DG 5 1_555 B DC 6 A N3 DC 16 8_775 hydrog WATSON-CRICK B DG -6 A N2 DG 5 1_555 B DC 6 A O2 DC 16 8_775 hydrog WATSON-CRICK B DG -6 A O6 DG 5 1_555 B DC 6 A N4 DC 16 8_775 hydrog WATSON-CRICK B DA -5 A N1 DA 6 1_555 B DT 5 A N3 DT 15 8_775 hydrog WATSON-CRICK B DA -5 A N6 DA 6 1_555 B DT 5 A O4 DT 15 8_775 hydrog WATSON-CRICK B DT -4 A N3 DT 7 1_555 B DA 4 A N1 DA 14 8_775 hydrog WATSON-CRICK B DT -4 A O4 DT 7 1_555 B DA 4 A N6 DA 14 8_775 hydrog WATSON-CRICK B DG -3 A N1 DG 8 1_555 B DC 3 A N3 DC 13 8_775 hydrog WATSON-CRICK B DG -3 A N2 DG 8 1_555 B DC 3 A O2 DC 13 8_775 hydrog WATSON-CRICK B DG -3 A O6 DG 8 1_555 B DC 3 A N4 DC 13 8_775 hydrog WATSON-CRICK B DA -2 A N1 DA 9 1_555 B DT 2 A N3 DT 12 8_775 hydrog WATSON-CRICK B DA -2 A N6 DA 9 1_555 B DT 2 A O4 DT 12 8_775 hydrog WATSON-CRICK B DC -1 A N3 DC 10 1_555 B DG 1 A N1 DG 11 8_775 hydrog WATSON-CRICK B DC -1 A N4 DC 10 1_555 B DG 1 A O6 DG 11 8_775 hydrog WATSON-CRICK B DC -1 A O2 DC 10 1_555 B DG 1 A N2 DG 11 8_775 hydrog WATSON-CRICK B DG 1 A N1 DG 11 1_555 B DC -1 A N3 DC 10 8_775 hydrog WATSON-CRICK B DG 1 A N2 DG 11 1_555 B DC -1 A O2 DC 10 8_775 hydrog WATSON-CRICK B DG 1 A O6 DG 11 1_555 B DC -1 A N4 DC 10 8_775 hydrog WATSON-CRICK B DT 2 A N3 DT 12 1_555 B DA -2 A N1 DA 9 8_775 hydrog WATSON-CRICK B DT 2 A O4 DT 12 1_555 B DA -2 A N6 DA 9 8_775 hydrog WATSON-CRICK B DC 3 A N3 DC 13 1_555 B DG -3 A N1 DG 8 8_775 hydrog WATSON-CRICK B DC 3 A N4 DC 13 1_555 B DG -3 A O6 DG 8 8_775 hydrog WATSON-CRICK B DC 3 A O2 DC 13 1_555 B DG -3 A N2 DG 8 8_775 hydrog WATSON-CRICK B DA 4 A N1 DA 14 1_555 B DT -4 A N3 DT 7 8_775 hydrog WATSON-CRICK B DA 4 A N6 DA 14 1_555 B DT -4 A O4 DT 7 8_775 hydrog WATSON-CRICK B DT 5 A N3 DT 15 1_555 B DA -5 A N1 DA 6 8_775 hydrog WATSON-CRICK B DT 5 A O4 DT 15 1_555 B DA -5 A N6 DA 6 8_775 hydrog WATSON-CRICK B DC 6 A N3 DC 16 1_555 B DG -6 A N1 DG 5 8_775 hydrog WATSON-CRICK B DC 6 A N4 DC 16 1_555 B DG -6 A O6 DG 5 8_775 hydrog WATSON-CRICK B DC 6 A O2 DC 16 1_555 B DG -6 A N2 DG 5 8_775 hydrog WATSON-CRICK B DT 7 A N3 DT 17 1_555 B DA -7 A N1 DA 4 8_775 hydrog WATSON-CRICK B DT 7 A O4 DT 17 1_555 B DA -7 A N6 DA 4 8_775 hydrog WATSON-CRICK B DC 8 A N3 DC 18 1_555 B DG -8 A N1 DG 3 8_775 hydrog WATSON-CRICK B DC 8 A N4 DC 18 1_555 B DG -8 A O6 DG 3 8_775 hydrog WATSON-CRICK B DC 8 A O2 DC 18 1_555 B DG -8 A N2 DG 3 8_775 hydrog WATSON-CRICK B DC 9 A N3 DC 19 1_555 B DG -9 A N1 DG 2 8_775 hydrog WATSON-CRICK B DC 9 A N4 DC 19 1_555 B DG -9 A O6 DG 2 8_775 hydrog WATSON-CRICK B DC 9 A O2 DC 19 1_555 B DG -9 A N2 DG 2 8_775 TRANSCRIPTION/DNA PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX GCN4_YEAST UNP 2 P03069 1DGC PDB 1 1DGC 220 281 1DGC 220 281 P03069 A 1 1 62 -10 9 1DGC -10 9 1DGC B 2 1 19 92 P 41 21 2