0.017047
0.000000
0.000000
0.000000
0.017047
0.000000
0.000000
0.000000
0.011539
0.00000
0.00000
0.00000
Koenig, P.
Richmond, T.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.660
58.660
86.660
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
O
N
75
N
P
N
76
N
O
N
77
N
O
N
78
N
O
N
79
N
C
N
80
R
C
N
81
N
O
N
82
S
C
N
83
N
O
N
84
N
C
N
85
R
C
Y
86
N
N
Y
87
N
C
Y
88
N
N
Y
89
N
C
Y
90
N
C
N
91
N
N
Y
92
N
N
Y
93
N
C
Y
94
N
N
Y
95
N
C
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
O
N
111
N
P
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
C
N
116
R
C
N
117
N
O
N
118
S
C
N
119
N
O
N
120
N
C
N
121
R
C
N
122
N
N
N
123
N
C
N
124
N
O
N
125
N
N
N
126
N
C
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
P
N
146
N
O
N
147
N
O
N
148
N
O
N
149
N
C
N
150
R
C
N
151
N
O
N
152
S
C
N
153
N
O
N
154
N
C
N
155
R
C
Y
156
N
N
Y
157
N
C
Y
158
N
N
Y
159
N
C
N
160
N
C
N
161
N
O
N
162
N
N
N
163
N
C
N
164
N
N
N
165
N
N
Y
166
N
C
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
O
N
182
N
P
N
183
N
O
N
184
N
O
N
185
N
O
N
186
N
C
N
187
R
C
N
188
N
O
N
189
S
C
N
190
N
O
N
191
N
C
N
192
R
C
N
193
N
N
N
194
N
C
N
195
N
O
N
196
N
N
N
197
N
C
N
198
N
O
N
199
N
C
N
200
N
C
N
201
N
C
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
N
N
226
N
O
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
O
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
N
N
267
S
C
N
268
N
C
N
269
N
O
N
270
N
C
Y
271
N
C
Y
272
N
N
Y
273
N
C
Y
274
N
C
Y
275
N
N
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
S
C
N
292
N
C
N
293
N
C
N
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
N
N
310
S
C
N
311
N
C
N
312
N
O
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
C
N
339
N
N
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
N
N
357
S
C
N
358
N
C
N
359
N
O
N
360
N
C
N
361
N
C
N
362
N
S
N
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
O
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
R
C
N
412
N
O
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
Y
433
N
C
Y
434
N
C
N
435
N
O
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
N
N
449
S
C
N
450
N
C
N
451
N
O
N
452
N
C
N
453
N
C
N
454
N
C
N
455
N
O
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
Y
93
N
sing
Y
94
N
sing
Y
95
N
doub
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
doub
N
102
N
sing
N
103
N
sing
Y
104
N
sing
Y
105
N
doub
N
106
N
sing
Y
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
Y
166
N
sing
Y
167
N
sing
Y
168
N
doub
N
169
N
sing
Y
170
N
sing
N
171
N
sing
Y
172
N
doub
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
doub
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
doub
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
doub
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
Y
276
N
sing
Y
277
N
doub
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
Y
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
doub
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
doub
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
doub
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
doub
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
doub
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
Y
428
N
doub
Y
429
N
sing
Y
430
N
sing
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
doub
N
435
N
sing
Y
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
doub
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
233
139
154
10.1006/jmbi.1993.1490
8377181
The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility.
1993
10.2210/pdb1dgc/pdb
pdb_00001dgc
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
5820.771
DNA (5'-D(*TP*GP*GP*AP*GP*AP*TP*GP*AP*CP*GP*TP*CP*AP*TP*CP*T P*CP*C)-3')
1
syn
polymer
7244.369
PROTEIN (GCN4)
1
nat
polymer
no
no
(DT)(DG)(DG)(DA)(DG)(DA)(DT)(DG)(DA)(DC)(DG)(DT)(DC)(DA)(DT)(DC)(DT)(DC)(DC)
TGGAGATGACGTCATCTCC
B
polydeoxyribonucleotide
no
no
IVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER
IVPESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
baker's yeast
Saccharomyces
sample
4932
Saccharomyces cerevisiae
2.80
1.2800
56.14
VAPOR DIFFUSION, HANGING DROP
5.25
pH 5.25, VAPOR DIFFUSION, HANGING DROP, temperature 277.00K
277.00
WATER
1
PEG 6000
1
NA CITRATE
1
CACL2
1
WATER
2
PEG 6000
2
NA CITRATE
2
CACL2
2
-14.909
1
19
B
-9
B
9
-8.374
B_DG-9:DC9_B
1
-2.446
0.107
-0.638
-0.504
0.953
1
19
B
-8
B
8
-1.912
B_DG-8:DC8_B
2
-17.066
-0.472
0.337
-0.713
-0.579
1
20
B
-7
B
7
-7.493
B_DA-7:DT7_B
3
-10.974
-0.223
-0.358
-0.469
7.442
1
19
B
-6
B
6
-1.487
B_DG-6:DC6_B
4
-8.964
-0.367
0.218
-0.352
2.703
1
20
B
-5
B
5
1.091
B_DA-5:DT5_B
5
-6.380
0.163
0.685
-0.307
2.271
1
20
B
-4
B
4
-0.024
B_DT-4:DA4_B
6
-1.735
0.246
0.099
-0.191
5.628
1
19
B
-3
B
3
-3.886
B_DG-3:DC3_B
7
-10.251
0.089
0.022
-0.412
6.563
1
20
B
-2
B
2
-3.067
B_DA-2:DT2_B
8
-13.009
-0.208
-0.153
-0.297
-2.429
1
19
B
-1
B
1
0.862
B_DC-1:DG1_B
9
-16.490
-0.430
0.245
-0.237
2.429
1
19
B
1
B
-1
0.862
B_DG1:DC-1_B
10
-16.490
0.430
0.245
-0.237
-6.563
1
20
B
2
B
-2
-3.067
B_DT2:DA-2_B
11
-13.009
0.208
-0.153
-0.297
-5.628
1
19
B
3
B
-3
-3.886
B_DC3:DG-3_B
12
-10.251
-0.089
0.022
-0.412
-2.271
1
20
B
4
B
-4
-0.024
B_DA4:DT-4_B
13
-1.735
-0.246
0.099
-0.191
-2.703
1
20
B
5
B
-5
1.091
B_DT5:DA-5_B
14
-6.380
-0.163
0.685
-0.307
-7.442
1
19
B
6
B
-6
-1.487
B_DC6:DG-6_B
15
-8.964
0.367
0.218
-0.352
0.579
1
20
B
7
B
-7
-7.493
B_DT7:DA-7_B
16
-10.974
0.223
-0.358
-0.469
-0.953
1
19
B
8
B
-8
-1.912
B_DC8:DG-8_B
17
-17.066
0.472
0.337
-0.713
14.909
1
19
B
9
B
-9
-8.374
B_DC9:DG-9_B
18
-2.446
-0.107
-0.638
-0.504
2.742
34.661
B
B
-9
-8
0.980
B
B
9
8
3.147
0.573
0.720
0.859
BB_DG-9DG-8:DC8DC9_BB
1
-11.859
20.292
32.623
1.360
-2.901
3.352
37.202
B
B
-8
-7
6.396
B
B
8
7
3.457
4.062
-0.586
0.131
BB_DG-8DA-7:DT7DC8_BB
2
4.785
-7.533
36.687
-0.361
1.586
3.075
30.612
B
B
-7
-6
11.283
B
B
7
6
3.245
5.892
0.132
-0.222
BB_DA-7DG-6:DC6DT7_BB
3
-5.304
10.157
29.591
-1.566
-1.280
3.416
43.813
B
B
-6
-5
-2.270
B
B
6
5
3.440
-1.690
0.062
-0.165
BB_DG-6DA-5:DT5DC6_BB
4
-5.074
6.815
43.501
-0.052
-0.591
3.446
30.342
B
B
-5
-4
-1.693
B
B
5
4
3.463
-0.883
-0.073
-0.912
BB_DA-5DT-4:DA4DT5_BB
5
4.156
-7.966
30.050
-1.554
1.028
3.156
39.765
B
B
-4
-3
11.610
B
B
4
3
3.112
7.846
-0.671
0.378
BB_DT-4DG-3:DC3DA4_BB
6
-1.997
2.955
38.965
-0.327
0.763
3.288
31.394
B
B
-3
-2
17.107
B
B
3
2
3.458
9.124
0.111
-0.098
BB_DG-3DA-2:DT2DC3_BB
7
1.836
-3.443
30.015
-1.990
0.160
3.595
31.423
B
B
-2
-1
-3.611
B
B
2
1
3.595
-1.949
0.042
-0.699
BB_DA-2DC-1:DG1DT2_BB
8
-4.188
7.760
31.090
-0.886
-0.945
3.325
39.394
B
B
-1
1
21.818
B
B
1
-1
3.465
14.392
0.000
0.233
BB_DC-1DG1:DC-1DG1_BB
9
0.000
0.000
36.768
-1.490
0.000
3.595
31.423
B
B
1
2
-3.611
B
B
-1
-2
3.595
-1.949
-0.042
-0.699
BB_DG1DT2:DA-2DC-1_BB
10
4.188
-7.760
31.090
-0.886
0.945
3.288
31.394
B
B
2
3
17.107
B
B
-2
-3
3.458
9.124
-0.111
-0.098
BB_DT2DC3:DG-3DA-2_BB
11
-1.836
3.443
30.015
-1.990
-0.160
3.156
39.765
B
B
3
4
11.610
B
B
-3
-4
3.112
7.846
0.671
0.378
BB_DC3DA4:DT-4DG-3_BB
12
1.997
-2.955
38.965
-0.327
-0.763
3.446
30.343
B
B
4
5
-1.693
B
B
-4
-5
3.463
-0.883
0.073
-0.912
BB_DA4DT5:DA-5DT-4_BB
13
-4.157
7.966
30.050
-1.554
-1.028
3.416
43.813
B
B
5
6
-2.270
B
B
-5
-6
3.440
-1.690
-0.062
-0.165
BB_DT5DC6:DG-6DA-5_BB
14
5.074
-6.815
43.501
-0.052
0.591
3.075
30.612
B
B
6
7
11.283
B
B
-6
-7
3.245
5.892
-0.132
-0.222
BB_DC6DT7:DA-7DG-6_BB
15
5.304
-10.157
29.591
-1.566
1.280
3.352
37.202
B
B
7
8
6.396
B
B
-7
-8
3.457
4.062
0.586
0.131
BB_DT7DC8:DG-8DA-7_BB
16
-4.785
7.533
36.687
-0.361
-1.586
2.742
34.661
B
B
8
9
0.980
B
B
-8
-9
3.147
0.573
-0.720
0.859
BB_DC8DC9:DG-9DG-8_BB
17
11.859
-20.292
32.623
1.360
2.901
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1994-06-22
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
BNL
1993-07-15
REL
AMINO ACIDS NUMBERING (RESIDUE NUMBER) CORRESPONDS TO THE
281 AMINO ACIDS OF INTACT GCN4.
T
-10
n
1
DT
-10
B
G
-9
n
2
DG
-9
B
G
-8
n
3
DG
-8
B
A
-7
n
4
DA
-7
B
G
-6
n
5
DG
-6
B
A
-5
n
6
DA
-5
B
T
-4
n
7
DT
-4
B
G
-3
n
8
DG
-3
B
A
-2
n
9
DA
-2
B
C
-1
n
10
DC
-1
B
G
1
n
11
DG
1
B
T
2
n
12
DT
2
B
C
3
n
13
DC
3
B
A
4
n
14
DA
4
B
T
5
n
15
DT
5
B
C
6
n
16
DC
6
B
T
7
n
17
DT
7
B
C
8
n
18
DC
8
B
C
9
n
19
DC
9
B
n
1
220
A
n
2
221
A
n
3
222
A
n
4
223
A
n
5
224
A
n
6
225
A
n
7
226
A
PRO
227
n
8
PRO
227
A
ALA
228
n
9
ALA
228
A
ALA
229
n
10
ALA
229
A
LEU
230
n
11
LEU
230
A
LYS
231
n
12
LYS
231
A
ARG
232
n
13
ARG
232
A
ALA
233
n
14
ALA
233
A
ARG
234
n
15
ARG
234
A
ASN
235
n
16
ASN
235
A
THR
236
n
17
THR
236
A
GLU
237
n
18
GLU
237
A
ALA
238
n
19
ALA
238
A
ALA
239
n
20
ALA
239
A
ARG
240
n
21
ARG
240
A
ARG
241
n
22
ARG
241
A
SER
242
n
23
SER
242
A
ARG
243
n
24
ARG
243
A
ALA
244
n
25
ALA
244
A
ARG
245
n
26
ARG
245
A
LYS
246
n
27
LYS
246
A
LEU
247
n
28
LEU
247
A
GLN
248
n
29
GLN
248
A
ARG
249
n
30
ARG
249
A
MET
250
n
31
MET
250
A
LYS
251
n
32
LYS
251
A
GLN
252
n
33
GLN
252
A
LEU
253
n
34
LEU
253
A
GLU
254
n
35
GLU
254
A
ASP
255
n
36
ASP
255
A
LYS
256
n
37
LYS
256
A
VAL
257
n
38
VAL
257
A
GLU
258
n
39
GLU
258
A
GLU
259
n
40
GLU
259
A
LEU
260
n
41
LEU
260
A
LEU
261
n
42
LEU
261
A
SER
262
n
43
SER
262
A
LYS
263
n
44
LYS
263
A
ASN
264
n
45
ASN
264
A
TYR
265
n
46
TYR
265
A
HIS
266
n
47
HIS
266
A
LEU
267
n
48
LEU
267
A
GLU
268
n
49
GLU
268
A
ASN
269
n
50
ASN
269
A
GLU
270
n
51
GLU
270
A
VAL
271
n
52
VAL
271
A
ALA
272
n
53
ALA
272
A
ARG
273
n
54
ARG
273
A
LEU
274
n
55
LEU
274
A
LYS
275
n
56
LYS
275
A
LYS
276
n
57
LYS
276
A
LEU
277
n
58
LEU
277
A
VAL
278
n
59
VAL
278
A
GLY
279
n
60
GLY
279
A
GLU
280
n
61
GLU
280
A
ARG
281
n
62
ARG
281
A
author_defined_assembly
4
tetrameric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_775
-y+2,-x+2,-z+1/2
crystal symmetry operation
117.3200000000
117.3200000000
43.3300000000
1
A
ILE
220
B
ILE
1
1
Y
1
A
VAL
221
B
VAL
2
1
Y
1
A
PRO
222
B
PRO
3
1
Y
1
A
GLU
223
B
GLU
4
1
Y
1
A
SER
224
B
SER
5
1
Y
1
A
SER
225
B
SER
6
1
Y
1
A
ASP
226
B
ASP
7
1
Y
1
-5.71
0.80
105.90
100.19
B
B
B
O4'
C1'
C2'
DT
DT
DT
-10
-10
-10
N
1
3.66
0.60
119.00
122.66
B
B
B
C4
C5
C7
DT
DT
DT
-10
-10
-10
N
1
-5.49
0.60
122.90
117.41
B
B
B
C6
C5
C7
DT
DT
DT
-10
-10
-10
N
1
14.53
0.30
108.30
122.83
B
B
B
O4'
C1'
N9
DG
DG
DG
-9
-9
-9
N
1
15.02
1.60
120.90
135.92
B
B
B
P
O5'
C5'
DG
DG
DG
-8
-8
-8
N
1
7.97
1.10
109.80
117.77
B
B
B
C5'
C4'
O4'
DG
DG
DG
-8
-8
-8
N
1
2.35
0.30
108.30
110.65
B
B
B
O4'
C1'
N9
DG
DG
DG
-8
-8
-8
N
1
8.68
0.30
108.30
116.98
B
B
B
O4'
C1'
N9
DA
DA
DA
-5
-5
-5
N
1
11.36
1.20
119.70
131.06
B
B
B
C3'
O3'
P
DA
DA
DT
-5
-5
-4
Y
1
-4.13
0.60
122.30
118.17
B
B
B
N3
C2
O2
DT
DT
DT
-4
-4
-4
N
1
-3.78
0.60
122.90
119.12
B
B
B
C6
C5
C7
DT
DT
DT
-4
-4
-4
N
1
-14.26
1.90
104.00
89.74
B
B
B
O3'
P
O5'
DT
DG
DG
-4
-3
-3
Y
1
-12.13
1.80
114.10
101.97
B
B
B
C5'
C4'
C3'
DG
DG
DG
-3
-3
-3
N
1
6.70
0.30
108.30
115.00
B
B
B
O4'
C1'
N9
DG
DG
DG
-3
-3
-3
N
1
3.70
0.30
108.30
112.00
B
B
B
O4'
C1'
N9
DA
DA
DA
-2
-2
-2
N
1
3.61
0.60
118.90
122.51
B
B
B
N1
C2
O2
DC
DC
DC
-1
-1
-1
N
1
14.13
1.20
119.70
133.83
B
B
B
C3'
O3'
P
DG
DG
DT
1
1
2
Y
1
-4.50
0.40
104.50
100.00
B
B
B
O4'
C4'
C3'
DT
DT
DT
2
2
2
N
1
-7.26
0.80
105.90
98.64
B
B
B
O4'
C1'
C2'
DT
DT
DT
2
2
2
N
1
-5.76
0.80
105.90
100.14
B
B
B
O4'
C1'
C2'
DC
DC
DC
3
3
3
N
1
7.66
0.30
108.30
115.96
B
B
B
O4'
C1'
N1
DC
DC
DC
3
3
3
N
1
9.00
0.30
108.30
117.30
B
B
B
O4'
C1'
N9
DA
DA
DA
4
4
4
N
1
9.92
1.10
109.80
119.72
B
B
B
C5'
C4'
O4'
DT
DT
DT
5
5
5
N
1
3.40
0.30
108.30
111.70
B
B
B
O4'
C1'
N1
DT
DT
DT
5
5
5
N
1
4.29
0.60
118.00
122.29
B
B
B
C4
C5
C6
DT
DT
DT
5
5
5
N
1
-6.04
0.60
122.30
116.26
B
B
B
N3
C2
O2
DT
DT
DT
5
5
5
N
1
-3.74
0.60
122.90
119.16
B
B
B
C6
C5
C7
DT
DT
DT
5
5
5
N
1
10.05
0.30
108.30
118.35
B
B
B
O4'
C1'
N1
DC
DC
DC
6
6
6
N
1
4.52
0.60
118.90
123.42
B
B
B
N1
C2
O2
DC
DC
DC
6
6
6
N
1
-4.29
0.70
121.90
117.61
B
B
B
N3
C2
O2
DC
DC
DC
6
6
6
N
1
12.72
2.00
112.30
125.02
B
B
B
C4'
C3'
O3'
DT
DT
DT
7
7
7
N
1
6.61
0.30
108.30
114.91
B
B
B
O4'
C1'
N1
DT
DT
DT
7
7
7
N
1
13.46
1.20
119.70
133.16
B
B
B
C3'
O3'
P
DT
DT
DC
7
7
8
Y
1
-11.60
1.90
112.60
101.00
B
B
B
N1
C1'
C2'
DC
DC
DC
8
8
8
N
1
7.83
0.30
108.30
116.13
B
B
B
O4'
C1'
N1
DC
DC
DC
8
8
8
N
1
8.57
1.40
114.30
122.87
B
B
B
N1
C1'
C2'
DC
DC
DC
9
9
9
N
1
-13.92
0.70
108.00
94.08
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
5.00
0.50
120.30
125.30
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
243
243
243
N
1
-4.07
0.50
120.30
116.23
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
243
243
243
N
1
-3.12
0.50
120.30
117.18
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
249
249
249
N
1
13.32
2.20
113.40
126.72
A
A
A
CA
CB
CG
LYS
LYS
LYS
256
256
256
N
1
B
B
C5'
C4'
DT
DT
-10
-10
0.056
0.007
1.512
1.568
N
1
B
B
P
O5'
DG
DG
-9
-9
0.079
0.010
1.593
1.672
N
1
B
B
C5'
C4'
DG
DG
-9
-9
0.073
0.007
1.512
1.585
N
1
B
B
C5'
C4'
DG
DG
-8
-8
0.068
0.007
1.512
1.580
N
1
B
B
C5
C7
DT
DT
-4
-4
0.038
0.006
1.496
1.534
N
1
B
B
C6
N1
DG
DG
-3
-3
-0.045
0.007
1.391
1.346
N
1
B
B
C5'
C4'
DT
DT
5
5
0.050
0.007
1.512
1.562
N
1
B
B
C6
N1
DT
DT
5
5
-0.052
0.007
1.378
1.326
N
1
B
B
P
O5'
DC
DC
6
6
0.110
0.010
1.593
1.703
N
1
B
B
C5'
C4'
DC
DC
6
6
0.050
0.007
1.512
1.562
N
1
B
B
C5
C7
DT
DT
7
7
0.040
0.006
1.496
1.536
N
1
A
ALA
229
-27.35
-48.66
1
A
LEU
277
178.94
-39.80
1
A
GLU
280
161.99
-13.76
0.2160000
0.2160000
3.000
10.000
3296
98.200
1
3.000
3.000
10.000
0
842
0
386
456
0.020
3.86
3.000
20.000
1DGC
1
refinement
X-PLOR
THE X-RAY STRUCTURE OF THE GCN4-BZIP BOUND TO ATF/CREB SITE DNA SHOWS THE COMPLEX DEPENDS ON DNA FLEXIBILITY
1
N
N
2
N
N
THE ASYMMETRIC UNIT CONTAINS ONE HALF OF PROTEIN/DNA
COMPLEX PER ASYMMETRIC UNIT.
MOLECULAR DYAD AXIS OF PROTEIN DIMER AND PALINDROMIC HALF
SITES OF THE DNA COINCIDES WITH CRYSTALLOGRAPHIC TWO-FOLD
AXIS. THE FULL PROTEIN/DNA COMPLEX CAN BE OBTAINED BY
APPLYING THE FOLLOWING TRANSFORMATION MATRIX AND
TRANSLATION VECTOR TO THE COORDINATES X Y Z:
0 -1 0 X 117.32 X SYMM
-1 0 0 Y + 117.32 = Y SYMM
0 0 -1 Z 43.33 Z SYMM
A
ALA
228
B
ALA
9
HELX_P
A
LYS
276
B
LYS
57
1
A
49
hydrog
WATSON-CRICK
B
DG
-9
A
N1
DG
2
1_555
B
DC
9
A
N3
DC
19
8_775
hydrog
WATSON-CRICK
B
DG
-9
A
N2
DG
2
1_555
B
DC
9
A
O2
DC
19
8_775
hydrog
WATSON-CRICK
B
DG
-9
A
O6
DG
2
1_555
B
DC
9
A
N4
DC
19
8_775
hydrog
WATSON-CRICK
B
DG
-8
A
N1
DG
3
1_555
B
DC
8
A
N3
DC
18
8_775
hydrog
WATSON-CRICK
B
DG
-8
A
N2
DG
3
1_555
B
DC
8
A
O2
DC
18
8_775
hydrog
WATSON-CRICK
B
DG
-8
A
O6
DG
3
1_555
B
DC
8
A
N4
DC
18
8_775
hydrog
WATSON-CRICK
B
DA
-7
A
N1
DA
4
1_555
B
DT
7
A
N3
DT
17
8_775
hydrog
WATSON-CRICK
B
DA
-7
A
N6
DA
4
1_555
B
DT
7
A
O4
DT
17
8_775
hydrog
WATSON-CRICK
B
DG
-6
A
N1
DG
5
1_555
B
DC
6
A
N3
DC
16
8_775
hydrog
WATSON-CRICK
B
DG
-6
A
N2
DG
5
1_555
B
DC
6
A
O2
DC
16
8_775
hydrog
WATSON-CRICK
B
DG
-6
A
O6
DG
5
1_555
B
DC
6
A
N4
DC
16
8_775
hydrog
WATSON-CRICK
B
DA
-5
A
N1
DA
6
1_555
B
DT
5
A
N3
DT
15
8_775
hydrog
WATSON-CRICK
B
DA
-5
A
N6
DA
6
1_555
B
DT
5
A
O4
DT
15
8_775
hydrog
WATSON-CRICK
B
DT
-4
A
N3
DT
7
1_555
B
DA
4
A
N1
DA
14
8_775
hydrog
WATSON-CRICK
B
DT
-4
A
O4
DT
7
1_555
B
DA
4
A
N6
DA
14
8_775
hydrog
WATSON-CRICK
B
DG
-3
A
N1
DG
8
1_555
B
DC
3
A
N3
DC
13
8_775
hydrog
WATSON-CRICK
B
DG
-3
A
N2
DG
8
1_555
B
DC
3
A
O2
DC
13
8_775
hydrog
WATSON-CRICK
B
DG
-3
A
O6
DG
8
1_555
B
DC
3
A
N4
DC
13
8_775
hydrog
WATSON-CRICK
B
DA
-2
A
N1
DA
9
1_555
B
DT
2
A
N3
DT
12
8_775
hydrog
WATSON-CRICK
B
DA
-2
A
N6
DA
9
1_555
B
DT
2
A
O4
DT
12
8_775
hydrog
WATSON-CRICK
B
DC
-1
A
N3
DC
10
1_555
B
DG
1
A
N1
DG
11
8_775
hydrog
WATSON-CRICK
B
DC
-1
A
N4
DC
10
1_555
B
DG
1
A
O6
DG
11
8_775
hydrog
WATSON-CRICK
B
DC
-1
A
O2
DC
10
1_555
B
DG
1
A
N2
DG
11
8_775
hydrog
WATSON-CRICK
B
DG
1
A
N1
DG
11
1_555
B
DC
-1
A
N3
DC
10
8_775
hydrog
WATSON-CRICK
B
DG
1
A
N2
DG
11
1_555
B
DC
-1
A
O2
DC
10
8_775
hydrog
WATSON-CRICK
B
DG
1
A
O6
DG
11
1_555
B
DC
-1
A
N4
DC
10
8_775
hydrog
WATSON-CRICK
B
DT
2
A
N3
DT
12
1_555
B
DA
-2
A
N1
DA
9
8_775
hydrog
WATSON-CRICK
B
DT
2
A
O4
DT
12
1_555
B
DA
-2
A
N6
DA
9
8_775
hydrog
WATSON-CRICK
B
DC
3
A
N3
DC
13
1_555
B
DG
-3
A
N1
DG
8
8_775
hydrog
WATSON-CRICK
B
DC
3
A
N4
DC
13
1_555
B
DG
-3
A
O6
DG
8
8_775
hydrog
WATSON-CRICK
B
DC
3
A
O2
DC
13
1_555
B
DG
-3
A
N2
DG
8
8_775
hydrog
WATSON-CRICK
B
DA
4
A
N1
DA
14
1_555
B
DT
-4
A
N3
DT
7
8_775
hydrog
WATSON-CRICK
B
DA
4
A
N6
DA
14
1_555
B
DT
-4
A
O4
DT
7
8_775
hydrog
WATSON-CRICK
B
DT
5
A
N3
DT
15
1_555
B
DA
-5
A
N1
DA
6
8_775
hydrog
WATSON-CRICK
B
DT
5
A
O4
DT
15
1_555
B
DA
-5
A
N6
DA
6
8_775
hydrog
WATSON-CRICK
B
DC
6
A
N3
DC
16
1_555
B
DG
-6
A
N1
DG
5
8_775
hydrog
WATSON-CRICK
B
DC
6
A
N4
DC
16
1_555
B
DG
-6
A
O6
DG
5
8_775
hydrog
WATSON-CRICK
B
DC
6
A
O2
DC
16
1_555
B
DG
-6
A
N2
DG
5
8_775
hydrog
WATSON-CRICK
B
DT
7
A
N3
DT
17
1_555
B
DA
-7
A
N1
DA
4
8_775
hydrog
WATSON-CRICK
B
DT
7
A
O4
DT
17
1_555
B
DA
-7
A
N6
DA
4
8_775
hydrog
WATSON-CRICK
B
DC
8
A
N3
DC
18
1_555
B
DG
-8
A
N1
DG
3
8_775
hydrog
WATSON-CRICK
B
DC
8
A
N4
DC
18
1_555
B
DG
-8
A
O6
DG
3
8_775
hydrog
WATSON-CRICK
B
DC
8
A
O2
DC
18
1_555
B
DG
-8
A
N2
DG
3
8_775
hydrog
WATSON-CRICK
B
DC
9
A
N3
DC
19
1_555
B
DG
-9
A
N1
DG
2
8_775
hydrog
WATSON-CRICK
B
DC
9
A
N4
DC
19
1_555
B
DG
-9
A
O6
DG
2
8_775
hydrog
WATSON-CRICK
B
DC
9
A
O2
DC
19
1_555
B
DG
-9
A
N2
DG
2
8_775
TRANSCRIPTION/DNA
PROTEIN-DNA COMPLEX, DOUBLE HELIX, TRANSCRIPTION-DNA COMPLEX
GCN4_YEAST
UNP
2
P03069
1DGC
PDB
1
1DGC
220
281
1DGC
220
281
P03069
A
1
1
62
-10
9
1DGC
-10
9
1DGC
B
2
1
19
92
P 41 21 2