0.006549
0.003781
0.000000
0.000000
0.007562
0.000000
0.000000
0.000000
0.011547
0.00000
0.00000
0.00000
ATOMS WITH WEAK DENSITY HAVE BEEN REFINED WITH ZERO WEIGHT.
LYS 272 IS COVALENTLY BOUND TO THE COFACTOR PLP.
Hohenester, E.
Jansonius, J.N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
152.700
152.700
86.600
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
Li 1
6.941
LITHIUM ION
non-polymer
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H13 N O4 S
195.237
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
non-polymer
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H10 N O6 P
247.142
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
33
13561
13570
10.1021/bi00250a008
7947767
An alkali metal ion size-dependent switch in the active site structure of dialkylglycine decarboxylase.
1994
US
Science
SCIEAS
0038
0036-8075
261
756
Dialkylglycine Decarboxylase Structure: Bifunctional Active Site and Alkali Metal Sites
1993
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
265
5531
Pseudomonas Cepacia 2,2-Dialkylglycine Decarboxylase. Sequence and Expression in Escherichia Coli of Structural and Repressor Genes
1990
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
x-ray
1
1.0
46374.145
DIALKYLGLYCINE DECARBOXYLASE
4.1.1.64
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
6.941
LITHIUM ION
1
syn
non-polymer
247.142
PYRIDOXAL-5'-PHOSPHATE
1
syn
non-polymer
195.237
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
1
syn
non-polymer
18.015
water
99
nat
water
no
no
SLNDDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSG
MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA
VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI
LDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV
QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM
GGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
SLNDDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSG
MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA
VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI
LDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV
QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM
GGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Burkholderia
sample
292
Burkholderia cepacia
3.14
60.84
pdbx_database_status
pdbx_unobs_or_zero_occ_atoms
pdbx_unobs_or_zero_occ_residues
struct_conf
struct_conf_type
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Advisory
Derived calculations
Other
1
0
1994-09-30
1
1
2008-03-03
1
2
2011-07-13
1
3
2017-11-29
_pdbx_database_status.process_site
Y
BNL
1994-06-29
REL
NA
SODIUM ION
LI
LITHIUM ION
PLP
PYRIDOXAL-5'-PHOSPHATE
MES
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
HOH
water
SEQUENCE ADVISORY NOTICE
DIFFERENCE BETWEEN SWISS-PROT AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: DGDA_BURCE
SWISS-PROT RESIDUE PDB SEQRES
NAME NUMBER NAME CHAIN SEQ/INSERT CODE
GLN 14 HIS 15
GLU 51 GLN 52
ILE 81 MET 82
VAL 82 LEU 83
ARG 307 PRO 308
PRO 309 LEU 309
GLY 312 ALA 312
THE PUBLISHED AMINO ACID SEQUENCE (REFERENCE 1) WAS
CORRECTED AT THREE POSITIONS. RESEQUENCING OF SEVERAL
GC-RICH REGIONS OF THE DGDA GENE VERIFIED THESE CHANGES
(J.W. KELLER, PERSONAL COMMUNICATION):
GLU 52 --> GLN 52
ILE 82, VAL 83 --> MET 82, LEU 83
ARG 308, CYS 309, PRO 310, PRO 311, ALA 312, GLY 313 -->
PRO 308, LEU 309, PRO 310, ALA 311, ALA 312 (INCLUDES
A DELETION).
GLN 15 -->HIS 15 (M.D. TONEY ET AL., J. MOL. BIOL. 222:
873-875 (1991)).
NA
435
2
NA
NA
435
A
LI
436
3
LI
LI
436
A
PLP
272
4
PLP
PLP
437
A
MES
434
5
MES
MES
434
A
HOH
501
6
HOH
HOH
501
A
HOH
502
6
HOH
HOH
502
A
HOH
503
6
HOH
HOH
503
A
HOH
504
6
HOH
HOH
504
A
HOH
505
6
HOH
HOH
505
A
HOH
506
6
HOH
HOH
506
A
HOH
507
6
HOH
HOH
507
A
HOH
508
6
HOH
HOH
508
A
HOH
509
6
HOH
HOH
509
A
HOH
510
6
HOH
HOH
510
A
HOH
511
6
HOH
HOH
511
A
HOH
512
6
HOH
HOH
512
A
HOH
513
6
HOH
HOH
513
A
HOH
514
6
HOH
HOH
514
A
HOH
515
6
HOH
HOH
515
A
HOH
516
6
HOH
HOH
516
A
HOH
517
6
HOH
HOH
517
A
HOH
518
6
HOH
HOH
518
A
HOH
519
6
HOH
HOH
519
A
HOH
520
6
HOH
HOH
520
A
HOH
521
6
HOH
HOH
521
A
HOH
522
6
HOH
HOH
522
A
HOH
523
6
HOH
HOH
523
A
HOH
524
6
HOH
HOH
524
A
HOH
525
6
HOH
HOH
525
A
HOH
526
6
HOH
HOH
526
A
HOH
527
6
HOH
HOH
527
A
HOH
528
6
HOH
HOH
528
A
HOH
529
6
HOH
HOH
529
A
HOH
530
6
HOH
HOH
530
A
HOH
531
6
HOH
HOH
531
A
HOH
532
6
HOH
HOH
532
A
HOH
533
6
HOH
HOH
533
A
HOH
534
6
HOH
HOH
534
A
HOH
535
6
HOH
HOH
535
A
HOH
536
6
HOH
HOH
536
A
HOH
537
6
HOH
HOH
537
A
HOH
538
6
HOH
HOH
538
A
HOH
539
6
HOH
HOH
539
A
HOH
540
6
HOH
HOH
540
A
HOH
541
6
HOH
HOH
541
A
HOH
542
6
HOH
HOH
542
A
HOH
543
6
HOH
HOH
543
A
HOH
544
6
HOH
HOH
544
A
HOH
545
6
HOH
HOH
545
A
HOH
546
6
HOH
HOH
546
A
HOH
547
6
HOH
HOH
547
A
HOH
548
6
HOH
HOH
548
A
HOH
549
6
HOH
HOH
549
A
HOH
550
6
HOH
HOH
550
A
HOH
551
6
HOH
HOH
551
A
HOH
552
6
HOH
HOH
552
A
HOH
553
6
HOH
HOH
553
A
HOH
554
6
HOH
HOH
554
A
HOH
555
6
HOH
HOH
555
A
HOH
556
6
HOH
HOH
556
A
HOH
557
6
HOH
HOH
557
A
HOH
558
6
HOH
HOH
558
A
HOH
559
6
HOH
HOH
559
A
HOH
560
6
HOH
HOH
560
A
HOH
561
6
HOH
HOH
561
A
HOH
562
6
HOH
HOH
562
A
HOH
563
6
HOH
HOH
563
A
HOH
564
6
HOH
HOH
564
A
HOH
565
6
HOH
HOH
565
A
HOH
566
6
HOH
HOH
566
A
HOH
567
6
HOH
HOH
567
A
HOH
568
6
HOH
HOH
568
A
HOH
569
6
HOH
HOH
569
A
HOH
570
6
HOH
HOH
570
A
HOH
571
6
HOH
HOH
571
A
HOH
572
6
HOH
HOH
572
A
HOH
573
6
HOH
HOH
573
A
HOH
574
6
HOH
HOH
574
A
HOH
575
6
HOH
HOH
575
A
HOH
576
6
HOH
HOH
576
A
HOH
577
6
HOH
HOH
577
A
HOH
578
6
HOH
HOH
578
A
HOH
579
6
HOH
HOH
579
A
HOH
580
6
HOH
HOH
580
A
HOH
581
6
HOH
HOH
581
A
HOH
582
6
HOH
HOH
582
A
HOH
583
6
HOH
HOH
583
A
HOH
584
6
HOH
HOH
584
A
HOH
585
6
HOH
HOH
585
A
HOH
586
6
HOH
HOH
586
A
HOH
587
6
HOH
HOH
587
A
HOH
588
6
HOH
HOH
588
A
HOH
589
6
HOH
HOH
589
A
HOH
590
6
HOH
HOH
590
A
HOH
591
6
HOH
HOH
591
A
HOH
592
6
HOH
HOH
592
A
HOH
593
6
HOH
HOH
593
A
HOH
594
6
HOH
HOH
594
A
HOH
595
6
HOH
HOH
595
A
HOH
596
6
HOH
HOH
596
A
HOH
597
6
HOH
HOH
597
A
HOH
598
6
HOH
HOH
598
A
HOH
599
6
HOH
HOH
599
A
n
1
2
A
LEU
3
n
2
LEU
3
A
ASN
4
n
3
ASN
4
A
ASP
5
n
4
ASP
5
A
ASP
6
n
5
ASP
6
A
ALA
7
n
6
ALA
7
A
THR
8
n
7
THR
8
A
PHE
9
n
8
PHE
9
A
TRP
10
n
9
TRP
10
A
ARG
11
n
10
ARG
11
A
ASN
12
n
11
ASN
12
A
ALA
13
n
12
ALA
13
A
ARG
14
n
13
ARG
14
A
HIS
15
n
14
HIS
15
A
HIS
16
n
15
HIS
16
A
LEU
17
n
16
LEU
17
A
VAL
18
n
17
VAL
18
A
ARG
19
n
18
ARG
19
A
TYR
20
n
19
TYR
20
A
GLY
21
n
20
GLY
21
A
GLY
22
n
21
GLY
22
A
THR
23
n
22
THR
23
A
PHE
24
n
23
PHE
24
A
GLU
25
n
24
GLU
25
A
PRO
26
n
25
PRO
26
A
MET
27
n
26
MET
27
A
ILE
28
n
27
ILE
28
A
ILE
29
n
28
ILE
29
A
GLU
30
n
29
GLU
30
A
ARG
31
n
30
ARG
31
A
ALA
32
n
31
ALA
32
A
LYS
33
n
32
LYS
33
A
GLY
34
n
33
GLY
34
A
SER
35
n
34
SER
35
A
PHE
36
n
35
PHE
36
A
VAL
37
n
36
VAL
37
A
TYR
38
n
37
TYR
38
A
ASP
39
n
38
ASP
39
A
ALA
40
n
39
ALA
40
A
ASP
41
n
40
ASP
41
A
GLY
42
n
41
GLY
42
A
ARG
43
n
42
ARG
43
A
ALA
44
n
43
ALA
44
A
ILE
45
n
44
ILE
45
A
LEU
46
n
45
LEU
46
A
ASP
47
n
46
ASP
47
A
PHE
48
n
47
PHE
48
A
THR
49
n
48
THR
49
A
SER
50
n
49
SER
50
A
GLY
51
n
50
GLY
51
A
GLN
52
n
51
GLN
52
A
MET
53
n
52
MET
53
A
SER
54
n
53
SER
54
A
ALA
55
n
54
ALA
55
A
VAL
56
n
55
VAL
56
A
LEU
57
n
56
LEU
57
A
GLY
58
n
57
GLY
58
A
HIS
59
n
58
HIS
59
A
CYS
60
n
59
CYS
60
A
HIS
61
n
60
HIS
61
A
PRO
62
n
61
PRO
62
A
GLU
63
n
62
GLU
63
A
ILE
64
n
63
ILE
64
A
VAL
65
n
64
VAL
65
A
SER
66
n
65
SER
66
A
VAL
67
n
66
VAL
67
A
ILE
68
n
67
ILE
68
A
GLY
69
n
68
GLY
69
A
GLU
70
n
69
GLU
70
A
TYR
71
n
70
TYR
71
A
ALA
72
n
71
ALA
72
A
GLY
73
n
72
GLY
73
A
LYS
74
n
73
LYS
74
A
LEU
75
n
74
LEU
75
A
ASP
76
n
75
ASP
76
A
HIS
77
n
76
HIS
77
A
LEU
78
n
77
LEU
78
A
PHE
79
n
78
PHE
79
A
SER
80
n
79
SER
80
A
GLY
81
n
80
GLY
81
A
MET
82
n
81
MET
82
A
LEU
83
n
82
LEU
83
A
SER
84
n
83
SER
84
A
ARG
85
n
84
ARG
85
A
PRO
86
n
85
PRO
86
A
VAL
87
n
86
VAL
87
A
VAL
88
n
87
VAL
88
A
ASP
89
n
88
ASP
89
A
LEU
90
n
89
LEU
90
A
ALA
91
n
90
ALA
91
A
THR
92
n
91
THR
92
A
ARG
93
n
92
ARG
93
A
LEU
94
n
93
LEU
94
A
ALA
95
n
94
ALA
95
A
ASN
96
n
95
ASN
96
A
ILE
97
n
96
ILE
97
A
THR
98
n
97
THR
98
A
PRO
99
n
98
PRO
99
A
PRO
100
n
99
PRO
100
A
GLY
101
n
100
GLY
101
A
LEU
102
n
101
LEU
102
A
ASP
103
n
102
ASP
103
A
ARG
104
n
103
ARG
104
A
ALA
105
n
104
ALA
105
A
LEU
106
n
105
LEU
106
A
LEU
107
n
106
LEU
107
A
LEU
108
n
107
LEU
108
A
SER
109
n
108
SER
109
A
THR
110
n
109
THR
110
A
GLY
111
n
110
GLY
111
A
ALA
112
n
111
ALA
112
A
GLU
113
n
112
GLU
113
A
SER
114
n
113
SER
114
A
ASN
115
n
114
ASN
115
A
GLU
116
n
115
GLU
116
A
ALA
117
n
116
ALA
117
A
ALA
118
n
117
ALA
118
A
ILE
119
n
118
ILE
119
A
ARG
120
n
119
ARG
120
A
MET
121
n
120
MET
121
A
ALA
122
n
121
ALA
122
A
LYS
123
n
122
LYS
123
A
LEU
124
n
123
LEU
124
A
VAL
125
n
124
VAL
125
A
THR
126
n
125
THR
126
A
GLY
127
n
126
GLY
127
A
LYS
128
n
127
LYS
128
A
TYR
129
n
128
TYR
129
A
GLU
130
n
129
GLU
130
A
ILE
131
n
130
ILE
131
A
VAL
132
n
131
VAL
132
A
GLY
133
n
132
GLY
133
A
PHE
134
n
133
PHE
134
A
ALA
135
n
134
ALA
135
A
GLN
136
n
135
GLN
136
A
SER
137
n
136
SER
137
A
TRP
138
n
137
TRP
138
A
HIS
139
n
138
HIS
139
A
GLY
140
n
139
GLY
140
A
MET
141
n
140
MET
141
A
THR
142
n
141
THR
142
A
GLY
143
n
142
GLY
143
A
ALA
144
n
143
ALA
144
A
ALA
145
n
144
ALA
145
A
ALA
146
n
145
ALA
146
A
SER
147
n
146
SER
147
A
ALA
148
n
147
ALA
148
A
THR
149
n
148
THR
149
A
TYR
150
n
149
TYR
150
A
SER
151
n
150
SER
151
A
ALA
152
n
151
ALA
152
A
GLY
153
n
152
GLY
153
A
ARG
154
n
153
ARG
154
A
LYS
155
n
154
LYS
155
A
GLY
156
n
155
GLY
156
A
VAL
157
n
156
VAL
157
A
GLY
158
n
157
GLY
158
A
PRO
159
n
158
PRO
159
A
ALA
160
n
159
ALA
160
A
ALA
161
n
160
ALA
161
A
VAL
162
n
161
VAL
162
A
GLY
163
n
162
GLY
163
A
SER
164
n
163
SER
164
A
PHE
165
n
164
PHE
165
A
ALA
166
n
165
ALA
166
A
ILE
167
n
166
ILE
167
A
PRO
168
n
167
PRO
168
A
ALA
169
n
168
ALA
169
A
PRO
170
n
169
PRO
170
A
PHE
171
n
170
PHE
171
A
THR
172
n
171
THR
172
A
TYR
173
n
172
TYR
173
A
ARG
174
n
173
ARG
174
A
PRO
175
n
174
PRO
175
A
ARG
176
n
175
ARG
176
A
PHE
177
n
176
PHE
177
A
GLU
178
n
177
GLU
178
A
ARG
179
n
178
ARG
179
A
ASN
180
n
179
ASN
180
A
GLY
181
n
180
GLY
181
A
ALA
182
n
181
ALA
182
A
TYR
183
n
182
TYR
183
A
ASP
184
n
183
ASP
184
A
TYR
185
n
184
TYR
185
A
LEU
186
n
185
LEU
186
A
ALA
187
n
186
ALA
187
A
GLU
188
n
187
GLU
188
A
LEU
189
n
188
LEU
189
A
ASP
190
n
189
ASP
190
A
TYR
191
n
190
TYR
191
A
ALA
192
n
191
ALA
192
A
PHE
193
n
192
PHE
193
A
ASP
194
n
193
ASP
194
A
LEU
195
n
194
LEU
195
A
ILE
196
n
195
ILE
196
A
ASP
197
n
196
ASP
197
A
ARG
198
n
197
ARG
198
A
GLN
199
n
198
GLN
199
A
SER
200
n
199
SER
200
A
SER
201
n
200
SER
201
A
GLY
202
n
201
GLY
202
A
ASN
203
n
202
ASN
203
A
LEU
204
n
203
LEU
204
A
ALA
205
n
204
ALA
205
A
ALA
206
n
205
ALA
206
A
PHE
207
n
206
PHE
207
A
ILE
208
n
207
ILE
208
A
ALA
209
n
208
ALA
209
A
GLU
210
n
209
GLU
210
A
PRO
211
n
210
PRO
211
A
ILE
212
n
211
ILE
212
A
LEU
213
n
212
LEU
213
A
SER
214
n
213
SER
214
A
SER
215
n
214
SER
215
A
GLY
216
n
215
GLY
216
A
GLY
217
n
216
GLY
217
A
ILE
218
n
217
ILE
218
A
ILE
219
n
218
ILE
219
A
GLU
220
n
219
GLU
220
A
LEU
221
n
220
LEU
221
A
PRO
222
n
221
PRO
222
A
ASP
223
n
222
ASP
223
A
GLY
224
n
223
GLY
224
A
TYR
225
n
224
TYR
225
A
MET
226
n
225
MET
226
A
ALA
227
n
226
ALA
227
A
ALA
228
n
227
ALA
228
A
LEU
229
n
228
LEU
229
A
LYS
230
n
229
LYS
230
A
ARG
231
n
230
ARG
231
A
LYS
232
n
231
LYS
232
A
CYS
233
n
232
CYS
233
A
GLU
234
n
233
GLU
234
A
ALA
235
n
234
ALA
235
A
ARG
236
n
235
ARG
236
A
GLY
237
n
236
GLY
237
A
MET
238
n
237
MET
238
A
LEU
239
n
238
LEU
239
A
LEU
240
n
239
LEU
240
A
ILE
241
n
240
ILE
241
A
LEU
242
n
241
LEU
242
A
ASP
243
n
242
ASP
243
A
GLU
244
n
243
GLU
244
A
ALA
245
n
244
ALA
245
A
GLN
246
n
245
GLN
246
A
THR
247
n
246
THR
247
A
GLY
248
n
247
GLY
248
A
VAL
249
n
248
VAL
249
A
GLY
250
n
249
GLY
250
A
ARG
251
n
250
ARG
251
A
THR
252
n
251
THR
252
A
GLY
253
n
252
GLY
253
A
THR
254
n
253
THR
254
A
MET
255
n
254
MET
255
A
PHE
256
n
255
PHE
256
A
ALA
257
n
256
ALA
257
A
CYS
258
n
257
CYS
258
A
GLN
259
n
258
GLN
259
A
ARG
260
n
259
ARG
260
A
ASP
261
n
260
ASP
261
A
GLY
262
n
261
GLY
262
A
VAL
263
n
262
VAL
263
A
THR
264
n
263
THR
264
A
PRO
265
n
264
PRO
265
A
ASP
266
n
265
ASP
266
A
ILE
267
n
266
ILE
267
A
LEU
268
n
267
LEU
268
A
THR
269
n
268
THR
269
A
LEU
270
n
269
LEU
270
A
SER
271
n
270
SER
271
A
LYS
272
n
271
LYS
272
A
THR
273
n
272
THR
273
A
LEU
274
n
273
LEU
274
A
GLY
275
n
274
GLY
275
A
ALA
276
n
275
ALA
276
A
GLY
277
n
276
GLY
277
A
LEU
278
n
277
LEU
278
A
PRO
279
n
278
PRO
279
A
LEU
280
n
279
LEU
280
A
ALA
281
n
280
ALA
281
A
ALA
282
n
281
ALA
282
A
ILE
283
n
282
ILE
283
A
VAL
284
n
283
VAL
284
A
THR
285
n
284
THR
285
A
SER
286
n
285
SER
286
A
ALA
287
n
286
ALA
287
A
ALA
288
n
287
ALA
288
A
ILE
289
n
288
ILE
289
A
GLU
290
n
289
GLU
290
A
GLU
291
n
290
GLU
291
A
ARG
292
n
291
ARG
292
A
ALA
293
n
292
ALA
293
A
HIS
294
n
293
HIS
294
A
GLU
295
n
294
GLU
295
A
LEU
296
n
295
LEU
296
A
GLY
297
n
296
GLY
297
A
TYR
298
n
297
TYR
298
A
LEU
299
n
298
LEU
299
A
PHE
300
n
299
PHE
300
A
TYR
301
n
300
TYR
301
A
THR
302
n
301
THR
302
A
THR
303
n
302
THR
303
A
HIS
304
n
303
HIS
304
A
VAL
305
n
304
VAL
305
A
SER
306
n
305
SER
306
A
ASP
307
n
306
ASP
307
A
PRO
308
n
307
PRO
308
A
LEU
309
n
308
LEU
309
A
PRO
310
n
309
PRO
310
A
ALA
311
n
310
ALA
311
A
ALA
312
n
311
ALA
312
A
VAL
313
n
312
VAL
313
A
GLY
314
n
313
GLY
314
A
LEU
315
n
314
LEU
315
A
ARG
316
n
315
ARG
316
A
VAL
317
n
316
VAL
317
A
LEU
318
n
317
LEU
318
A
ASP
319
n
318
ASP
319
A
VAL
320
n
319
VAL
320
A
VAL
321
n
320
VAL
321
A
GLN
322
n
321
GLN
322
A
ARG
323
n
322
ARG
323
A
ASP
324
n
323
ASP
324
A
GLY
325
n
324
GLY
325
A
LEU
326
n
325
LEU
326
A
VAL
327
n
326
VAL
327
A
ALA
328
n
327
ALA
328
A
ARG
329
n
328
ARG
329
A
ALA
330
n
329
ALA
330
A
ASN
331
n
330
ASN
331
A
VAL
332
n
331
VAL
332
A
MET
333
n
332
MET
333
A
GLY
334
n
333
GLY
334
A
ASP
335
n
334
ASP
335
A
ARG
336
n
335
ARG
336
A
LEU
337
n
336
LEU
337
A
ARG
338
n
337
ARG
338
A
ARG
339
n
338
ARG
339
A
GLY
340
n
339
GLY
340
A
LEU
341
n
340
LEU
341
A
LEU
342
n
341
LEU
342
A
ASP
343
n
342
ASP
343
A
LEU
344
n
343
LEU
344
A
MET
345
n
344
MET
345
A
GLU
346
n
345
GLU
346
A
ARG
347
n
346
ARG
347
A
PHE
348
n
347
PHE
348
A
ASP
349
n
348
ASP
349
A
CYS
350
n
349
CYS
350
A
ILE
351
n
350
ILE
351
A
GLY
352
n
351
GLY
352
A
ASP
353
n
352
ASP
353
A
VAL
354
n
353
VAL
354
A
ARG
355
n
354
ARG
355
A
GLY
356
n
355
GLY
356
A
ARG
357
n
356
ARG
357
A
GLY
358
n
357
GLY
358
A
LEU
359
n
358
LEU
359
A
LEU
360
n
359
LEU
360
A
LEU
361
n
360
LEU
361
A
GLY
362
n
361
GLY
362
A
VAL
363
n
362
VAL
363
A
GLU
364
n
363
GLU
364
A
ILE
365
n
364
ILE
365
A
VAL
366
n
365
VAL
366
A
LYS
367
n
366
LYS
367
A
ASP
368
n
367
ASP
368
A
ARG
369
n
368
ARG
369
A
ARG
370
n
369
ARG
370
A
THR
371
n
370
THR
371
A
LYS
372
n
371
LYS
372
A
GLU
373
n
372
GLU
373
A
PRO
374
n
373
PRO
374
A
ALA
375
n
374
ALA
375
A
ASP
376
n
375
ASP
376
A
GLY
377
n
376
GLY
377
A
LEU
378
n
377
LEU
378
A
GLY
379
n
378
GLY
379
A
ALA
380
n
379
ALA
380
A
LYS
381
n
380
LYS
381
A
ILE
382
n
381
ILE
382
A
THR
383
n
382
THR
383
A
ARG
384
n
383
ARG
384
A
GLU
385
n
384
GLU
385
A
CYS
386
n
385
CYS
386
A
MET
387
n
386
MET
387
A
ASN
388
n
387
ASN
388
A
LEU
389
n
388
LEU
389
A
GLY
390
n
389
GLY
390
A
LEU
391
n
390
LEU
391
A
SER
392
n
391
SER
392
A
MET
393
n
392
MET
393
A
ASN
394
n
393
ASN
394
A
ILE
395
n
394
ILE
395
A
VAL
396
n
395
VAL
396
A
GLN
397
n
396
GLN
397
A
LEU
398
n
397
LEU
398
A
PRO
399
n
398
PRO
399
A
GLY
400
n
399
GLY
400
A
MET
401
n
400
MET
401
A
GLY
402
n
401
GLY
402
A
GLY
403
n
402
GLY
403
A
VAL
404
n
403
VAL
404
A
PHE
405
n
404
PHE
405
A
ARG
406
n
405
ARG
406
A
ILE
407
n
406
ILE
407
A
ALA
408
n
407
ALA
408
A
PRO
409
n
408
PRO
409
A
PRO
410
n
409
PRO
410
A
LEU
411
n
410
LEU
411
A
THR
412
n
411
THR
412
A
VAL
413
n
412
VAL
413
A
SER
414
n
413
SER
414
A
GLU
415
n
414
GLU
415
A
ASP
416
n
415
ASP
416
A
GLU
417
n
416
GLU
417
A
ILE
418
n
417
ILE
418
A
ASP
419
n
418
ASP
419
A
LEU
420
n
419
LEU
420
A
GLY
421
n
420
GLY
421
A
LEU
422
n
421
LEU
422
A
SER
423
n
422
SER
423
A
LEU
424
n
423
LEU
424
A
LEU
425
n
424
LEU
425
A
GLY
426
n
425
GLY
426
A
GLN
427
n
426
GLN
427
A
ALA
428
n
427
ALA
428
A
ILE
429
n
428
ILE
429
A
GLU
430
n
429
GLU
430
A
ARG
431
n
430
ARG
431
A
ALA
432
n
431
ALA
432
A
LEU
433
n
432
LEU
433
A
author_defined_assembly
4
tetrameric
A
ALA
95
A
O
ALA
94
1_555
A
NA
435
B
NA
NA
1_555
A
LEU
102
A
O
LEU
101
1_555
91.8
A
ALA
95
A
O
ALA
94
1_555
A
NA
435
B
NA
NA
1_555
A
HOH
540
F
O
HOH
1_555
90.8
A
LEU
102
A
O
LEU
101
1_555
A
NA
435
B
NA
NA
1_555
A
HOH
540
F
O
HOH
1_555
85.3
A
ALA
95
A
O
ALA
94
1_555
A
NA
435
B
NA
NA
1_555
A
PRO
99
A
O
PRO
98
1_555
165.7
A
LEU
102
A
O
LEU
101
1_555
A
NA
435
B
NA
NA
1_555
A
PRO
99
A
O
PRO
98
1_555
101.3
A
HOH
540
F
O
HOH
1_555
A
NA
435
B
NA
NA
1_555
A
PRO
99
A
O
PRO
98
1_555
95.9
A
ALA
95
A
O
ALA
94
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
O
THR
97
1_555
90.1
A
LEU
102
A
O
LEU
101
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
O
THR
97
1_555
156.5
A
HOH
540
F
O
HOH
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
O
THR
97
1_555
118.0
A
PRO
99
A
O
PRO
98
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
O
THR
97
1_555
75.7
A
ALA
95
A
O
ALA
94
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
OG1
THR
97
1_555
71.6
A
LEU
102
A
O
LEU
101
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
OG1
THR
97
1_555
84.6
A
HOH
540
F
O
HOH
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
OG1
THR
97
1_555
159.4
A
PRO
99
A
O
PRO
98
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
OG1
THR
97
1_555
103.7
A
THR
98
A
O
THR
97
1_555
A
NA
435
B
NA
NA
1_555
A
THR
98
A
OG1
THR
97
1_555
73.8
A
HOH
552
F
O
HOH
1_555
A
LI
436
C
LI
LI
1_555
A
LEU
78
A
O
LEU
77
1_555
96.5
A
HOH
552
F
O
HOH
1_555
A
LI
436
C
LI
LI
1_555
A
HOH
539
F
O
HOH
1_555
112.9
A
LEU
78
A
O
LEU
77
1_555
A
LI
436
C
LI
LI
1_555
A
HOH
539
F
O
HOH
1_555
96.5
A
HOH
552
F
O
HOH
1_555
A
LI
436
C
LI
LI
1_555
A
ASP
307
A
OD1
ASP
306
1_555
128.2
A
LEU
78
A
O
LEU
77
1_555
A
LI
436
C
LI
LI
1_555
A
ASP
307
A
OD1
ASP
306
1_555
118.9
A
HOH
539
F
O
HOH
1_555
A
LI
436
C
LI
LI
1_555
A
ASP
307
A
OD1
ASP
306
1_555
100.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
7_555
y,x,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
28.8666666667
0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
10_665
-y+1,-x+1,-z+1/3
crystal symmetry operation
76.3500000000
132.2420791579
28.8666666667
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_665
-x+1,-y+1,z
crystal symmetry operation
76.3500000000
132.2420791579
0.0000000000
A
O
LYS
33
A
O
LYS
32
A
N
TYR
38
A
N
TYR
37
A
O
VAL
37
A
O
VAL
36
A
N
ILE
45
A
N
ILE
44
A
N
ARG
104
A
N
ARG
103
A
O
THR
285
A
O
THR
284
A
O
VAL
284
A
O
VAL
283
A
N
LEU
268
A
N
LEU
267
A
O
ILE
267
A
O
ILE
266
A
N
LEU
242
A
N
LEU
241
A
O
ILE
241
A
O
ILE
240
A
N
ALA
209
A
N
ALA
208
A
N
ILE
208
A
N
ILE
207
A
O
VAL
132
A
O
VAL
131
A
N
GLY
133
A
N
GLY
132
A
O
PHE
165
A
O
PHE
164
1
A
SER
2
A
SER
1
1
Y
1
-4.45
0.50
120.30
115.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
19
19
19
N
1
-6.24
0.90
118.30
112.06
A
A
A
CB
CG
OD2
ASP
ASP
ASP
41
41
41
N
1
-7.08
0.90
118.30
111.22
A
A
A
CB
CG
OD1
ASP
ASP
ASP
47
47
47
N
1
5.86
0.90
118.30
124.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
47
47
47
N
1
5.63
0.90
118.30
123.93
A
A
A
CB
CG
OD1
ASP
ASP
ASP
89
89
89
N
1
-7.12
0.90
118.30
111.18
A
A
A
CB
CG
OD2
ASP
ASP
ASP
89
89
89
N
1
-3.94
0.50
120.30
116.36
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
93
93
93
N
1
-5.91
0.90
118.30
112.39
A
A
A
CB
CG
OD2
ASP
ASP
ASP
103
103
103
N
1
-3.10
0.50
120.30
117.20
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
120
120
120
N
1
-15.75
2.10
128.40
112.65
A
A
A
C
N
CD
ARG
PRO
PRO
174
175
175
Y
1
-5.83
0.90
118.30
112.47
A
A
A
CB
CG
OD2
ASP
ASP
ASP
184
184
184
N
1
5.57
0.90
118.30
123.87
A
A
A
CB
CG
OD1
ASP
ASP
ASP
190
190
190
N
1
-7.94
0.90
118.30
110.36
A
A
A
CB
CG
OD2
ASP
ASP
ASP
190
190
190
N
1
5.94
0.90
118.30
124.24
A
A
A
CB
CG
OD1
ASP
ASP
ASP
197
197
197
N
1
-6.10
0.90
118.30
112.20
A
A
A
CB
CG
OD1
ASP
ASP
ASP
223
223
223
N
1
-13.69
1.70
113.30
99.61
A
A
A
CA
CB
CG
MET
MET
MET
226
226
226
N
1
6.91
0.90
118.30
125.21
A
A
A
CB
CG
OD1
ASP
ASP
ASP
307
307
307
N
1
-7.12
0.90
118.30
111.18
A
A
A
CB
CG
OD2
ASP
ASP
ASP
307
307
307
N
1
-6.12
0.90
118.30
112.18
A
A
A
CB
CG
OD2
ASP
ASP
ASP
319
319
319
N
1
3.90
0.50
120.30
124.20
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
323
323
323
N
1
-5.26
0.50
120.30
115.04
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
323
323
323
N
1
-5.90
0.90
118.30
112.40
A
A
A
CB
CG
OD2
ASP
ASP
ASP
324
324
324
N
1
7.07
0.90
118.30
125.37
A
A
A
CB
CG
OD1
ASP
ASP
ASP
343
343
343
N
1
-6.76
0.90
118.30
111.54
A
A
A
CB
CG
OD2
ASP
ASP
ASP
343
343
343
N
1
-6.65
0.90
118.30
111.65
A
A
A
CB
CG
OD1
ASP
ASP
ASP
349
349
349
N
1
-6.63
0.90
118.30
111.67
A
A
A
CB
CG
OD1
ASP
ASP
ASP
368
368
368
N
1
5.86
0.90
118.30
124.16
A
A
A
CB
CG
OD2
ASP
ASP
ASP
368
368
368
N
1
6.67
0.90
118.30
124.97
A
A
A
CB
CG
OD1
ASP
ASP
ASP
419
419
419
N
1
-6.41
0.90
118.30
111.89
A
A
A
CB
CG
OD2
ASP
ASP
ASP
419
419
419
N
1
A
A
CD
OE2
GLU
GLU
30
30
0.068
0.011
1.252
1.320
N
1
A
A
CD
OE2
GLU
GLU
63
63
0.069
0.011
1.252
1.321
N
1
A
A
CD
OE2
GLU
GLU
70
70
0.081
0.011
1.252
1.333
N
1
A
A
CD
OE1
GLU
GLU
113
113
0.073
0.011
1.252
1.325
N
1
A
A
CD
OE1
GLU
GLU
116
116
0.091
0.011
1.252
1.343
N
1
A
A
CD
OE2
GLU
GLU
178
178
0.099
0.011
1.252
1.351
N
1
A
A
CD
OE1
GLU
GLU
220
220
0.088
0.011
1.252
1.340
N
1
A
A
CD
OE1
GLU
GLU
291
291
0.077
0.011
1.252
1.329
N
1
A
A
CD
OE1
GLU
GLU
385
385
0.085
0.011
1.252
1.337
N
1
A
A
CD
OE1
GLU
GLU
415
415
0.079
0.011
1.252
1.331
N
1
A
ASP
5
-92.09
47.06
1
A
PRO
26
-90.78
47.16
1
A
GLN
52
-96.69
59.58
1
A
ALA
55
-52.91
61.16
1
A
LEU
108
-119.62
-157.28
1
A
SER
271
-167.00
-80.63
1
A
PHE
300
-153.03
88.15
1
A
LEU
359
-107.77
41.58
1
A
ALA
408
-166.36
77.46
0.1780000
2.8
8.
14224
1
0.0
2.8
8.
99
3375
29
0
3247
0.012
2.6
0.009
1.7
refinement
TNT
DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE) (DGD) (E.C.4.1.1.64) MUTANT WITH GLN 15 REPLACED BY HIS (Q15H) COMPLEXED WITH LITHIUM+ IN METAL-BINDING SITE 1
AN ALKALI METAL ION SIZE-DEPENDENT SWITCH IN THE ACTIVE SITE STRUCTURE OF DIALKYLGLYCINE DECARBOXYLASE
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
THE MOLECULE IS A TETRAMER OF IDENTICAL SUBUNITS. THIS
ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH
COMPRISES ONE MONOMER. THE TETRAMER CAN BE GENERATED BY
CRYSTALLOGRAPHIC DYADS. APPLYING THE FOLLOWING
TRANSFORMATION TO THE COORDINATES IN THIS ENTRY WILL YIELD
A DIMER:
MTRIX1 1 -0.500000 0.866000 0.000000 0.00000
MTRIX2 1 0.866000 0.500000 0.000000 0.00000
MTRIX3 1 0.000000 0.000000 1.000000 28.87000
APPLYING THE FOLLOWING TRANSFORMATION TO THE DIMER WILL
YIELD THE TETRAMER:
MTRIX1 2 -1.000000 0.000000 0.000000 76.40000
MTRIX2 2 0.000000 -1.000000 0.000000 132.20000
MTRIX3 2 0.000000 0.000000 1.000000 0.00000
A
ALA
7
A
ALA
6
HELX_P
A
HIS
16
A
HIS
15
1
H1
10
A
PRO
62
A
PRO
61
HELX_P
A
ALA
72
A
ALA
71
1
H2
11
A
ARG
85
A
ARG
84
HELX_P
A
ILE
97
A
ILE
96
1
H3
13
A
GLY
111
A
GLY
110
HELX_P
A
THR
126
A
THR
125
1
H4
16
A
GLY
143
A
GLY
142
HELX_P
A
SER
147
A
SER
146
1
H5
5
A
TYR
185
A
TYR
184
HELX_P
A
GLN
199
A
GLN
198
1
H6
15
A
TYR
225
A
TYR
224
HELX_P
A
ALA
235
A
ALA
234
1
H7
11
A
ALA
257
A
ALA
256
HELX_P
A
ASP
261
A
ASP
260
1
H8
5
A
ALA
287
A
ALA
286
HELX_P
A
LEU
296
A
LEU
295
1
H9
10
A
PRO
308
A
PRO
307
HELX_P
A
ARG
323
A
ARG
322
1
H10
16
A
LEU
326
A
LEU
325
HELX_P
A
ARG
347
A
ARG
346
1
H11
22
A
LEU
378
A
LEU
377
HELX_P
A
LEU
389
A
LEU
388
1
H12
12
A
GLU
415
A
GLU
414
HELX_P
A
ARG
431
A
ARG
430
1
H13
17
covale
1.300
A
LYS
272
A
NZ
LYS
271
1_555
A
PLP
437
D
C4A
PLP
1_555
metalc
2.426
A
NA
435
B
NA
NA
1_555
A
ALA
95
A
O
ALA
94
1_555
metalc
2.421
A
NA
435
B
NA
NA
1_555
A
LEU
102
A
O
LEU
101
1_555
metalc
2.292
A
NA
435
B
NA
NA
1_555
A
HOH
540
F
O
HOH
1_555
metalc
2.230
A
NA
435
B
NA
NA
1_555
A
PRO
99
A
O
PRO
98
1_555
metalc
2.409
A
NA
435
B
NA
NA
1_555
A
THR
98
A
O
THR
97
1_555
metalc
1.915
A
LI
436
C
LI
LI
1_555
A
HOH
552
F
O
HOH
1_555
metalc
1.923
A
LI
436
C
LI
LI
1_555
A
LEU
78
A
O
LEU
77
1_555
metalc
1.900
A
LI
436
C
LI
LI
1_555
A
HOH
539
F
O
HOH
1_555
metalc
1.868
A
LI
436
C
LI
LI
1_555
A
ASP
307
A
OD1
ASP
306
1_555
metalc
2.858
A
THR
98
A
OG1
THR
97
1_555
A
NA
435
B
NA
NA
1_555
LYASE
LYASE
DGDA_BURCE
UNP
1
1
P16932
SLNDDATFWRNARQHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFSG
MLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAA
VGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLI
LDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVV
QRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGM
GGVFRIAPPLTVSEDEIDLGLSLLGQAIERAL
1
432
1DGD
2
433
P16932
A
1
1
432
1
GLN
CONFLICT
HIS
15
1DGD
A
P16932
UNP
14
14
3
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
A
GLU
30
A
GLU
29
A
LYS
33
A
LYS
32
A
PHE
36
A
PHE
35
A
ASP
39
A
ASP
38
A
ARG
43
A
ARG
42
A
ASP
47
A
ASP
46
A
ARG
104
A
ARG
103
A
SER
109
A
SER
108
A
LEU
280
A
LEU
279
A
THR
285
A
THR
284
A
ASP
266
A
ASP
265
A
LEU
270
A
LEU
269
A
LEU
239
A
LEU
238
A
GLU
244
A
GLU
243
A
LEU
204
A
LEU
203
A
ALA
209
A
ALA
208
A
GLU
130
A
GLU
129
A
PHE
134
A
PHE
133
A
GLY
163
A
GLY
162
A
ILE
167
A
ILE
166
ACTIVE SITE: THE COFACTOR PLP IS COVALENTLY BOUND
Author
22
METAL BINDING SITE 1 (NEAR THE ACTIVE SITE): LIGANDS TO THE LI+ ION ARE INDICATED
Author
5
METAL BINDING SITE 2: LIGANDS TO THE NA+ ION ARE INDICATED
Author
6
BINDING SITE FOR RESIDUE NA A 435
Software
5
BINDING SITE FOR RESIDUE PLP A 437
Software
16
BINDING SITE FOR RESIDUE MES A 434
Software
8
A
GLN
52
A
GLN
51
22
1_555
A
MET
53
A
MET
52
22
1_555
A
PHE
79
A
PHE
78
22
1_555
A
THR
110
A
THR
109
22
1_555
A
GLY
111
A
GLY
110
22
1_555
A
ASN
115
A
ASN
114
22
1_555
A
SER
137
A
SER
136
22
1_555
A
TRP
138
A
TRP
137
22
1_555
A
MET
141
A
MET
140
22
1_555
A
GLU
210
A
GLU
209
22
1_555
A
SER
214
A
SER
213
22
1_555
A
SER
215
A
SER
214
22
1_555
A
ASP
243
A
ASP
242
22
1_555
A
ALA
245
A
ALA
244
22
1_555
A
GLN
246
A
GLN
245
22
1_555
A
LYS
272
A
LYS
271
22
1_555
A
PLP
437
D
PLP
22
1_555
A
TYR
301
A
TYR
300
22
1_555
A
THR
303
A
THR
302
22
1_555
A
ASN
394
A
ASN
393
22
1_555
A
ARG
406
A
ARG
405
22
1_555
A
MES
434
E
MES
22
1_555
A
LEU
78
A
LEU
77
5
1_555
A
ASP
307
A
ASP
306
5
1_555
A
HOH
539
F
HOH
5
1_555
A
HOH
552
F
HOH
5
1_555
A
LI
436
C
LI
5
1_555
A
ALA
95
A
ALA
94
6
1_555
A
THR
98
A
THR
97
6
1_555
A
PRO
99
A
PRO
98
6
1_555
A
LEU
102
A
LEU
101
6
1_555
A
HOH
540
F
HOH
6
1_555
A
NA
435
B
NA
6
1_555
A
ALA
95
A
ALA
94
5
1_555
A
THR
98
A
THR
97
5
1_555
A
PRO
99
A
PRO
98
5
1_555
A
LEU
102
A
LEU
101
5
1_555
A
HOH
540
F
HOH
5
1_555
A
THR
110
A
THR
109
16
1_555
A
GLY
111
A
GLY
110
16
1_555
A
ALA
112
A
ALA
111
16
1_555
A
ASN
115
A
ASN
114
16
1_555
A
TRP
138
A
TRP
137
16
1_555
A
HIS
139
A
HIS
138
16
1_555
A
GLU
210
A
GLU
209
16
1_555
A
ASP
243
A
ASP
242
16
1_555
A
ALA
245
A
ALA
244
16
1_555
A
GLN
246
A
GLN
245
16
1_555
A
LYS
272
A
LYS
271
16
1_555
A
THR
302
A
THR
301
16
7_555
A
THR
303
A
THR
302
16
7_555
A
MES
434
E
MES
16
1_555
A
HOH
555
F
HOH
16
7_555
A
HOH
557
F
HOH
16
1_555
A
GLN
52
A
GLN
51
8
1_555
A
TRP
138
A
TRP
137
8
1_555
A
ALA
152
A
ALA
151
8
1_555
A
SER
215
A
SER
214
8
1_555
A
GLN
246
A
GLN
245
8
1_555
A
LYS
272
A
LYS
271
8
1_555
A
ARG
406
A
ARG
405
8
1_555
A
PLP
437
D
PLP
8
1_555
181
P 64 2 2