1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ghosh, M. Kumar, N.V. Varshney, U. Chary, K.V.R. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C9 H13 N2 O8 P 308.182 y 2'-DEOXYURIDINE-5'-MONOPHOSPHATE DNA linking UK Nucleic Acids Res. NARHAD 0389 0305-1048 28 1906 1912 10.1093/nar/28.9.1906 10756190 Structural basis for uracil DNA glycosylase interaction with uracil: NMR study. 2000 10.2210/pdb1dgo/pdb pdb_00001dgo 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 5483.537 URACIL CONTAINING HAIRPIN DNA 1 syn polymer no no (DA)(DG)(DG)(DA)(DT)(DC)(DC)(DT)(DU)(DT)(DT)(DG)(DG)(DA)(DT)(DC)(DC)(DT) AGGATCCTUTTGGATCCT A polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n 6.191 1 20 A 1 A 18 1.406 A_DA1:DT18_A 1 -7.528 0.095 0.032 -0.084 2.904 1 19 A 2 A 17 -0.646 A_DG2:DC17_A 2 2.122 -0.539 -0.125 -0.228 -0.919 1 19 A 3 A 16 -1.088 A_DG3:DC16_A 3 6.947 -0.508 -0.252 -0.234 -1.170 1 20 A 4 A 15 0.541 A_DA4:DT15_A 4 3.862 0.085 -0.371 -0.110 0.568 1 20 A 5 A 14 0.660 A_DT5:DA14_A 5 4.375 -0.034 -0.410 -0.132 -4.430 1 19 A 6 A 13 -0.642 A_DC6:DG13_A 6 6.985 0.561 -0.251 -0.232 -3.110 1 19 A 7 A 12 -0.230 A_DC7:DG12_A 7 9.643 0.717 -0.252 -0.300 3.169 29.839 A A 1 2 1.788 A A 18 17 3.223 0.920 0.201 -1.616 AA_DA1DG2:DC17DT18_AA 1 -0.586 1.139 29.820 -3.325 -0.509 3.278 34.044 A A 2 3 0.987 A A 17 16 3.294 0.578 0.464 -1.714 AA_DG2DG3:DC16DC17_AA 2 1.115 -1.905 34.022 -3.021 -0.614 3.234 37.156 A A 3 4 1.929 A A 16 15 3.275 1.228 0.285 -1.539 AA_DG3DA4:DT15DC16_AA 3 1.798 -2.823 37.094 -2.578 -0.209 3.551 31.153 A A 4 5 -7.270 A A 15 14 3.372 -3.894 0.076 -1.672 AA_DA4DT5:DA14DT15_AA 4 -0.124 0.232 30.914 -2.324 -0.166 2.980 35.203 A A 5 6 10.568 A A 14 13 3.330 6.358 0.166 -1.709 AA_DT5DC6:DG13DA14_AA 5 0.146 -0.243 34.641 -3.746 -0.253 2.989 30.495 A A 6 7 6.879 A A 13 12 3.209 3.609 -0.033 -1.683 AA_DC6DC7:DG12DG13_AA 6 1.252 -2.386 30.260 -3.884 0.300 database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-05-03 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name Solution structure of a uracil containing hairpin DNA. RCSB Y RCSB 1999-11-24 REL REL Custom made by Ransom Hill Biosciences, Inc.,Ramona CA (USA) sample This structure was determined using standard 2D homonuclear techniques structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations,structures with the lowest energy 200 9 2D NOESY E-COSY 2D NOESY 7.0 1 atm 305 K 7.0 1 atm 295 K The structures are based on a total of 225 restraints, 145 are NOE-derived distance constraints, 64 dihedral aangle restraints, 16 distance restraints from hydrogen bonds. Restrained molecular dynamics and Energy minimization. 1 zero violations and lowest energy 5 mM oligo; no buffer; pH = 7.0 Temp = 305K; 99% D2O 99% D2O 5 mM oligo; no buffer; pH = 7.0 Temp = 305K; 90% H20 +10% D2O 90% H20 +10% D2O varian collection VNMR 6.1 MSI structure solution Discover 97 varian data analysis VNMR 6.1 Bruker collection UXNMR 3.0 MSI processing Felix 97 MSI data analysis Felix 97 MSI refinement Discover 97 600 Varian UNITYPLUS 500 Bruker AMX A 1 n 1 DA 1 A G 2 n 2 DG 2 A G 3 n 3 DG 3 A A 4 n 4 DA 4 A T 5 n 5 DT 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A T 8 n 8 DT 8 A U 9 n 9 DU 9 A T 1 n 10 DT 10 A T 2 n 11 DT 11 A G 3 n 12 DG 12 A G 4 n 13 DG 13 A A 5 n 14 DA 14 A T 6 n 15 DT 15 A C 7 n 16 DC 16 A C 8 n 17 DC 17 A T 9 n 18 DT 18 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A DT 8 0.117 SIDE CHAIN 1 A DU 9 0.106 SIDE CHAIN 1 A DT 10 0.181 SIDE CHAIN 2 A DT 8 0.117 SIDE CHAIN 2 A DU 9 0.106 SIDE CHAIN 2 A DT 10 0.181 SIDE CHAIN 3 A DT 8 0.117 SIDE CHAIN 3 A DU 9 0.111 SIDE CHAIN 3 A DT 10 0.174 SIDE CHAIN 4 A DT 8 0.118 SIDE CHAIN 4 A DU 9 0.109 SIDE CHAIN 4 A DT 10 0.181 SIDE CHAIN 5 A DT 8 0.119 SIDE CHAIN 5 A DU 9 0.107 SIDE CHAIN 5 A DT 10 0.185 SIDE CHAIN 6 A DT 8 0.117 SIDE CHAIN 6 A DU 9 0.106 SIDE CHAIN 6 A DT 10 0.183 SIDE CHAIN 7 A DT 8 0.116 SIDE CHAIN 7 A DU 9 0.105 SIDE CHAIN 7 A DT 10 0.180 SIDE CHAIN 8 A DT 8 0.113 SIDE CHAIN 8 A DU 9 0.109 SIDE CHAIN 8 A DT 10 0.172 SIDE CHAIN 9 A DT 8 0.117 SIDE CHAIN 9 A DU 9 0.109 SIDE CHAIN 9 A DT 10 0.189 SIDE CHAIN 1 -3.23 0.50 117.00 113.77 A A A C4 C5 C6 DA DA DA 1 1 1 N 1 3.59 0.50 117.70 121.29 A A A C5 C6 N1 DA DA DA 1 1 1 N 1 -4.23 0.60 118.60 114.37 A A A N1 C6 N6 DA DA DA 1 1 1 N 1 2.82 0.30 108.30 111.12 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 2.17 0.30 108.30 110.47 A A A O4' C1' N9 DG DG DG 3 3 3 N 1 -3.10 0.50 117.00 113.90 A A A C4 C5 C6 DA DA DA 4 4 4 N 1 3.57 0.50 117.70 121.27 A A A C5 C6 N1 DA DA DA 4 4 4 N 1 -4.04 0.60 118.60 114.56 A A A N1 C6 N6 DA DA DA 4 4 4 N 1 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 5 5 5 N 1 -4.23 0.70 121.90 117.67 A A A N3 C2 O2 DC DC DC 6 6 6 N 1 3.09 0.30 108.30 111.39 A A A O4' C1' N1 DC DC DC 7 7 7 N 1 -4.21 0.70 121.90 117.69 A A A N3 C2 O2 DC DC DC 7 7 7 N 1 -6.19 0.80 105.90 99.71 A A A O4' C1' C2' DT DT DT 8 8 8 N 1 8.02 0.30 108.30 116.32 A A A O4' C1' N1 DT DT DT 8 8 8 N 1 8.60 0.30 108.30 116.90 A A A O4' C1' N1 DU DU DU 9 9 9 N 1 4.81 0.30 108.30 113.11 A A A O4' C1' N1 DT DT DT 10 10 10 N 1 -5.22 0.60 122.30 117.08 A A A N3 C2 O2 DT DT DT 10 10 10 N 1 -4.23 0.60 122.90 118.67 A A A C6 C5 C7 DT DT DT 10 10 10 N 1 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DT DT DT 11 11 11 N 1 -4.05 0.60 122.30 118.25 A A A N3 C2 O2 DT DT DT 11 11 11 N 1 -3.88 0.60 122.90 119.02 A A A C6 C5 C7 DT DT DT 11 11 11 N 1 2.20 0.30 108.30 110.50 A A A O4' C1' N9 DG DG DG 13 13 13 N 1 -3.09 0.50 117.00 113.91 A A A C4 C5 C6 DA DA DA 14 14 14 N 1 3.52 0.50 117.70 121.22 A A A C5 C6 N1 DA DA DA 14 14 14 N 1 -3.93 0.60 118.60 114.67 A A A N1 C6 N6 DA DA DA 14 14 14 N 1 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 15 15 15 N 1 -3.80 0.60 122.30 118.50 A A A N3 C2 O2 DT DT DT 18 18 18 N 2 -3.23 0.50 117.00 113.77 A A A C4 C5 C6 DA DA DA 1 1 1 N 2 3.59 0.50 117.70 121.29 A A A C5 C6 N1 DA DA DA 1 1 1 N 2 -4.23 0.60 118.60 114.37 A A A N1 C6 N6 DA DA DA 1 1 1 N 2 2.82 0.30 108.30 111.12 A A A O4' C1' N9 DG DG DG 2 2 2 N 2 2.17 0.30 108.30 110.47 A A A O4' C1' N9 DG DG DG 3 3 3 N 2 -3.10 0.50 117.00 113.90 A A A C4 C5 C6 DA DA DA 4 4 4 N 2 3.57 0.50 117.70 121.27 A A A C5 C6 N1 DA DA DA 4 4 4 N 2 -4.04 0.60 118.60 114.56 A A A N1 C6 N6 DA DA DA 4 4 4 N 2 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 5 5 5 N 2 -4.23 0.70 121.90 117.67 A A A N3 C2 O2 DC DC DC 6 6 6 N 2 3.09 0.30 108.30 111.39 A A A O4' C1' N1 DC DC DC 7 7 7 N 2 -4.21 0.70 121.90 117.69 A A A N3 C2 O2 DC DC DC 7 7 7 N 2 -6.19 0.80 105.90 99.71 A A A O4' C1' C2' DT DT DT 8 8 8 N 2 8.02 0.30 108.30 116.32 A A A O4' C1' N1 DT DT DT 8 8 8 N 2 8.60 0.30 108.30 116.90 A A A O4' C1' N1 DU DU DU 9 9 9 N 2 4.81 0.30 108.30 113.11 A A A O4' C1' N1 DT DT DT 10 10 10 N 2 -5.22 0.60 122.30 117.08 A A A N3 C2 O2 DT DT DT 10 10 10 N 2 -4.23 0.60 122.90 118.67 A A A C6 C5 C7 DT DT DT 10 10 10 N 2 2.40 0.30 108.30 110.70 A A A O4' C1' N1 DT DT DT 11 11 11 N 2 -4.05 0.60 122.30 118.25 A A A N3 C2 O2 DT DT DT 11 11 11 N 2 -3.88 0.60 122.90 119.02 A A A C6 C5 C7 DT DT DT 11 11 11 N 2 2.20 0.30 108.30 110.50 A A A O4' C1' N9 DG DG DG 13 13 13 N 2 -3.09 0.50 117.00 113.91 A A A C4 C5 C6 DA DA DA 14 14 14 N 2 3.52 0.50 117.70 121.22 A A A C5 C6 N1 DA DA DA 14 14 14 N 2 -3.93 0.60 118.60 114.67 A A A N1 C6 N6 DA DA DA 14 14 14 N 2 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 15 15 15 N 2 -3.80 0.60 122.30 118.50 A A A N3 C2 O2 DT DT DT 18 18 18 N 3 -3.24 0.50 117.00 113.76 A A A C4 C5 C6 DA DA DA 1 1 1 N 3 3.60 0.50 117.70 121.30 A A A C5 C6 N1 DA DA DA 1 1 1 N 3 -4.23 0.60 118.60 114.37 A A A N1 C6 N6 DA DA DA 1 1 1 N 3 2.75 0.30 108.30 111.05 A A A O4' C1' N9 DG DG DG 2 2 2 N 3 3.02 0.50 111.50 114.52 A A A C5 C6 N1 DG DG DG 2 2 2 N 3 2.19 0.30 108.30 110.49 A A A O4' C1' N9 DG DG DG 3 3 3 N 3 -3.11 0.50 117.00 113.89 A A A C4 C5 C6 DA DA DA 4 4 4 N 3 3.60 0.50 117.70 121.30 A A A C5 C6 N1 DA DA DA 4 4 4 N 3 -4.14 0.60 118.60 114.46 A A A N1 C6 N6 DA DA DA 4 4 4 N 3 -3.71 0.60 122.30 118.59 A A A N3 C2 O2 DT DT DT 5 5 5 N 3 2.65 0.30 108.30 110.95 A A A O4' C1' N1 DC DC DC 7 7 7 N 3 -4.28 0.70 121.90 117.62 A A A N3 C2 O2 DC DC DC 7 7 7 N 3 -5.98 0.80 105.90 99.92 A A A O4' C1' C2' DT DT DT 8 8 8 N 3 7.99 0.30 108.30 116.29 A A A O4' C1' N1 DT DT DT 8 8 8 N 3 8.40 0.30 108.30 116.70 A A A O4' C1' N1 DU DU DU 9 9 9 N 3 4.09 0.30 108.30 112.39 A A A O4' C1' N1 DT DT DT 10 10 10 N 3 -5.19 0.60 122.30 117.11 A A A N3 C2 O2 DT DT DT 10 10 10 N 3 -4.05 0.60 122.90 118.85 A A A C6 C5 C7 DT DT DT 10 10 10 N 3 2.77 0.30 108.30 111.07 A A A O4' C1' N1 DT DT DT 11 11 11 N 3 -4.27 0.60 122.30 118.03 A A A N3 C2 O2 DT DT DT 11 11 11 N 3 -3.82 0.60 122.90 119.08 A A A C6 C5 C7 DT DT DT 11 11 11 N 3 2.78 0.30 108.30 111.08 A A A O4' C1' N9 DG DG DG 12 12 12 N 3 2.33 0.30 108.30 110.63 A A A O4' C1' N9 DG DG DG 13 13 13 N 3 3.03 0.50 111.50 114.53 A A A C5 C6 N1 DG DG DG 13 13 13 N 3 -3.15 0.50 117.00 113.85 A A A C4 C5 C6 DA DA DA 14 14 14 N 3 3.56 0.50 117.70 121.26 A A A C5 C6 N1 DA DA DA 14 14 14 N 3 -3.92 0.60 118.60 114.68 A A A N1 C6 N6 DA DA DA 14 14 14 N 3 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 15 15 15 N 3 -3.76 0.60 122.30 118.54 A A A N3 C2 O2 DT DT DT 18 18 18 N 4 -3.22 0.50 117.00 113.78 A A A C4 C5 C6 DA DA DA 1 1 1 N 4 3.58 0.50 117.70 121.28 A A A C5 C6 N1 DA DA DA 1 1 1 N 4 -4.18 0.60 118.60 114.42 A A A N1 C6 N6 DA DA DA 1 1 1 N 4 2.77 0.30 108.30 111.07 A A A O4' C1' N9 DG DG DG 2 2 2 N 4 3.05 0.50 111.50 114.55 A A A C5 C6 N1 DG DG DG 2 2 2 N 4 2.22 0.30 108.30 110.52 A A A O4' C1' N9 DG DG DG 3 3 3 N 4 -3.10 0.50 117.00 113.90 A A A C4 C5 C6 DA DA DA 4 4 4 N 4 3.59 0.50 117.70 121.29 A A A C5 C6 N1 DA DA DA 4 4 4 N 4 -4.09 0.60 118.60 114.51 A A A N1 C6 N6 DA DA DA 4 4 4 N 4 -3.63 0.60 122.30 118.67 A A A N3 C2 O2 DT DT DT 5 5 5 N 4 -4.23 0.70 121.90 117.67 A A A N3 C2 O2 DC DC DC 6 6 6 N 4 2.19 0.30 108.30 110.49 A A A O4' C1' N1 DC DC DC 7 7 7 N 4 -5.30 0.80 105.90 100.60 A A A O4' C1' C2' DT DT DT 8 8 8 N 4 7.51 0.30 108.30 115.81 A A A O4' C1' N1 DT DT DT 8 8 8 N 4 8.47 0.30 108.30 116.77 A A A O4' C1' N1 DU DU DU 9 9 9 N 4 4.22 0.30 108.30 112.52 A A A O4' C1' N1 DT DT DT 10 10 10 N 4 -5.18 0.60 122.30 117.12 A A A N3 C2 O2 DT DT DT 10 10 10 N 4 -3.97 0.60 122.90 118.93 A A A C6 C5 C7 DT DT DT 10 10 10 N 4 3.21 0.30 108.30 111.51 A A A O4' C1' N1 DT DT DT 11 11 11 N 4 -4.19 0.60 122.30 118.11 A A A N3 C2 O2 DT DT DT 11 11 11 N 4 -3.94 0.60 122.90 118.96 A A A C6 C5 C7 DT DT DT 11 11 11 N 4 2.10 0.30 108.30 110.40 A A A O4' C1' N9 DG DG DG 13 13 13 N 4 -3.06 0.50 117.00 113.94 A A A C4 C5 C6 DA DA DA 14 14 14 N 4 3.50 0.50 117.70 121.20 A A A C5 C6 N1 DA DA DA 14 14 14 N 4 -3.97 0.60 118.60 114.63 A A A N1 C6 N6 DA DA DA 14 14 14 N 4 -3.81 0.60 122.30 118.49 A A A N3 C2 O2 DT DT DT 15 15 15 N 4 -4.20 0.70 121.90 117.70 A A A N3 C2 O2 DC DC DC 17 17 17 N 4 -3.77 0.60 122.30 118.53 A A A N3 C2 O2 DT DT DT 18 18 18 N 5 -3.25 0.50 117.00 113.75 A A A C4 C5 C6 DA DA DA 1 1 1 N 5 3.59 0.50 117.70 121.29 A A A C5 C6 N1 DA DA DA 1 1 1 N 5 -4.17 0.60 118.60 114.43 A A A N1 C6 N6 DA DA DA 1 1 1 N 5 2.78 0.30 108.30 111.08 A A A O4' C1' N9 DG DG DG 2 2 2 N 5 2.11 0.30 108.30 110.41 A A A O4' C1' N9 DG DG DG 3 3 3 N 5 -3.16 0.50 117.00 113.84 A A A C4 C5 C6 DA DA DA 4 4 4 N 5 3.61 0.50 117.70 121.31 A A A C5 C6 N1 DA DA DA 4 4 4 N 5 -3.93 0.60 118.60 114.67 A A A N1 C6 N6 DA DA DA 4 4 4 N 5 2.56 0.30 108.30 110.86 A A A O4' C1' N1 DC DC DC 7 7 7 N 5 -5.53 0.80 105.90 100.37 A A A O4' C1' C2' DT DT DT 8 8 8 N 5 7.69 0.30 108.30 115.99 A A A O4' C1' N1 DT DT DT 8 8 8 N 5 8.57 0.30 108.30 116.87 A A A O4' C1' N1 DU DU DU 9 9 9 N 5 4.98 0.30 108.30 113.28 A A A O4' C1' N1 DT DT DT 10 10 10 N 5 -5.19 0.60 122.30 117.11 A A A N3 C2 O2 DT DT DT 10 10 10 N 5 -4.24 0.60 122.90 118.66 A A A C6 C5 C7 DT DT DT 10 10 10 N 5 2.63 0.30 108.30 110.93 A A A O4' C1' N1 DT DT DT 11 11 11 N 5 -4.02 0.60 122.30 118.28 A A A N3 C2 O2 DT DT DT 11 11 11 N 5 -3.99 0.60 122.90 118.91 A A A C6 C5 C7 DT DT DT 11 11 11 N 5 2.29 0.30 108.30 110.59 A A A O4' C1' N9 DG DG DG 13 13 13 N 5 -3.13 0.50 117.00 113.87 A A A C4 C5 C6 DA DA DA 14 14 14 N 5 3.57 0.50 117.70 121.27 A A A C5 C6 N1 DA DA DA 14 14 14 N 5 -4.19 0.60 118.60 114.41 A A A N1 C6 N6 DA DA DA 14 14 14 N 5 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 15 15 15 N 5 -3.99 0.60 122.90 118.91 A A A C6 C5 C7 DT DT DT 15 15 15 N 5 -4.25 0.70 121.90 117.65 A A A N3 C2 O2 DC DC DC 17 17 17 N 5 -3.75 0.60 122.30 118.55 A A A N3 C2 O2 DT DT DT 18 18 18 N 6 -3.26 0.50 117.00 113.74 A A A C4 C5 C6 DA DA DA 1 1 1 N 6 3.58 0.50 117.70 121.28 A A A C5 C6 N1 DA DA DA 1 1 1 N 6 -4.22 0.60 118.60 114.38 A A A N1 C6 N6 DA DA DA 1 1 1 N 6 2.75 0.30 108.30 111.05 A A A O4' C1' N9 DG DG DG 2 2 2 N 6 2.12 0.30 108.30 110.42 A A A O4' C1' N9 DG DG DG 3 3 3 N 6 -3.19 0.50 117.00 113.81 A A A C4 C5 C6 DA DA DA 4 4 4 N 6 3.64 0.50 117.70 121.34 A A A C5 C6 N1 DA DA DA 4 4 4 N 6 -3.86 0.60 118.60 114.74 A A A N1 C6 N6 DA DA DA 4 4 4 N 6 -3.68 0.60 122.30 118.62 A A A N3 C2 O2 DT DT DT 5 5 5 N 6 2.61 0.30 108.30 110.91 A A A O4' C1' N1 DC DC DC 7 7 7 N 6 -4.23 0.70 121.90 117.67 A A A N3 C2 O2 DC DC DC 7 7 7 N 6 -5.76 0.80 105.90 100.14 A A A O4' C1' C2' DT DT DT 8 8 8 N 6 7.89 0.30 108.30 116.19 A A A O4' C1' N1 DT DT DT 8 8 8 N 6 8.65 0.30 108.30 116.95 A A A O4' C1' N1 DU DU DU 9 9 9 N 6 5.34 0.30 108.30 113.64 A A A O4' C1' N1 DT DT DT 10 10 10 N 6 -5.21 0.60 122.30 117.09 A A A N3 C2 O2 DT DT DT 10 10 10 N 6 -4.26 0.60 122.90 118.64 A A A C6 C5 C7 DT DT DT 10 10 10 N 6 2.00 0.30 108.30 110.30 A A A O4' C1' N1 DT DT DT 11 11 11 N 6 -4.01 0.60 122.30 118.29 A A A N3 C2 O2 DT DT DT 11 11 11 N 6 -3.97 0.60 122.90 118.93 A A A C6 C5 C7 DT DT DT 11 11 11 N 6 2.11 0.30 108.30 110.41 A A A O4' C1' N9 DG DG DG 13 13 13 N 6 -3.13 0.50 117.00 113.87 A A A C4 C5 C6 DA DA DA 14 14 14 N 6 3.59 0.50 117.70 121.29 A A A C5 C6 N1 DA DA DA 14 14 14 N 6 -4.16 0.60 118.60 114.44 A A A N1 C6 N6 DA DA DA 14 14 14 N 6 -3.79 0.60 122.30 118.51 A A A N3 C2 O2 DT DT DT 15 15 15 N 6 -3.99 0.60 122.90 118.91 A A A C6 C5 C7 DT DT DT 15 15 15 N 6 -4.27 0.70 121.90 117.63 A A A N3 C2 O2 DC DC DC 17 17 17 N 6 -3.76 0.60 122.30 118.54 A A A N3 C2 O2 DT DT DT 18 18 18 N 7 -3.21 0.50 117.00 113.79 A A A C4 C5 C6 DA DA DA 1 1 1 N 7 3.58 0.50 117.70 121.28 A A A C5 C6 N1 DA DA DA 1 1 1 N 7 -4.21 0.60 118.60 114.39 A A A N1 C6 N6 DA DA DA 1 1 1 N 7 2.79 0.30 108.30 111.09 A A A O4' C1' N9 DG DG DG 2 2 2 N 7 3.02 0.50 111.50 114.52 A A A C5 C6 N1 DG DG DG 2 2 2 N 7 2.12 0.30 108.30 110.42 A A A O4' C1' N9 DG DG DG 3 3 3 N 7 -3.10 0.50 117.00 113.90 A A A C4 C5 C6 DA DA DA 4 4 4 N 7 3.64 0.50 117.70 121.34 A A A C5 C6 N1 DA DA DA 4 4 4 N 7 -4.09 0.60 118.60 114.51 A A A N1 C6 N6 DA DA DA 4 4 4 N 7 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 5 5 5 N 7 1.82 0.30 108.30 110.12 A A A O4' C1' N1 DC DC DC 6 6 6 N 7 -4.22 0.70 121.90 117.68 A A A N3 C2 O2 DC DC DC 6 6 6 N 7 3.20 0.30 108.30 111.50 A A A O4' C1' N1 DC DC DC 7 7 7 N 7 -4.30 0.70 121.90 117.60 A A A N3 C2 O2 DC DC DC 7 7 7 N 7 -6.35 0.80 105.90 99.55 A A A O4' C1' C2' DT DT DT 8 8 8 N 7 8.24 0.30 108.30 116.54 A A A O4' C1' N1 DT DT DT 8 8 8 N 7 8.65 0.30 108.30 116.95 A A A O4' C1' N1 DU DU DU 9 9 9 N 7 5.20 0.30 108.30 113.50 A A A O4' C1' N1 DT DT DT 10 10 10 N 7 -5.20 0.60 122.30 117.10 A A A N3 C2 O2 DT DT DT 10 10 10 N 7 -4.27 0.60 122.90 118.63 A A A C6 C5 C7 DT DT DT 10 10 10 N 7 1.91 0.30 108.30 110.21 A A A O4' C1' N1 DT DT DT 11 11 11 N 7 -4.04 0.60 122.30 118.26 A A A N3 C2 O2 DT DT DT 11 11 11 N 7 -3.87 0.60 122.90 119.03 A A A C6 C5 C7 DT DT DT 11 11 11 N 7 2.09 0.30 108.30 110.39 A A A O4' C1' N9 DG DG DG 13 13 13 N 7 -3.08 0.50 117.00 113.92 A A A C4 C5 C6 DA DA DA 14 14 14 N 7 3.54 0.50 117.70 121.24 A A A C5 C6 N1 DA DA DA 14 14 14 N 7 -3.91 0.60 118.60 114.69 A A A N1 C6 N6 DA DA DA 14 14 14 N 7 -3.81 0.60 122.30 118.49 A A A N3 C2 O2 DT DT DT 15 15 15 N 7 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 18 18 18 N 8 -3.25 0.50 117.00 113.75 A A A C4 C5 C6 DA DA DA 1 1 1 N 8 3.58 0.50 117.70 121.28 A A A C5 C6 N1 DA DA DA 1 1 1 N 8 -4.21 0.60 118.60 114.39 A A A N1 C6 N6 DA DA DA 1 1 1 N 8 2.79 0.30 108.30 111.09 A A A O4' C1' N9 DG DG DG 2 2 2 N 8 2.11 0.30 108.30 110.41 A A A O4' C1' N9 DG DG DG 3 3 3 N 8 -3.16 0.50 117.00 113.84 A A A C4 C5 C6 DA DA DA 4 4 4 N 8 3.62 0.50 117.70 121.32 A A A C5 C6 N1 DA DA DA 4 4 4 N 8 -3.85 0.60 118.60 114.75 A A A N1 C6 N6 DA DA DA 4 4 4 N 8 -3.74 0.60 122.30 118.56 A A A N3 C2 O2 DT DT DT 5 5 5 N 8 -3.60 0.60 122.90 119.30 A A A C6 C5 C7 DT DT DT 5 5 5 N 8 1.92 0.30 108.30 110.22 A A A O4' C1' N1 DC DC DC 6 6 6 N 8 2.98 0.30 108.30 111.28 A A A O4' C1' N1 DC DC DC 7 7 7 N 8 -6.04 0.80 105.90 99.86 A A A O4' C1' C2' DT DT DT 8 8 8 N 8 8.08 0.30 108.30 116.38 A A A O4' C1' N1 DT DT DT 8 8 8 N 8 8.46 0.30 108.30 116.76 A A A O4' C1' N1 DU DU DU 9 9 9 N 8 4.00 0.30 108.30 112.30 A A A O4' C1' N1 DT DT DT 10 10 10 N 8 -5.26 0.60 122.30 117.04 A A A N3 C2 O2 DT DT DT 10 10 10 N 8 -3.97 0.60 122.90 118.93 A A A C6 C5 C7 DT DT DT 10 10 10 N 8 2.60 0.30 108.30 110.90 A A A O4' C1' N1 DT DT DT 11 11 11 N 8 -4.29 0.60 122.30 118.01 A A A N3 C2 O2 DT DT DT 11 11 11 N 8 -3.78 0.60 122.90 119.12 A A A C6 C5 C7 DT DT DT 11 11 11 N 8 2.04 0.30 108.30 110.34 A A A O4' C1' N9 DG DG DG 13 13 13 N 8 -3.09 0.50 117.00 113.91 A A A C4 C5 C6 DA DA DA 14 14 14 N 8 3.54 0.50 117.70 121.24 A A A C5 C6 N1 DA DA DA 14 14 14 N 8 -4.04 0.60 118.60 114.56 A A A N1 C6 N6 DA DA DA 14 14 14 N 8 1.85 0.30 108.30 110.15 A A A O4' C1' N1 DT DT DT 15 15 15 N 8 -3.80 0.60 122.30 118.50 A A A N3 C2 O2 DT DT DT 15 15 15 N 8 -4.05 0.60 122.90 118.85 A A A C6 C5 C7 DT DT DT 15 15 15 N 8 -4.22 0.70 121.90 117.68 A A A N3 C2 O2 DC DC DC 17 17 17 N 8 -3.76 0.60 122.30 118.54 A A A N3 C2 O2 DT DT DT 18 18 18 N 9 -3.23 0.50 117.00 113.77 A A A C4 C5 C6 DA DA DA 1 1 1 N 9 3.56 0.50 117.70 121.26 A A A C5 C6 N1 DA DA DA 1 1 1 N 9 -4.14 0.60 118.60 114.46 A A A N1 C6 N6 DA DA DA 1 1 1 N 9 2.78 0.30 108.30 111.08 A A A O4' C1' N9 DG DG DG 2 2 2 N 9 2.21 0.30 108.30 110.51 A A A O4' C1' N9 DG DG DG 3 3 3 N 9 -3.11 0.50 117.00 113.89 A A A C4 C5 C6 DA DA DA 4 4 4 N 9 3.58 0.50 117.70 121.28 A A A C5 C6 N1 DA DA DA 4 4 4 N 9 -4.07 0.60 118.60 114.53 A A A N1 C6 N6 DA DA DA 4 4 4 N 9 -3.72 0.60 122.30 118.58 A A A N3 C2 O2 DT DT DT 5 5 5 N 9 -4.22 0.70 121.90 117.68 A A A N3 C2 O2 DC DC DC 6 6 6 N 9 2.56 0.30 108.30 110.86 A A A O4' C1' N1 DC DC DC 7 7 7 N 9 -4.28 0.70 121.90 117.62 A A A N3 C2 O2 DC DC DC 7 7 7 N 9 -5.89 0.80 105.90 100.01 A A A O4' C1' C2' DT DT DT 8 8 8 N 9 8.13 0.30 108.30 116.43 A A A O4' C1' N1 DT DT DT 8 8 8 N 9 8.53 0.30 108.30 116.83 A A A O4' C1' N1 DU DU DU 9 9 9 N 9 4.65 0.30 108.30 112.95 A A A O4' C1' N1 DT DT DT 10 10 10 N 9 -5.17 0.60 122.30 117.13 A A A N3 C2 O2 DT DT DT 10 10 10 N 9 -4.31 0.60 122.90 118.59 A A A C6 C5 C7 DT DT DT 10 10 10 N 9 -4.00 0.60 122.30 118.30 A A A N3 C2 O2 DT DT DT 11 11 11 N 9 -3.91 0.60 122.90 118.99 A A A C6 C5 C7 DT DT DT 11 11 11 N 9 2.02 0.30 108.30 110.32 A A A O4' C1' N9 DG DG DG 13 13 13 N 9 -3.14 0.50 117.00 113.86 A A A C4 C5 C6 DA DA DA 14 14 14 N 9 3.56 0.50 117.70 121.26 A A A C5 C6 N1 DA DA DA 14 14 14 N 9 -3.98 0.60 118.60 114.62 A A A N1 C6 N6 DA DA DA 14 14 14 N 9 -3.80 0.60 122.30 118.50 A A A N3 C2 O2 DT DT DT 15 15 15 N 9 -3.73 0.60 122.30 118.57 A A A N3 C2 O2 DT DT DT 18 18 18 N 4 A A C5 C7 DT DT 10 10 0.037 0.006 1.496 1.533 N 8 A A C5 C7 DT DT 10 10 0.036 0.006 1.496 1.532 N SOLUTION STRUCTURE OF A URACIL CONTAINING HAIRPIN DNA 1 N N hydrog WATSON-CRICK A DA 1 A N1 DA 1 1_555 A DT 18 A N3 DT 18 1_555 hydrog WATSON-CRICK A DA 1 A N6 DA 1 1_555 A DT 18 A O4 DT 18 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 A DC 17 A N3 DC 17 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 A DC 17 A O2 DC 17 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 A DC 17 A N4 DC 17 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 A DC 16 A N3 DC 16 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 A DC 16 A O2 DC 16 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 A DC 16 A N4 DC 16 1_555 hydrog WATSON-CRICK A DA 4 A N1 DA 4 1_555 A DT 15 A N3 DT 15 1_555 hydrog WATSON-CRICK A DA 4 A N6 DA 4 1_555 A DT 15 A O4 DT 15 1_555 hydrog WATSON-CRICK A DT 5 A N3 DT 5 1_555 A DA 14 A N1 DA 14 1_555 hydrog WATSON-CRICK A DT 5 A O4 DT 5 1_555 A DA 14 A N6 DA 14 1_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 13 A N1 DG 13 1_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 13 A O6 DG 13 1_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 13 A N2 DG 13 1_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 A DG 12 A N1 DG 12 1_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 A DG 12 A O6 DG 12 1_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 A DG 12 A N2 DG 12 1_555 DNA Uracil, Hairpin DNA, Hairpin loop, Double helix, UDG-Uracil interaction, DNA 1DGO PDB 1 1DGO 1 18 1DGO 1 18 1DGO A 1 1 18 1 P 1