1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Hard, T.
Rak, A.
Allard, P.
Kloo, L.
Garber, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
296
169
180
10.1006/jmbi.1999.3433
10656825
The solution structure of ribosomal protein L36 from Thermus thermophilus reveals a zinc-ribbon-like fold.
2000
10.2210/pdb1dgz/pdb
pdb_00001dgz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4435.411
PROTEIN (L36 RIBOSOMAL PROTEIN)
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
MKVRASVKRICDKCKVIRRHGRVYVICENPKHKQRQG
MKVRASVKRICDKCKVIRRHGRVYVICENPKHKQRQG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Escherichia
sample
274
Thermus thermophilus
562
Escherichia coli
database_2
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1999-12-08
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
MINIMIZED AVERAGE STRUCTURE
RCSB
Y
RCSB
1999-11-27
REL
ZN
ZINC ION
STRUCTURES WITH ACCEPTABLE COVALENT GEOMETRY,STRUCTURES WITH FAVORABLE NON-
BOND ENERGY,STRUCTURES WITH THE LEAST RESTRAINT VIOLATIONS,STRUCTURES WITH THE
LOWEST ENERGY
50
38
7
ZN
38
2
ZN
ZN
38
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
VAL
3
n
3
VAL
3
A
ARG
4
n
4
ARG
4
A
ALA
5
n
5
ALA
5
A
SER
6
n
6
SER
6
A
VAL
7
n
7
VAL
7
A
LYS
8
n
8
LYS
8
A
ARG
9
n
9
ARG
9
A
ILE
10
n
10
ILE
10
A
CYS
11
n
11
CYS
11
A
ASP
12
n
12
ASP
12
A
LYS
13
n
13
LYS
13
A
CYS
14
n
14
CYS
14
A
LYS
15
n
15
LYS
15
A
VAL
16
n
16
VAL
16
A
ILE
17
n
17
ILE
17
A
ARG
18
n
18
ARG
18
A
ARG
19
n
19
ARG
19
A
HIS
20
n
20
HIS
20
A
GLY
21
n
21
GLY
21
A
ARG
22
n
22
ARG
22
A
VAL
23
n
23
VAL
23
A
TYR
24
n
24
TYR
24
A
VAL
25
n
25
VAL
25
A
ILE
26
n
26
ILE
26
A
CYS
27
n
27
CYS
27
A
GLU
28
n
28
GLU
28
A
ASN
29
n
29
ASN
29
A
PRO
30
n
30
PRO
30
A
LYS
31
n
31
LYS
31
A
HIS
32
n
32
HIS
32
A
LYS
33
n
33
LYS
33
A
GLN
34
n
34
GLN
34
A
ARG
35
n
35
ARG
35
A
GLN
36
n
36
GLN
36
A
GLY
37
n
37
GLY
37
A
author_defined_assembly
1
monomeric
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
38
B
ZN
ZN
1_555
A
CYS
14
A
SG
CYS
14
1_555
110.4
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
38
B
ZN
ZN
1_555
A
CYS
27
A
SG
CYS
27
1_555
109.5
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
38
B
ZN
ZN
1_555
A
CYS
27
A
SG
CYS
27
1_555
108.6
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
38
B
ZN
ZN
1_555
A
HIS
32
A
ND1
HIS
32
1_555
110.8
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
38
B
ZN
ZN
1_555
A
HIS
32
A
ND1
HIS
32
1_555
107.5
A
CYS
27
A
SG
CYS
27
1_555
A
ZN
38
B
ZN
ZN
1_555
A
HIS
32
A
ND1
HIS
32
1_555
110.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ILE
17
A
O
ILE
17
A
N
TYR
24
A
N
TYR
24
A
N
VAL
25
A
N
VAL
25
A
O
GLN
34
A
O
GLN
34
1
A
A
HZ3
OE1
LYS
GLU
13
28
1.53
2
A
A
HH11
O
ARG
GLN
35
36
1.57
36
A
A
HE
OH
ARG
TYR
19
24
1.59
1
A
ARG
4
-168.89
19.18
1
A
SER
6
-69.28
83.23
1
A
LYS
8
-38.57
136.17
1
A
HIS
20
-47.80
89.93
1
A
GLN
36
-62.17
97.90
2
A
LYS
8
-38.86
140.95
2
A
CYS
11
-121.06
-158.56
2
A
HIS
20
-48.33
88.17
3
A
VAL
3
-107.71
-65.59
3
A
ARG
4
-153.67
-42.23
3
A
SER
6
-143.65
56.51
3
A
CYS
11
-162.27
-160.76
3
A
HIS
20
1.52
-89.20
4
A
ARG
4
-139.41
-37.09
4
A
HIS
20
0.67
-81.61
5
A
ARG
4
-103.83
-97.91
5
A
ALA
5
-164.82
-67.59
5
A
LYS
8
-36.73
133.90
5
A
ARG
19
-150.57
-156.26
5
A
HIS
20
-19.36
76.86
6
A
ALA
5
-153.06
-92.37
6
A
CYS
11
-128.67
-150.50
6
A
ARG
19
-145.03
-154.74
6
A
HIS
20
-44.54
86.52
7
A
ARG
4
-95.07
-91.54
7
A
ALA
5
-163.68
54.58
7
A
SER
6
-147.34
53.02
7
A
LYS
8
-43.47
150.74
7
A
CYS
11
-150.36
-154.44
7
A
ARG
19
-134.03
-154.10
7
A
HIS
20
-46.63
82.17
8
A
VAL
3
-128.75
-91.51
8
A
ARG
4
-168.86
4.37
8
A
CYS
11
-105.09
-167.93
8
A
ARG
19
-142.94
-159.07
8
A
HIS
20
-41.24
85.46
9
A
ARG
4
-104.29
-80.71
9
A
ALA
5
-161.61
-56.21
9
A
CYS
11
-126.13
-158.96
9
A
HIS
20
1.06
-80.75
10
A
LYS
2
-164.55
109.83
10
A
CYS
11
-111.51
-168.15
10
A
HIS
20
0.75
-86.62
11
A
LYS
2
-83.82
34.71
11
A
ASP
12
-81.82
31.55
11
A
ARG
19
-129.57
-152.91
11
A
HIS
20
-45.49
85.42
12
A
VAL
3
-134.07
-80.14
12
A
SER
6
-156.86
48.45
12
A
LYS
8
-42.28
154.39
12
A
ARG
9
-47.47
156.80
12
A
CYS
11
-123.94
-162.42
12
A
ARG
19
-138.07
-152.63
12
A
HIS
20
-43.29
82.80
12
A
LYS
33
-69.06
81.69
13
A
LYS
2
-71.85
-135.65
13
A
VAL
3
-26.85
141.61
13
A
ARG
4
-36.13
117.08
13
A
SER
6
-84.11
34.50
13
A
LYS
8
-25.06
131.80
13
A
HIS
20
-46.61
84.85
13
A
GLN
36
-69.18
95.52
14
A
LYS
2
-84.19
40.95
14
A
LYS
8
-35.45
134.47
14
A
ASP
12
-67.84
29.69
14
A
HIS
20
0.83
-82.74
15
A
SER
6
-157.64
55.13
15
A
LYS
8
-35.79
138.71
15
A
ASP
12
-70.48
35.10
15
A
LYS
13
-140.86
-18.92
15
A
ARG
19
-122.12
-164.17
15
A
HIS
20
-47.67
86.41
16
A
ARG
4
-90.98
36.14
16
A
SER
6
-69.32
68.45
16
A
HIS
20
-45.23
88.25
17
A
ARG
4
-118.51
54.85
17
A
LYS
8
-35.48
138.47
17
A
ARG
19
-134.08
-159.01
17
A
HIS
20
-44.75
84.01
18
A
ARG
4
-165.22
-36.62
18
A
ARG
9
-49.18
152.43
18
A
CYS
11
-118.83
-154.97
18
A
ARG
19
-127.75
-156.30
18
A
HIS
20
-42.91
80.89
19
A
VAL
3
-61.83
95.02
19
A
ALA
5
-138.11
-45.14
19
A
CYS
11
-116.27
-149.99
19
A
ARG
19
-139.78
-159.07
19
A
HIS
20
-43.42
81.74
20
A
LYS
2
-73.39
-153.79
20
A
VAL
3
-45.11
152.90
20
A
SER
6
-160.86
57.79
20
A
ILE
10
-106.10
-65.11
20
A
ARG
19
-132.32
-155.39
20
A
HIS
20
-43.34
81.77
20
A
VAL
25
-150.69
86.04
21
A
ILE
10
-104.82
-65.32
21
A
CYS
11
-104.13
-167.36
21
A
ARG
19
-131.70
-155.12
21
A
HIS
20
-48.71
84.69
22
A
ARG
4
-94.39
-67.89
22
A
ALA
5
-167.41
-50.15
22
A
ASP
12
-70.62
34.92
22
A
LYS
13
-140.24
-17.64
22
A
ARG
19
-133.88
-151.43
22
A
HIS
20
-43.10
83.99
23
A
ARG
4
-135.80
-70.77
23
A
LYS
8
-24.70
131.89
23
A
ILE
10
-101.97
-70.12
23
A
ARG
19
-132.02
-155.49
23
A
HIS
20
-47.20
84.08
24
A
SER
6
-105.24
52.78
24
A
LYS
8
-39.64
132.21
24
A
ILE
10
-93.37
-79.28
24
A
CYS
11
-76.01
-168.70
24
A
ARG
19
-159.64
-159.86
24
A
HIS
20
-10.20
72.27
25
A
VAL
3
-132.51
-100.19
25
A
ARG
4
-166.32
-27.31
25
A
LYS
15
-160.89
112.68
25
A
HIS
20
-4.38
-80.55
26
A
ARG
4
-162.38
-16.80
26
A
ALA
5
-150.82
-147.74
26
A
LYS
8
-18.72
127.98
26
A
CYS
11
-96.53
-149.09
26
A
HIS
20
2.58
-104.10
26
A
VAL
25
-150.49
83.74
26
A
GLN
36
-36.64
135.86
27
A
LYS
2
-94.24
43.78
27
A
SER
6
-156.11
60.76
27
A
ILE
10
-106.20
-71.09
27
A
ASP
12
-75.82
30.30
27
A
ARG
19
-137.56
-156.85
27
A
HIS
20
-45.57
84.89
28
A
ALA
5
-176.98
16.97
28
A
SER
6
-169.99
86.83
28
A
CYS
14
-52.77
171.79
28
A
HIS
20
-45.05
87.99
28
A
GLN
36
-58.29
101.47
29
A
VAL
3
-122.20
-91.01
29
A
ARG
4
-173.89
87.65
29
A
SER
6
-163.95
54.31
29
A
CYS
11
-115.82
-154.06
29
A
HIS
20
0.60
-77.69
29
A
GLN
36
-48.73
98.09
30
A
VAL
3
-122.75
-71.88
30
A
ARG
4
-166.03
67.74
30
A
SER
6
-161.22
73.64
30
A
ILE
10
-85.76
-78.57
30
A
HIS
20
1.84
-83.15
31
A
ARG
4
-90.90
43.47
31
A
SER
6
-157.09
58.10
31
A
CYS
11
-115.84
-145.62
31
A
ARG
19
-165.58
-153.25
31
A
HIS
20
0.59
63.59
31
A
ARG
35
-164.04
113.13
31
A
GLN
36
-48.22
108.60
32
A
LYS
2
-140.04
53.77
32
A
VAL
3
-70.73
-100.04
32
A
ARG
4
-166.05
-24.69
32
A
ILE
10
-140.15
-53.88
32
A
ARG
19
-150.70
-152.94
32
A
HIS
20
-43.86
85.12
33
A
ARG
4
-61.27
89.51
33
A
ILE
10
-127.41
-83.15
33
A
ASP
12
-0.52
-78.66
33
A
ARG
19
-142.50
-153.24
33
A
HIS
20
-43.23
85.31
33
A
ARG
35
-160.55
88.26
33
A
GLN
36
-55.51
108.96
34
A
ARG
4
-69.35
72.91
34
A
SER
6
-169.05
44.45
34
A
ILE
10
-124.28
-72.24
34
A
ASP
12
179.14
-26.35
34
A
ARG
19
-124.79
-150.24
34
A
HIS
20
-43.74
83.00
35
A
SER
6
-101.58
75.59
35
A
LYS
8
-2.02
121.70
35
A
ARG
9
-42.02
156.91
35
A
ASP
12
-68.72
19.51
35
A
ARG
19
-131.66
-157.51
35
A
HIS
20
-45.46
83.36
36
A
ILE
10
-104.98
-61.13
36
A
CYS
11
-114.37
-167.59
36
A
ARG
19
-161.90
-161.67
36
A
HIS
20
-15.88
75.70
36
A
GLN
36
175.25
139.01
37
A
LYS
8
-36.94
137.47
37
A
ASP
12
-75.39
32.62
37
A
ARG
19
-163.67
-163.98
37
A
HIS
20
-1.77
66.26
38
A
VAL
3
-125.10
-66.67
38
A
ALA
5
-175.37
-85.01
38
A
ASP
12
-66.01
25.04
38
A
ARG
19
-119.42
-162.63
38
A
HIS
20
-46.99
85.75
RIBOSMAL PROTEIN L36 FROM THERMUS THERMOPHILUS: NMR STRUCTURE ENSEMBLE
1
N
N
2
N
N
A
ASN
29
A
ASN
29
HELX_P
A
LYS
33
A
LYS
33
5
1
5
metalc
2.299
A
CYS
11
A
SG
CYS
11
1_555
A
ZN
38
B
ZN
ZN
1_555
metalc
2.301
A
CYS
14
A
SG
CYS
14
1_555
A
ZN
38
B
ZN
ZN
1_555
metalc
2.292
A
CYS
27
A
SG
CYS
27
1_555
A
ZN
38
B
ZN
ZN
1_555
metalc
1.999
A
HIS
32
A
ND1
HIS
32
1_555
A
ZN
38
B
ZN
ZN
1_555
RIBOSOME
RIBOSOMAL PROTEIN, LARGE RIBOSOMAL SUBUNIT, ZINC BINDING, BETA SHEET, ribosome
RL36_THETH
UNP
1
P80256
1
37
1DGZ
1
37
P80256
A
1
1
37
3
anti-parallel
anti-parallel
A
LYS
15
A
LYS
15
A
ARG
18
A
ARG
18
A
VAL
23
A
VAL
23
A
ILE
26
A
ILE
26
A
GLN
34
A
GLN
34
A
ARG
35
A
ARG
35
BINDING SITE FOR RESIDUE ZN A 38
A
ZN
38
Software
4
A
CYS
11
A
CYS
11
4
1_555
A
CYS
14
A
CYS
14
4
1_555
A
CYS
27
A
CYS
27
4
1_555
A
HIS
32
A
HIS
32
4
1_555
1
P 1