HEADER DNA-RNA HYBRID 18-OCT-95 1DHH TITLE NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID TITLE 2 REGION, D(GG)R(AGAU)D(GAC)/D(GTCATCTCC) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA/RNA (5'-D(*GP*G)-R(P*AP*GP*AP*U)-D(P*GP*AP*C)-3'); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DHD; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL, COMPND 7 50MM NA PHOSPHATE, 3MM EDTA; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3'); COMPND 10 CHAIN: B; COMPND 11 SYNONYM: DHD; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL, COMPND 14 50MM NA PHOSPHATE, 3MM EDTA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: A SUBSTRATE OF RNASE H; SOURCE 4 MOL_ID: 2; SOURCE 5 SYNTHETIC: YES; SOURCE 6 OTHER_DETAILS: A SUBSTRATE OF RNASE H KEYWDS DNA/RNA HYBRID IN DNA DUPLEX, DNA-RNA HYBRID EXPDTA SOLUTION NMR AUTHOR T.NISHIZAKI,S.IWAI,T.OHKUBO,C.KOJIMA,H.NAKAMURA,Y.KYOGOKU,E.OHTSUKA REVDAT 4 16-FEB-22 1DHH 1 REMARK REVDAT 3 24-FEB-09 1DHH 1 VERSN REVDAT 2 01-APR-03 1DHH 1 JRNL REVDAT 1 03-APR-96 1DHH 0 JRNL AUTH T.NISHIZAKI,S.IWAI,T.OHKUBO,C.KOJIMA,H.NAKAMURA,Y.KYOGOKU, JRNL AUTH 2 E.OHTSUKA JRNL TITL SOLUTION STRUCUTRES OF DNA DUPLEXES CONTAINING A DNA X RNA JRNL TITL 2 HYBRID REGION, D(GG)R(AGAU)D(GAC) X D(GTCATCTCC) AND JRNL TITL 3 D(GGAGA)R(UGAC) X D(GTCATCTCC). JRNL REF BIOCHEMISTRY V. 35 4016 1996 JRNL REFN ISSN 0006-2960 JRNL PMID 8672435 JRNL DOI 10.1021/BI9519821 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RMSD BOND DISTANCES 0.0077 ANGSTROMS REMARK 3 RMSD BOND ANGLES 1.40 DEGREES NUMBER OF ATOMS USED IN REMARK 3 REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID REMARK 3 ATOMS 366 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 REMARK 3 THE STRUCTURES WAS REFINED BY A COMBINATION OF RESTRAINED REMARK 3 MOLECULAR DYNAMICS USING THE X-PLOR (V3.1F) PROGRAM (BRUNGER REMARK 3 1988) AND FULL RELAXATION MATRIX REFINEMENT OF THE TWO- REMARK 3 DIMENSIONAL NUCLEAR OVERHAUSER EFFECT SPECTRUM AT 150 MSEC. REMARK 4 REMARK 4 1DHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000172781. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : MOLECULAR DYNAMICS, MATRIX REMARK 210 RELAXATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG A 1 O4' - C1' - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 DG A 1 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 DG A 2 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG A 2 C8 - N9 - C4 ANGL. DEV. = -2.5 DEGREES REMARK 500 A A 3 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 G A 4 C3' - C2' - C1' ANGL. DEV. = 5.4 DEGREES REMARK 500 G A 4 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 A A 5 C3' - C2' - C1' ANGL. DEV. = 5.0 DEGREES REMARK 500 A A 5 N7 - C8 - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DG A 7 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG A 7 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DG A 7 C8 - N9 - C4 ANGL. DEV. = -2.4 DEGREES REMARK 500 DA A 8 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA A 8 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC A 9 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG B 10 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 DG B 10 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 DG B 10 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 DT B 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DC B 12 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA B 13 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DA B 13 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT B 14 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DC B 15 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT B 16 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC B 17 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC B 18 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 A A 3 0.05 SIDE CHAIN REMARK 500 U A 6 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DRN RELATED DB: PDB REMARK 900 MINIMIZED AVERAGE STRUCTURE DBREF 1DHH A 1 9 PDB 1DHH 1DHH 1 9 DBREF 1DHH B 10 18 PDB 1DHH 1DHH 10 18 SEQRES 1 A 9 DG DG A G A U DG DA DC SEQRES 1 B 9 DG DT DC DA DT DC DT DC DC CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ATOM 1 O5' DG A 1 2.817 -9.203 1.106 1.00 0.96 O ATOM 2 C5' DG A 1 4.154 -9.396 1.574 1.00 0.92 C ATOM 3 C4' DG A 1 4.683 -8.146 2.268 1.00 0.66 C ATOM 4 O4' DG A 1 4.592 -6.996 1.387 1.00 0.63 O ATOM 5 C3' DG A 1 3.867 -7.835 3.525 1.00 0.69 C ATOM 6 O3' DG A 1 4.726 -7.696 4.670 1.00 0.61 O ATOM 7 C2' DG A 1 3.169 -6.545 3.210 1.00 0.94 C ATOM 8 C1' DG A 1 4.034 -5.901 2.126 1.00 0.70 C ATOM 9 N9 DG A 1 3.246 -4.991 1.272 1.00 0.63 N ATOM 10 C8 DG A 1 2.043 -5.167 0.663 1.00 0.62 C ATOM 11 N7 DG A 1 1.561 -4.171 -0.005 1.00 0.58 N ATOM 12 C5 DG A 1 2.558 -3.202 0.172 1.00 0.55 C ATOM 13 C6 DG A 1 2.637 -1.867 -0.314 1.00 0.50 C ATOM 14 O6 DG A 1 1.827 -1.254 -1.006 1.00 0.48 O ATOM 15 N1 DG A 1 3.810 -1.246 0.097 1.00 0.51 N ATOM 16 C2 DG A 1 4.784 -1.830 0.879 1.00 0.58 C ATOM 17 N2 DG A 1 5.836 -1.079 1.177 1.00 0.63 N ATOM 18 N3 DG A 1 4.717 -3.075 1.337 1.00 0.62 N ATOM 19 C4 DG A 1 3.588 -3.702 0.950 1.00 0.59 C ATOM 20 P DG A 2 4.204 -7.021 6.042 1.00 0.59 P ATOM 21 OP1 DG A 2 4.962 -7.618 7.165 1.00 1.52 O ATOM 22 OP2 DG A 2 2.724 -7.062 6.051 1.00 1.33 O ATOM 23 O5' DG A 2 4.662 -5.480 5.888 1.00 0.50 O ATOM 24 C5' DG A 2 6.047 -5.128 5.971 1.00 0.40 C ATOM 25 C4' DG A 2 6.277 -3.620 5.885 1.00 0.41 C ATOM 26 O4' DG A 2 5.755 -3.074 4.649 1.00 0.38 O ATOM 27 C3' DG A 2 5.594 -2.882 7.026 1.00 0.42 C ATOM 28 O3' DG A 2 6.508 -2.572 8.094 1.00 0.57 O ATOM 29 C2' DG A 2 5.076 -1.596 6.395 1.00 0.39 C ATOM 30 C1' DG A 2 5.279 -1.734 4.892 1.00 0.38 C ATOM 31 N9 DG A 2 4.023 -1.447 4.188 1.00 0.34 N ATOM 32 C8 DG A 2 2.947 -2.227 3.979 1.00 0.36 C ATOM 33 N7 DG A 2 1.965 -1.728 3.303 1.00 0.33 N ATOM 34 C5 DG A 2 2.442 -0.443 3.027 1.00 0.29 C ATOM 35 C6 DG A 2 1.838 0.628 2.315 1.00 0.26 C ATOM 36 O6 DG A 2 0.749 0.653 1.749 1.00 0.26 O ATOM 37 N1 DG A 2 2.663 1.744 2.285 1.00 0.24 N ATOM 38 C2 DG A 2 3.914 1.822 2.865 1.00 0.26 C ATOM 39 N2 DG A 2 4.557 2.974 2.750 1.00 0.25 N ATOM 40 N3 DG A 2 4.484 0.825 3.526 1.00 0.29 N ATOM 41 C4 DG A 2 3.701 -0.269 3.572 1.00 0.30 C ATOM 42 P A A 3 5.985 -1.826 9.438 1.00 0.60 P ATOM 43 OP1 A A 3 6.887 -2.197 10.550 1.00 0.71 O ATOM 44 OP2 A A 3 4.530 -2.069 9.562 1.00 0.56 O ATOM 45 O5' A A 3 6.201 -0.252 9.112 1.00 0.57 O ATOM 46 C5' A A 3 7.519 0.319 9.052 1.00 0.61 C ATOM 47 C4' A A 3 7.503 1.821 8.723 1.00 0.54 C ATOM 48 O4' A A 3 6.738 2.074 7.529 1.00 0.49 O ATOM 49 C3' A A 3 6.903 2.654 9.853 1.00 0.54 C ATOM 50 O3' A A 3 7.930 3.369 10.564 1.00 0.60 O ATOM 51 C2' A A 3 5.937 3.608 9.193 1.00 0.48 C ATOM 52 O2' A A 3 6.430 4.953 9.236 1.00 0.49 O ATOM 53 C1' A A 3 5.787 3.135 7.754 1.00 0.43 C ATOM 54 N9 A A 3 4.420 2.646 7.491 1.00 0.41 N ATOM 55 C8 A A 3 3.863 1.449 7.802 1.00 0.44 C ATOM 56 N7 A A 3 2.702 1.183 7.308 1.00 0.42 N ATOM 57 C5 A A 3 2.432 2.348 6.584 1.00 0.35 C ATOM 58 C6 A A 3 1.343 2.743 5.802 1.00 0.30 C ATOM 59 N6 A A 3 0.300 1.953 5.560 1.00 0.31 N ATOM 60 N1 A A 3 1.394 3.963 5.240 1.00 0.25 N ATOM 61 C2 A A 3 2.455 4.749 5.429 1.00 0.27 C ATOM 62 N3 A A 3 3.544 4.473 6.142 1.00 0.31 N ATOM 63 C4 A A 3 3.467 3.247 6.698 1.00 0.35 C ATOM 64 P G A 4 7.657 4.019 12.020 1.00 0.66 P ATOM 65 OP1 G A 4 8.942 4.540 12.538 1.00 0.80 O ATOM 66 OP2 G A 4 6.880 3.050 12.825 1.00 0.76 O ATOM 67 O5' G A 4 6.696 5.280 11.689 1.00 0.50 O ATOM 68 C5' G A 4 7.227 6.613 11.579 1.00 0.45 C ATOM 69 C4' G A 4 6.116 7.667 11.498 1.00 0.36 C ATOM 70 O4' G A 4 5.169 7.312 10.473 1.00 0.32 O ATOM 71 C3' G A 4 5.354 7.790 12.818 1.00 0.35 C ATOM 72 O3' G A 4 5.568 9.073 13.437 1.00 0.34 O ATOM 73 C2' G A 4 3.904 7.589 12.478 1.00 0.35 C ATOM 74 O2' G A 4 3.106 8.718 12.831 1.00 0.37 O ATOM 75 C1' G A 4 3.829 7.371 10.997 1.00 0.32 C ATOM 76 N9 G A 4 3.083 6.145 10.711 1.00 0.32 N ATOM 77 C8 G A 4 3.317 4.897 11.143 1.00 0.35 C ATOM 78 N7 G A 4 2.548 3.954 10.701 1.00 0.34 N ATOM 79 C5 G A 4 1.673 4.674 9.874 1.00 0.30 C ATOM 80 C6 G A 4 0.572 4.230 9.086 1.00 0.28 C ATOM 81 O6 G A 4 0.146 3.086 8.941 1.00 0.29 O ATOM 82 N1 G A 4 -0.034 5.288 8.420 1.00 0.25 N ATOM 83 C2 G A 4 0.361 6.606 8.501 1.00 0.25 C ATOM 84 N2 G A 4 -0.359 7.485 7.815 1.00 0.24 N ATOM 85 N3 G A 4 1.391 7.027 9.230 1.00 0.27 N ATOM 86 C4 G A 4 1.998 6.019 9.885 1.00 0.29 C ATOM 87 P A A 5 5.052 9.373 14.945 1.00 0.35 P ATOM 88 OP1 A A 5 5.834 10.509 15.481 1.00 0.39 O ATOM 89 OP2 A A 5 5.012 8.092 15.685 1.00 0.38 O ATOM 90 O5' A A 5 3.525 9.872 14.717 1.00 0.32 O ATOM 91 C5' A A 5 3.249 11.231 14.334 1.00 0.33 C ATOM 92 C4' A A 5 1.783 11.470 13.927 1.00 0.32 C ATOM 93 O4' A A 5 1.410 10.721 12.744 1.00 0.35 O ATOM 94 C3' A A 5 0.800 11.060 15.011 1.00 0.26 C ATOM 95 O3' A A 5 0.489 12.129 15.922 1.00 0.22 O ATOM 96 C2' A A 5 -0.422 10.641 14.248 1.00 0.30 C ATOM 97 O2' A A 5 -1.375 11.696 14.166 1.00 0.32 O ATOM 98 C1' A A 5 0.042 10.250 12.890 1.00 0.33 C ATOM 99 N9 A A 5 -0.065 8.786 12.740 1.00 0.33 N ATOM 100 C8 A A 5 0.830 7.836 13.051 1.00 0.35 C ATOM 101 N7 A A 5 0.550 6.615 12.744 1.00 0.35 N ATOM 102 C5 A A 5 -0.711 6.760 12.161 1.00 0.34 C ATOM 103 C6 A A 5 -1.609 5.841 11.608 1.00 0.33 C ATOM 104 N6 A A 5 -1.346 4.539 11.506 1.00 0.34 N ATOM 105 N1 A A 5 -2.774 6.322 11.137 1.00 0.32 N ATOM 106 C2 A A 5 -3.039 7.631 11.204 1.00 0.31 C ATOM 107 N3 A A 5 -2.255 8.587 11.696 1.00 0.31 N ATOM 108 C4 A A 5 -1.098 8.080 12.162 1.00 0.33 C ATOM 109 P U A 6 -0.264 11.817 17.323 1.00 0.13 P ATOM 110 OP1 U A 6 -0.348 13.079 18.095 1.00 0.18 O ATOM 111 OP2 U A 6 0.378 10.629 17.928 1.00 0.13 O ATOM 112 O5' U A 6 -1.764 11.390 16.870 1.00 0.10 O ATOM 113 C5' U A 6 -2.695 12.358 16.361 1.00 0.13 C ATOM 114 C4' U A 6 -3.847 11.709 15.577 1.00 0.13 C ATOM 115 O4' U A 6 -3.367 10.708 14.660 1.00 0.14 O ATOM 116 C3' U A 6 -4.847 11.027 16.493 1.00 0.09 C ATOM 117 O3' U A 6 -5.961 11.891 16.768 1.00 0.12 O ATOM 118 C2' U A 6 -5.281 9.793 15.751 1.00 0.10 C ATOM 119 O2' U A 6 -6.539 9.984 15.109 1.00 0.14 O ATOM 120 C1' U A 6 -4.214 9.539 14.729 1.00 0.12 C ATOM 121 N1 U A 6 -3.425 8.338 15.052 1.00 0.13 N ATOM 122 C2 U A 6 -3.776 7.173 14.408 1.00 0.13 C ATOM 123 O2 U A 6 -4.812 7.074 13.759 1.00 0.13 O ATOM 124 N3 U A 6 -2.933 6.106 14.573 1.00 0.16 N ATOM 125 C4 U A 6 -1.777 6.085 15.328 1.00 0.19 C ATOM 126 O4 U A 6 -1.095 5.064 15.393 1.00 0.23 O ATOM 127 C5 U A 6 -1.481 7.338 15.990 1.00 0.17 C ATOM 128 C6 U A 6 -2.313 8.416 15.841 1.00 0.14 C ATOM 129 P DG A 7 -6.543 12.068 18.259 1.00 0.14 P ATOM 130 OP1 DG A 7 -6.685 13.516 18.524 1.00 1.26 O ATOM 131 OP2 DG A 7 -5.742 11.226 19.178 1.00 1.32 O ATOM 132 O5' DG A 7 -8.023 11.429 18.150 1.00 0.19 O ATOM 133 C5' DG A 7 -8.719 11.011 19.332 1.00 0.23 C ATOM 134 C4' DG A 7 -9.479 9.704 19.123 1.00 0.26 C ATOM 135 O4' DG A 7 -8.800 8.855 18.174 1.00 0.23 O ATOM 136 C3' DG A 7 -9.586 8.953 20.438 1.00 0.29 C ATOM 137 O3' DG A 7 -10.941 8.564 20.711 1.00 0.36 O ATOM 138 C2' DG A 7 -8.698 7.748 20.277 1.00 0.25 C ATOM 139 C1' DG A 7 -8.421 7.616 18.802 1.00 0.21 C ATOM 140 N9 DG A 7 -7.005 7.323 18.566 1.00 0.17 N ATOM 141 C8 DG A 7 -5.946 8.151 18.626 1.00 0.16 C ATOM 142 N7 DG A 7 -4.782 7.659 18.374 1.00 0.16 N ATOM 143 C5 DG A 7 -5.097 6.323 18.108 1.00 0.16 C ATOM 144 C6 DG A 7 -4.253 5.240 17.759 1.00 0.17 C ATOM 145 O6 DG A 7 -3.036 5.239 17.615 1.00 0.21 O ATOM 146 N1 DG A 7 -4.975 4.070 17.580 1.00 0.17 N ATOM 147 C2 DG A 7 -6.341 3.953 17.718 1.00 0.16 C ATOM 148 N2 DG A 7 -6.859 2.754 17.502 1.00 0.17 N ATOM 149 N3 DG A 7 -7.141 4.963 18.046 1.00 0.16 N ATOM 150 C4 DG A 7 -6.460 6.113 18.226 1.00 0.16 C ATOM 151 P DA A 8 -11.310 7.777 22.071 1.00 0.41 P ATOM 152 OP1 DA A 8 -12.772 7.552 22.092 1.00 1.22 O ATOM 153 OP2 DA A 8 -10.655 8.472 23.203 1.00 1.48 O ATOM 154 O5' DA A 8 -10.584 6.350 21.865 1.00 0.37 O ATOM 155 C5' DA A 8 -11.031 5.452 20.842 1.00 0.38 C ATOM 156 C4' DA A 8 -10.831 3.984 21.225 1.00 0.36 C ATOM 157 O4' DA A 8 -9.592 3.468 20.688 1.00 0.32 O ATOM 158 C3' DA A 8 -10.804 3.813 22.729 1.00 0.39 C ATOM 159 O3' DA A 8 -11.691 2.752 23.134 1.00 0.42 O ATOM 160 C2' DA A 8 -9.368 3.459 23.043 1.00 0.37 C ATOM 161 C1' DA A 8 -8.796 2.919 21.752 1.00 0.33 C ATOM 162 N9 DA A 8 -7.388 3.306 21.604 1.00 0.30 N ATOM 163 C8 DA A 8 -6.804 4.492 21.867 1.00 0.30 C ATOM 164 N7 DA A 8 -5.540 4.600 21.636 1.00 0.29 N ATOM 165 C5 DA A 8 -5.235 3.321 21.159 1.00 0.28 C ATOM 166 C6 DA A 8 -4.046 2.738 20.721 1.00 0.28 C ATOM 167 N6 DA A 8 -2.890 3.398 20.687 1.00 0.31 N ATOM 168 N1 DA A 8 -4.094 1.453 20.318 1.00 0.29 N ATOM 169 C2 DA A 8 -5.251 0.780 20.343 1.00 0.28 C ATOM 170 N3 DA A 8 -6.435 1.239 20.739 1.00 0.28 N ATOM 171 C4 DA A 8 -6.356 2.525 21.137 1.00 0.28 C ATOM 172 P DC A 9 -11.508 1.996 24.551 1.00 0.47 P ATOM 173 OP1 DC A 9 -12.674 1.112 24.757 1.00 1.39 O ATOM 174 OP2 DC A 9 -11.155 3.004 25.576 1.00 1.36 O ATOM 175 O5' DC A 9 -10.205 1.069 24.296 1.00 0.44 O ATOM 176 C5' DC A 9 -10.325 -0.214 23.669 1.00 0.44 C ATOM 177 C4' DC A 9 -9.036 -1.035 23.779 1.00 0.44 C ATOM 178 O4' DC A 9 -7.923 -0.399 23.124 1.00 0.38 O ATOM 179 C3' DC A 9 -8.635 -1.242 25.221 1.00 0.50 C ATOM 180 O3' DC A 9 -9.167 -2.466 25.736 1.00 0.56 O ATOM 181 C2' DC A 9 -7.112 -1.268 25.193 1.00 0.48 C ATOM 182 C1' DC A 9 -6.712 -0.799 23.797 1.00 0.41 C ATOM 183 N1 DC A 9 -5.749 0.314 23.876 1.00 0.40 N ATOM 184 C2 DC A 9 -4.434 0.064 23.520 1.00 0.40 C ATOM 185 O2 DC A 9 -4.090 -1.062 23.169 1.00 0.41 O ATOM 186 N3 DC A 9 -3.546 1.094 23.581 1.00 0.40 N ATOM 187 C4 DC A 9 -3.935 2.313 23.973 1.00 0.39 C ATOM 188 N4 DC A 9 -3.038 3.295 24.021 1.00 0.39 N ATOM 189 C5 DC A 9 -5.296 2.567 24.338 1.00 0.39 C ATOM 190 C6 DC A 9 -6.154 1.544 24.277 1.00 0.40 C TER 191 DC A 9 ATOM 192 O5' DG B 10 6.716 -0.065 21.185 1.00 0.77 O ATOM 193 C5' DG B 10 7.027 -1.441 21.412 1.00 0.80 C ATOM 194 C4' DG B 10 5.775 -2.310 21.378 1.00 0.76 C ATOM 195 O4' DG B 10 4.774 -1.804 22.292 1.00 0.69 O ATOM 196 C3' DG B 10 5.177 -2.335 19.982 1.00 0.77 C ATOM 197 O3' DG B 10 5.172 -3.675 19.464 1.00 0.84 O ATOM 198 C2' DG B 10 3.753 -1.821 20.150 1.00 0.68 C ATOM 199 C1' DG B 10 3.492 -1.781 21.641 1.00 0.66 C ATOM 200 N9 DG B 10 2.723 -0.582 22.018 1.00 0.61 N ATOM 201 C8 DG B 10 3.151 0.682 22.230 1.00 0.60 C ATOM 202 N7 DG B 10 2.277 1.559 22.590 1.00 0.56 N ATOM 203 C5 DG B 10 1.107 0.794 22.626 1.00 0.53 C ATOM 204 C6 DG B 10 -0.219 1.175 22.956 1.00 0.48 C ATOM 205 O6 DG B 10 -0.633 2.280 23.293 1.00 0.46 O ATOM 206 N1 DG B 10 -1.093 0.103 22.866 1.00 0.47 N ATOM 207 C2 DG B 10 -0.743 -1.179 22.504 1.00 0.49 C ATOM 208 N2 DG B 10 -1.728 -2.069 22.468 1.00 0.48 N ATOM 209 N3 DG B 10 0.499 -1.549 22.194 1.00 0.54 N ATOM 210 C4 DG B 10 1.373 -0.519 22.274 1.00 0.55 C ATOM 211 P DT B 11 4.443 -4.027 18.067 1.00 0.87 P ATOM 212 OP1 DT B 11 4.692 -5.454 17.763 1.00 1.53 O ATOM 213 OP2 DT B 11 4.806 -2.988 17.079 1.00 1.64 O ATOM 214 O5' DT B 11 2.880 -3.849 18.428 1.00 0.74 O ATOM 215 C5' DT B 11 2.041 -4.989 18.649 1.00 0.73 C ATOM 216 C4' DT B 11 0.583 -4.694 18.304 1.00 0.62 C ATOM 217 O4' DT B 11 0.027 -3.681 19.169 1.00 0.56 O ATOM 218 C3' DT B 11 0.456 -4.204 16.886 1.00 0.58 C ATOM 219 O3' DT B 11 0.019 -5.252 16.010 1.00 0.60 O ATOM 220 C2' DT B 11 -0.574 -3.097 16.949 1.00 0.48 C ATOM 221 C1' DT B 11 -0.873 -2.855 18.407 1.00 0.47 C ATOM 222 N1 DT B 11 -0.726 -1.427 18.753 1.00 0.43 N ATOM 223 C2 DT B 11 -1.851 -0.754 19.194 1.00 0.35 C ATOM 224 O2 DT B 11 -2.952 -1.293 19.276 1.00 0.31 O ATOM 225 N3 DT B 11 -1.669 0.571 19.531 1.00 0.34 N ATOM 226 C4 DT B 11 -0.480 1.274 19.470 1.00 0.40 C ATOM 227 O4 DT B 11 -0.436 2.454 19.806 1.00 0.40 O ATOM 228 C5 DT B 11 0.640 0.492 18.995 1.00 0.48 C ATOM 229 C7 DT B 11 2.017 1.140 18.884 1.00 0.56 C ATOM 230 C6 DT B 11 0.484 -0.804 18.656 1.00 0.49 C ATOM 231 P DC B 12 -0.478 -4.914 14.510 1.00 0.58 P ATOM 232 OP1 DC B 12 -0.735 -6.193 13.809 1.00 1.44 O ATOM 233 OP2 DC B 12 0.449 -3.921 13.923 1.00 1.38 O ATOM 234 O5' DC B 12 -1.895 -4.186 14.765 1.00 0.50 O ATOM 235 C5' DC B 12 -2.922 -4.839 15.519 1.00 0.47 C ATOM 236 C4' DC B 12 -4.185 -3.987 15.611 1.00 0.37 C ATOM 237 O4' DC B 12 -3.995 -2.871 16.492 1.00 0.34 O ATOM 238 C3' DC B 12 -4.594 -3.452 14.253 1.00 0.34 C ATOM 239 O3' DC B 12 -5.802 -4.090 13.799 1.00 0.32 O ATOM 240 C2' DC B 12 -4.775 -1.980 14.461 1.00 0.28 C ATOM 241 C1' DC B 12 -4.668 -1.737 15.940 1.00 0.26 C ATOM 242 N1 DC B 12 -3.911 -0.510 16.191 1.00 0.26 N ATOM 243 C2 DC B 12 -4.576 0.582 16.703 1.00 0.21 C ATOM 244 O2 DC B 12 -5.781 0.521 16.923 1.00 0.19 O ATOM 245 N3 DC B 12 -3.858 1.713 16.938 1.00 0.22 N ATOM 246 C4 DC B 12 -2.545 1.756 16.682 1.00 0.27 C ATOM 247 N4 DC B 12 -1.878 2.885 16.909 1.00 0.28 N ATOM 248 C5 DC B 12 -1.866 0.612 16.152 1.00 0.33 C ATOM 249 C6 DC B 12 -2.592 -0.481 15.923 1.00 0.32 C ATOM 250 P DA B 13 -6.698 -3.474 12.606 1.00 0.43 P ATOM 251 OP1 DA B 13 -7.706 -4.484 12.216 1.00 0.45 O ATOM 252 OP2 DA B 13 -5.791 -2.904 11.585 1.00 0.76 O ATOM 253 O5' DA B 13 -7.457 -2.260 13.343 1.00 0.42 O ATOM 254 C5' DA B 13 -8.851 -2.008 13.120 1.00 0.32 C ATOM 255 C4' DA B 13 -9.061 -0.843 12.161 1.00 0.28 C ATOM 256 O4' DA B 13 -8.243 0.283 12.541 1.00 0.29 O ATOM 257 C3' DA B 13 -8.699 -1.245 10.752 1.00 0.25 C ATOM 258 O3' DA B 13 -9.752 -0.876 9.845 1.00 0.29 O ATOM 259 C2' DA B 13 -7.422 -0.501 10.454 1.00 0.23 C ATOM 260 C1' DA B 13 -7.356 0.629 11.463 1.00 0.25 C ATOM 261 N9 DA B 13 -5.980 0.814 11.962 1.00 0.25 N ATOM 262 C8 DA B 13 -4.999 -0.103 12.140 1.00 0.27 C ATOM 263 N7 DA B 13 -3.899 0.297 12.686 1.00 0.29 N ATOM 264 C5 DA B 13 -4.171 1.653 12.900 1.00 0.27 C ATOM 265 C6 DA B 13 -3.422 2.694 13.461 1.00 0.28 C ATOM 266 N6 DA B 13 -2.191 2.535 13.942 1.00 0.31 N ATOM 267 N1 DA B 13 -3.994 3.908 13.515 1.00 0.27 N ATOM 268 C2 DA B 13 -5.230 4.094 13.046 1.00 0.27 C ATOM 269 N3 DA B 13 -6.027 3.182 12.499 1.00 0.26 N ATOM 270 C4 DA B 13 -5.433 1.974 12.457 1.00 0.25 C ATOM 271 P DT B 14 -9.513 -0.796 8.251 1.00 0.32 P ATOM 272 OP1 DT B 14 -10.801 -1.073 7.578 1.00 0.32 O ATOM 273 OP2 DT B 14 -8.318 -1.602 7.914 1.00 0.38 O ATOM 274 O5' DT B 14 -9.151 0.760 8.033 1.00 0.33 O ATOM 275 C5' DT B 14 -10.166 1.766 8.146 1.00 0.31 C ATOM 276 C4' DT B 14 -9.606 3.169 7.914 1.00 0.33 C ATOM 277 O4' DT B 14 -8.621 3.508 8.909 1.00 0.36 O ATOM 278 C3' DT B 14 -8.961 3.273 6.556 1.00 0.34 C ATOM 279 O3' DT B 14 -9.828 3.948 5.633 1.00 0.35 O ATOM 280 C2' DT B 14 -7.692 4.075 6.794 1.00 0.33 C ATOM 281 C1' DT B 14 -7.553 4.246 8.292 1.00 0.34 C ATOM 282 N1 DT B 14 -6.245 3.766 8.771 1.00 0.32 N ATOM 283 C2 DT B 14 -5.413 4.672 9.403 1.00 0.32 C ATOM 284 O2 DT B 14 -5.715 5.852 9.548 1.00 0.32 O ATOM 285 N3 DT B 14 -4.214 4.170 9.864 1.00 0.31 N ATOM 286 C4 DT B 14 -3.783 2.862 9.752 1.00 0.31 C ATOM 287 O4 DT B 14 -2.695 2.522 10.206 1.00 0.30 O ATOM 288 C5 DT B 14 -4.719 1.990 9.076 1.00 0.31 C ATOM 289 C7 DT B 14 -4.381 0.514 8.891 1.00 0.32 C ATOM 290 C6 DT B 14 -5.892 2.462 8.615 1.00 0.32 C ATOM 291 P DC B 15 -9.478 4.000 4.061 1.00 0.31 P ATOM 292 OP1 DC B 15 -10.655 4.533 3.340 1.00 0.34 O ATOM 293 OP2 DC B 15 -8.902 2.693 3.670 1.00 0.32 O ATOM 294 O5' DC B 15 -8.307 5.103 4.002 1.00 0.28 O ATOM 295 C5' DC B 15 -8.480 6.389 4.612 1.00 0.30 C ATOM 296 C4' DC B 15 -7.137 7.081 4.822 1.00 0.28 C ATOM 297 O4' DC B 15 -6.323 6.366 5.758 1.00 0.26 O ATOM 298 C3' DC B 15 -6.378 7.175 3.534 1.00 0.25 C ATOM 299 O3' DC B 15 -6.499 8.486 2.973 1.00 0.31 O ATOM 300 C2' DC B 15 -4.938 6.863 3.923 1.00 0.23 C ATOM 301 C1' DC B 15 -4.959 6.610 5.418 1.00 0.24 C ATOM 302 N1 DC B 15 -4.108 5.461 5.780 1.00 0.20 N ATOM 303 C2 DC B 15 -2.971 5.710 6.525 1.00 0.21 C ATOM 304 O2 DC B 15 -2.622 6.864 6.749 1.00 0.23 O ATOM 305 N3 DC B 15 -2.244 4.650 6.966 1.00 0.20 N ATOM 306 C4 DC B 15 -2.617 3.398 6.681 1.00 0.20 C ATOM 307 N4 DC B 15 -1.906 2.383 7.161 1.00 0.22 N ATOM 308 C5 DC B 15 -3.782 3.141 5.896 1.00 0.20 C ATOM 309 C6 DC B 15 -4.488 4.192 5.468 1.00 0.19 C ATOM 310 P DT B 16 -6.409 8.711 1.381 1.00 0.33 P ATOM 311 OP1 DT B 16 -7.146 9.949 1.043 1.00 0.43 O ATOM 312 OP2 DT B 16 -6.750 7.439 0.704 1.00 0.31 O ATOM 313 O5' DT B 16 -4.841 8.987 1.173 1.00 0.30 O ATOM 314 C5' DT B 16 -4.211 10.092 1.828 1.00 0.32 C ATOM 315 C4' DT B 16 -2.715 9.857 2.000 1.00 0.29 C ATOM 316 O4' DT B 16 -2.455 8.761 2.894 1.00 0.24 O ATOM 317 C3' DT B 16 -2.067 9.532 0.678 1.00 0.30 C ATOM 318 O3' DT B 16 -1.390 10.678 0.147 1.00 0.34 O ATOM 319 C2' DT B 16 -1.109 8.411 0.973 1.00 0.24 C ATOM 320 C1' DT B 16 -1.277 8.074 2.446 1.00 0.20 C ATOM 321 N1 DT B 16 -1.400 6.616 2.668 1.00 0.16 N ATOM 322 C2 DT B 16 -0.423 6.010 3.435 1.00 0.15 C ATOM 323 O2 DT B 16 0.578 6.611 3.816 1.00 0.18 O ATOM 324 N3 DT B 16 -0.619 4.679 3.727 1.00 0.15 N ATOM 325 C4 DT B 16 -1.685 3.902 3.324 1.00 0.17 C ATOM 326 O4 DT B 16 -1.770 2.728 3.675 1.00 0.20 O ATOM 327 C5 DT B 16 -2.652 4.608 2.512 1.00 0.18 C ATOM 328 C7 DT B 16 -3.877 3.858 1.987 1.00 0.23 C ATOM 329 C6 DT B 16 -2.485 5.915 2.212 1.00 0.18 C ATOM 330 P DC B 17 -0.735 10.645 -1.325 1.00 0.41 P ATOM 331 OP1 DC B 17 -0.432 12.038 -1.725 1.00 1.25 O ATOM 332 OP2 DC B 17 -1.577 9.795 -2.195 1.00 1.46 O ATOM 333 O5' DC B 17 0.658 9.879 -1.071 1.00 0.38 O ATOM 334 C5' DC B 17 1.678 10.480 -0.267 1.00 0.37 C ATOM 335 C4' DC B 17 2.699 9.449 0.196 1.00 0.33 C ATOM 336 O4' DC B 17 2.052 8.302 0.757 1.00 0.28 O ATOM 337 C3' DC B 17 3.553 8.973 -0.956 1.00 0.38 C ATOM 338 O3' DC B 17 4.840 9.601 -0.908 1.00 0.43 O ATOM 339 C2' DC B 17 3.654 7.482 -0.771 1.00 0.36 C ATOM 340 C1' DC B 17 2.837 7.148 0.448 1.00 0.28 C ATOM 341 N1 DC B 17 1.980 5.971 0.232 1.00 0.27 N ATOM 342 C2 DC B 17 2.291 4.818 0.922 1.00 0.25 C ATOM 343 O2 DC B 17 3.332 4.753 1.559 1.00 0.25 O ATOM 344 N3 DC B 17 1.430 3.770 0.854 1.00 0.25 N ATOM 345 C4 DC B 17 0.307 3.852 0.135 1.00 0.28 C ATOM 346 N4 DC B 17 -0.525 2.813 0.116 1.00 0.31 N ATOM 347 C5 DC B 17 -0.012 5.045 -0.593 1.00 0.30 C ATOM 348 C6 DC B 17 0.861 6.068 -0.520 1.00 0.29 C ATOM 349 P DC B 18 6.046 9.120 -1.859 1.00 0.52 P ATOM 350 OP1 DC B 18 7.221 9.973 -1.572 1.00 1.29 O ATOM 351 OP2 DC B 18 5.533 9.008 -3.243 1.00 1.50 O ATOM 352 O5' DC B 18 6.348 7.634 -1.308 1.00 0.49 O ATOM 353 C5' DC B 18 7.016 7.435 -0.056 1.00 0.55 C ATOM 354 C4' DC B 18 7.462 5.985 0.108 1.00 0.63 C ATOM 355 O4' DC B 18 6.339 5.094 0.334 1.00 0.56 O ATOM 356 C3' DC B 18 8.180 5.513 -1.146 1.00 0.71 C ATOM 357 O3' DC B 18 9.519 5.117 -0.837 1.00 0.83 O ATOM 358 C2' DC B 18 7.369 4.321 -1.636 1.00 0.69 C ATOM 359 C1' DC B 18 6.536 3.904 -0.453 1.00 0.61 C ATOM 360 N1 DC B 18 5.258 3.283 -0.876 1.00 0.52 N ATOM 361 C2 DC B 18 4.999 1.990 -0.441 1.00 0.53 C ATOM 362 O2 DC B 18 5.813 1.401 0.266 1.00 0.60 O ATOM 363 N3 DC B 18 3.834 1.400 -0.823 1.00 0.49 N ATOM 364 C4 DC B 18 2.956 2.046 -1.597 1.00 0.47 C ATOM 365 N4 DC B 18 1.829 1.431 -1.953 1.00 0.49 N ATOM 366 C5 DC B 18 3.216 3.381 -2.046 1.00 0.46 C ATOM 367 C6 DC B 18 4.374 3.954 -1.667 1.00 0.48 C TER 368 DC B 18 MASTER 139 0 0 0 0 0 0 6 366 2 0 2 END