0.017724 0.000000 0.000000 0.000000 0.016210 0.000000 0.000000 0.000000 0.030432 0.00000 0.00000 0.00000 Takano, K. Yamagata, Y. Yutani, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90 90 90 56.42 61.69 32.86 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 39 8655 8665 10.1021/bi9928694 10913274 Role of amino acid residues at turns in the conformational stability and folding of human lysozyme. 2000 US Biochemistry BICHAW 0033 0006-2960 38 12698 12708 10.1021/bi9910169 Contribution of Intra-and Intermolecular Hydrogen Bonds to the Conformational Stability of Human Lysozyme 1999 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 DIFFRACTOMETER 1998-10-25 WEISSENBERG SINGLE WAVELENGTH M x-ray 1 1.0 1.0 BL-6A Photon Factory 1.0 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 14563.500 LYSOZYME C 3.2.1.17 DEL 101 1 man polymer 22.990 SODIUM ION 1 syn non-polymer 18.015 water 187 nat water no no KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS CSALLQDNIADAVACAKRVVDPQGIRAWVAWRNRCQNRDVRQYVQGCGV KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS CSALLQDNIADAVACAKRVVDPQGIRAWVAWRNRCQNRDVRQYVQGCGV A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo baker's yeast Saccharomyces sample 9606 Homo sapiens 4932 Saccharomyces cerevisiae PGEL125 1 1.96 37.34 VAPOR DIFFUSION, HANGING DROP 4.5 SODIUM PHOSPHATE, SODIUM CHLORIDE, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 283K 283 repository Initial release Version format compliance Version format compliance 1 0 1999-12-08 1 1 2008-04-27 1 2 2011-07-13 1CJ6 CONTAINS OTHER MUTANT HUMAN LYSOZYME HUMAN LYSOZYME, R50G MUTATION HUMAN LYSOZYME, RESIDUES 47-48 DELETED RCSB Y RCSB 1999-11-29 REL NA SODIUM ION HOH water NA 601 2 NA NA 601 A TIP 131 3 HOH HOH 131 A TIP 132 3 HOH HOH 132 A TIP 133 3 HOH HOH 133 A TIP 134 3 HOH HOH 134 A TIP 135 3 HOH HOH 135 A TIP 136 3 HOH HOH 136 A TIP 137 3 HOH HOH 137 A TIP 138 3 HOH HOH 138 A TIP 139 3 HOH HOH 139 A TIP 140 3 HOH HOH 140 A TIP 141 3 HOH HOH 141 A TIP 142 3 HOH HOH 142 A TIP 143 3 HOH HOH 143 A TIP 144 3 HOH HOH 144 A TIP 145 3 HOH HOH 145 A TIP 146 3 HOH HOH 146 A TIP 147 3 HOH HOH 147 A TIP 148 3 HOH HOH 148 A TIP 149 3 HOH HOH 149 A TIP 150 3 HOH HOH 150 A TIP 151 3 HOH HOH 151 A TIP 152 3 HOH HOH 152 A TIP 153 3 HOH HOH 153 A TIP 154 3 HOH HOH 154 A TIP 155 3 HOH HOH 155 A TIP 156 3 HOH HOH 156 A TIP 157 3 HOH HOH 157 A TIP 158 3 HOH HOH 158 A TIP 159 3 HOH HOH 159 A TIP 160 3 HOH HOH 160 A TIP 161 3 HOH HOH 161 A TIP 162 3 HOH HOH 162 A TIP 163 3 HOH HOH 163 A TIP 164 3 HOH HOH 164 A TIP 165 3 HOH HOH 165 A TIP 166 3 HOH HOH 166 A TIP 167 3 HOH HOH 167 A TIP 168 3 HOH HOH 168 A TIP 170 3 HOH HOH 170 A TIP 171 3 HOH HOH 171 A TIP 172 3 HOH HOH 172 A TIP 173 3 HOH HOH 173 A TIP 174 3 HOH HOH 174 A TIP 175 3 HOH HOH 175 A TIP 176 3 HOH HOH 176 A TIP 177 3 HOH HOH 177 A TIP 178 3 HOH HOH 178 A TIP 179 3 HOH HOH 179 A TIP 180 3 HOH HOH 180 A TIP 181 3 HOH HOH 181 A TIP 182 3 HOH HOH 182 A TIP 183 3 HOH HOH 183 A TIP 184 3 HOH HOH 184 A TIP 185 3 HOH HOH 185 A TIP 186 3 HOH HOH 186 A TIP 187 3 HOH HOH 187 A TIP 188 3 HOH HOH 188 A TIP 189 3 HOH HOH 189 A TIP 190 3 HOH HOH 190 A TIP 191 3 HOH HOH 191 A TIP 192 3 HOH HOH 192 A TIP 193 3 HOH HOH 193 A TIP 194 3 HOH HOH 194 A TIP 195 3 HOH HOH 195 A TIP 196 3 HOH HOH 196 A TIP 197 3 HOH HOH 197 A TIP 198 3 HOH HOH 198 A TIP 199 3 HOH HOH 199 A TIP 200 3 HOH HOH 200 A TIP 201 3 HOH HOH 201 A TIP 202 3 HOH HOH 202 A TIP 203 3 HOH HOH 203 A TIP 204 3 HOH HOH 204 A TIP 205 3 HOH HOH 205 A TIP 206 3 HOH HOH 206 A TIP 207 3 HOH HOH 207 A TIP 208 3 HOH HOH 208 A TIP 209 3 HOH HOH 209 A TIP 210 3 HOH HOH 210 A TIP 211 3 HOH HOH 211 A TIP 212 3 HOH HOH 212 A TIP 213 3 HOH HOH 213 A TIP 214 3 HOH HOH 214 A TIP 215 3 HOH HOH 215 A TIP 216 3 HOH HOH 216 A TIP 217 3 HOH HOH 217 A TIP 218 3 HOH HOH 218 A TIP 219 3 HOH HOH 219 A TIP 220 3 HOH HOH 220 A TIP 221 3 HOH HOH 221 A TIP 222 3 HOH HOH 222 A TIP 223 3 HOH HOH 223 A TIP 224 3 HOH HOH 224 A TIP 225 3 HOH HOH 225 A TIP 226 3 HOH HOH 226 A TIP 227 3 HOH HOH 227 A TIP 228 3 HOH HOH 228 A TIP 229 3 HOH HOH 229 A TIP 230 3 HOH HOH 230 A TIP 231 3 HOH HOH 231 A TIP 232 3 HOH HOH 232 A TIP 233 3 HOH HOH 233 A TIP 234 3 HOH HOH 234 A TIP 235 3 HOH HOH 235 A TIP 236 3 HOH HOH 236 A TIP 237 3 HOH HOH 237 A TIP 238 3 HOH HOH 238 A TIP 239 3 HOH HOH 239 A TIP 240 3 HOH HOH 240 A TIP 241 3 HOH HOH 241 A TIP 242 3 HOH HOH 242 A TIP 243 3 HOH HOH 243 A TIP 244 3 HOH HOH 244 A TIP 245 3 HOH HOH 245 A TIP 247 3 HOH HOH 247 A TIP 248 3 HOH HOH 248 A TIP 249 3 HOH HOH 249 A TIP 250 3 HOH HOH 250 A TIP 251 3 HOH HOH 251 A TIP 252 3 HOH HOH 252 A TIP 253 3 HOH HOH 253 A TIP 254 3 HOH HOH 254 A TIP 255 3 HOH HOH 255 A TIP 256 3 HOH HOH 256 A TIP 257 3 HOH HOH 257 A TIP 258 3 HOH HOH 258 A TIP 259 3 HOH HOH 259 A TIP 260 3 HOH HOH 260 A TIP 261 3 HOH HOH 261 A TIP 262 3 HOH HOH 262 A TIP 263 3 HOH HOH 263 A TIP 264 3 HOH HOH 264 A TIP 265 3 HOH HOH 265 A TIP 266 3 HOH HOH 266 A TIP 267 3 HOH HOH 267 A TIP 268 3 HOH HOH 268 A TIP 269 3 HOH HOH 269 A TIP 270 3 HOH HOH 270 A TIP 271 3 HOH HOH 271 A TIP 272 3 HOH HOH 272 A TIP 273 3 HOH HOH 273 A TIP 274 3 HOH HOH 274 A TIP 275 3 HOH HOH 275 A TIP 276 3 HOH HOH 276 A TIP 277 3 HOH HOH 277 A TIP 278 3 HOH HOH 278 A TIP 279 3 HOH HOH 279 A TIP 280 3 HOH HOH 280 A TIP 281 3 HOH HOH 281 A TIP 282 3 HOH HOH 282 A TIP 283 3 HOH HOH 283 A TIP 284 3 HOH HOH 284 A TIP 285 3 HOH HOH 285 A TIP 286 3 HOH HOH 286 A TIP 287 3 HOH HOH 287 A TIP 288 3 HOH HOH 288 A TIP 289 3 HOH HOH 289 A TIP 290 3 HOH HOH 290 A TIP 291 3 HOH HOH 291 A TIP 292 3 HOH HOH 292 A TIP 293 3 HOH HOH 293 A TIP 294 3 HOH HOH 294 A TIP 295 3 HOH HOH 295 A TIP 296 3 HOH HOH 296 A TIP 297 3 HOH HOH 297 A TIP 298 3 HOH HOH 298 A TIP 299 3 HOH HOH 299 A TIP 300 3 HOH HOH 300 A TIP 301 3 HOH HOH 301 A TIP 302 3 HOH HOH 302 A TIP 303 3 HOH HOH 303 A TIP 304 3 HOH HOH 304 A TIP 305 3 HOH HOH 305 A TIP 306 3 HOH HOH 306 A TIP 307 3 HOH HOH 307 A TIP 308 3 HOH HOH 308 A TIP 309 3 HOH HOH 309 A TIP 310 3 HOH HOH 310 A TIP 311 3 HOH HOH 311 A TIP 312 3 HOH HOH 312 A TIP 313 3 HOH HOH 313 A TIP 314 3 HOH HOH 314 A TIP 315 3 HOH HOH 315 A TIP 316 3 HOH HOH 316 A TIP 317 3 HOH HOH 317 A TIP 318 3 HOH HOH 318 A TIP 319 3 HOH HOH 319 A LYS 1 n 1 LYS 1 A VAL 2 n 2 VAL 2 A PHE 3 n 3 PHE 3 A GLU 4 n 4 GLU 4 A ARG 5 n 5 ARG 5 A CYS 6 n 6 CYS 6 A GLU 7 n 7 GLU 7 A LEU 8 n 8 LEU 8 A ALA 9 n 9 ALA 9 A ARG 10 n 10 ARG 10 A THR 11 n 11 THR 11 A LEU 12 n 12 LEU 12 A LYS 13 n 13 LYS 13 A ARG 14 n 14 ARG 14 A LEU 15 n 15 LEU 15 A GLY 16 n 16 GLY 16 A MET 17 n 17 MET 17 A ASP 18 n 18 ASP 18 A GLY 19 n 19 GLY 19 A TYR 20 n 20 TYR 20 A ARG 21 n 21 ARG 21 A GLY 22 n 22 GLY 22 A ILE 23 n 23 ILE 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A ALA 26 n 26 ALA 26 A ASN 27 n 27 ASN 27 A TRP 28 n 28 TRP 28 A MET 29 n 29 MET 29 A CYS 30 n 30 CYS 30 A LEU 31 n 31 LEU 31 A ALA 32 n 32 ALA 32 A LYS 33 n 33 LYS 33 A TRP 34 n 34 TRP 34 A GLU 35 n 35 GLU 35 A SER 36 n 36 SER 36 A GLY 37 n 37 GLY 37 A TYR 38 n 38 TYR 38 A ASN 39 n 39 ASN 39 A THR 40 n 40 THR 40 A ARG 41 n 41 ARG 41 A ALA 42 n 42 ALA 42 A THR 43 n 43 THR 43 A ASN 44 n 44 ASN 44 A TYR 45 n 45 TYR 45 A ASN 46 n 46 ASN 46 A ALA 47 n 47 ALA 47 A GLY 48 n 48 GLY 48 A ASP 49 n 49 ASP 49 A ARG 50 n 50 ARG 50 A SER 51 n 51 SER 51 A THR 52 n 52 THR 52 A ASP 53 n 53 ASP 53 A TYR 54 n 54 TYR 54 A GLY 55 n 55 GLY 55 A ILE 56 n 56 ILE 56 A PHE 57 n 57 PHE 57 A GLN 58 n 58 GLN 58 A ILE 59 n 59 ILE 59 A ASN 60 n 60 ASN 60 A SER 61 n 61 SER 61 A ARG 62 n 62 ARG 62 A TYR 63 n 63 TYR 63 A TRP 64 n 64 TRP 64 A CYS 65 n 65 CYS 65 A ASN 66 n 66 ASN 66 A ASP 67 n 67 ASP 67 A GLY 68 n 68 GLY 68 A LYS 69 n 69 LYS 69 A THR 70 n 70 THR 70 A PRO 71 n 71 PRO 71 A GLY 72 n 72 GLY 72 A ALA 73 n 73 ALA 73 A VAL 74 n 74 VAL 74 A ASN 75 n 75 ASN 75 A ALA 76 n 76 ALA 76 A CYS 77 n 77 CYS 77 A HIS 78 n 78 HIS 78 A LEU 79 n 79 LEU 79 A SER 80 n 80 SER 80 A CYS 81 n 81 CYS 81 A SER 82 n 82 SER 82 A ALA 83 n 83 ALA 83 A LEU 84 n 84 LEU 84 A LEU 85 n 85 LEU 85 A GLN 86 n 86 GLN 86 A ASP 87 n 87 ASP 87 A ASN 88 n 88 ASN 88 A ILE 89 n 89 ILE 89 A ALA 90 n 90 ALA 90 A ASP 91 n 91 ASP 91 A ALA 92 n 92 ALA 92 A VAL 93 n 93 VAL 93 A ALA 94 n 94 ALA 94 A CYS 95 n 95 CYS 95 A ALA 96 n 96 ALA 96 A LYS 97 n 97 LYS 97 A ARG 98 n 98 ARG 98 A VAL 99 n 99 VAL 99 A VAL 100 n 100 VAL 100 A ASP 102 n 101 ASP 102 A PRO 103 n 102 PRO 103 A GLN 104 n 103 GLN 104 A GLY 105 n 104 GLY 105 A ILE 106 n 105 ILE 106 A ARG 107 n 106 ARG 107 A ALA 108 n 107 ALA 108 A TRP 109 n 108 TRP 109 A VAL 110 n 109 VAL 110 A ALA 111 n 110 ALA 111 A TRP 112 n 111 TRP 112 A ARG 113 n 112 ARG 113 A ASN 114 n 113 ASN 114 A ARG 115 n 114 ARG 115 A CYS 116 n 115 CYS 116 A GLN 117 n 116 GLN 117 A ASN 118 n 117 ASN 118 A ARG 119 n 118 ARG 119 A ASP 120 n 119 ASP 120 A VAL 121 n 120 VAL 121 A ARG 122 n 121 ARG 122 A GLN 123 n 122 GLN 123 A TYR 124 n 123 TYR 124 A VAL 125 n 124 VAL 125 A GLN 126 n 125 GLN 126 A GLY 127 n 126 GLY 127 A CYS 128 n 127 CYS 128 A GLY 129 n 128 GLY 129 A VAL 130 n 129 VAL 130 A author_defined_assembly 1 monomeric A SER 61 A O SER 61 1_555 A NA 601 B NA NA 1_555 A HOH 260 C O HOH 1_555 89.1 A SER 61 A O SER 61 1_555 A NA 601 B NA NA 1_555 A CYS 65 A O CYS 65 1_555 86.6 A HOH 260 C O HOH 1_555 A NA 601 B NA NA 1_555 A CYS 65 A O CYS 65 1_555 85.4 A SER 61 A O SER 61 1_555 A NA 601 B NA NA 1_555 A VAL 74 A O VAL 74 1_555 104.8 A HOH 260 C O HOH 1_555 A NA 601 B NA NA 1_555 A VAL 74 A O VAL 74 1_555 162.0 A CYS 65 A O CYS 65 1_555 A NA 601 B NA NA 1_555 A VAL 74 A O VAL 74 1_555 106.5 A SER 61 A O SER 61 1_555 A NA 601 B NA NA 1_555 A HOH 255 C O HOH 1_555 158.2 A HOH 260 C O HOH 1_555 A NA 601 B NA NA 1_555 A HOH 255 C O HOH 1_555 72.5 A CYS 65 A O CYS 65 1_555 A NA 601 B NA NA 1_555 A HOH 255 C O HOH 1_555 103.1 A VAL 74 A O VAL 74 1_555 A NA 601 B NA NA 1_555 A HOH 255 C O HOH 1_555 91.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASN 46 A N ASN 46 A O SER 51 A O SER 51 A N TYR 54 A N TYR 54 A O ILE 59 A O ILE 59 1 A GLN 104 -148.83 41.91 1 A ARG 107 -67.74 0.56 0.165 0.165 2.2 8.0 5530 91.5 1 3 2.2 8.0 187 1206 1 0 1018 2.2 40.0 1DI5 27719 5952 0.042 1 97.3 0.088 2.2 2.24 84.3 data reduction DENZO model building X-PLOR refinement X-PLOR 3.1 phasing X-PLOR LYSOZYME C (E.C.3.2.1.17) ROLE OF AMINO ACID RESIDUES AT TURNS IN THE CONFORMATIONAL STABILITY AND FOLDING OF HUMAN LYSOZYME 1 N N 2 N N 3 N N A GLU 4 A GLU 4 HELX_P A LEU 15 A LEU 15 1 1 12 A SER 24 A SER 24 HELX_P A GLY 37 A GLY 37 1 2 14 A CYS 81 A CYS 81 HELX_P A GLN 86 A GLN 86 5 3 6 A ILE 89 A ILE 89 HELX_P A ASP 102 A ASP 101 1 4 13 A GLY 105 A GLY 104 HELX_P A ALA 108 A ALA 107 5 5 4 A TRP 109 A TRP 108 HELX_P A CYS 116 A CYS 115 1 6 8 A VAL 121 A VAL 120 HELX_P A GLN 126 A GLN 125 5 7 6 disulf 2.040 A CYS 6 A SG CYS 6 1_555 A CYS 128 A SG CYS 127 1_555 disulf 2.032 A CYS 30 A SG CYS 30 1_555 A CYS 116 A SG CYS 115 1_555 disulf 2.044 A CYS 65 A SG CYS 65 1_555 A CYS 81 A SG CYS 81 1_555 disulf 2.028 A CYS 77 A SG CYS 77 1_555 A CYS 95 A SG CYS 95 1_555 metalc 2.145 A NA 601 B NA NA 1_555 A SER 61 A O SER 61 1_555 metalc 2.322 A NA 601 B NA NA 1_555 A HOH 260 C O HOH 1_555 metalc 2.311 A NA 601 B NA NA 1_555 A CYS 65 A O CYS 65 1_555 metalc 2.306 A NA 601 B NA NA 1_555 A VAL 74 A O VAL 74 1_555 metalc 2.366 A NA 601 B NA NA 1_555 A HOH 255 C O HOH 1_555 HYDROLASE STABILITY, TURN, MUTANT, HYDROLASE LYSC_HUMAN UNP 1 P61626 19 148 1DI5 1 130 P61626 A 1 1 129 1 ARG DELETION 1DI5 A P61626 UNP 119 3 anti-parallel anti-parallel A THR 43 A THR 43 A ASN 46 A ASN 46 A SER 51 A SER 51 A TYR 54 A TYR 54 A ILE 59 A ILE 59 A ASN 60 A ASN 60 BINDING SITE FOR RESIDUE NA A 601 Software 6 A SER 61 A SER 61 6 1_555 A CYS 65 A CYS 65 6 1_555 A ALA 73 A ALA 73 6 1_555 A VAL 74 A VAL 74 6 1_555 A HOH 255 C HOH 6 1_555 A HOH 260 C HOH 6 1_555 19 P 21 21 21