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3.185
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2.176
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3.023
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2.112
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2.185
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3.812
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3.402
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5.218
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3.114
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3.227
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3.898
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2.696
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1.702
-5.114
2.363
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2.724
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1.793
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0.663
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-0.456
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3.149
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-1.446
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3.278
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3.660
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0.451
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3.483
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1.678
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2.343
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3.829
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3.069
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5.894
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5.275
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1.922
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4.999
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0.955
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2.671
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3.223
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6.616
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2.332
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6.245
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-2.751
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0.924
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10.458
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8.499
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8.200
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8.451
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5.763
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6.249
0.472
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8.002
1.429
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8.199
2.830
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6.772
1.143
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5.649
1.084
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4.507
0.241
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3.252
0.818
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3.028
1.986
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2.225
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2.309
-1.313
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1.285
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8.397
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3.648
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3.896
-3.308
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4.684
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8.153
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7.944
1.321
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8.913
1.034
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6.914
0.178
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3
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6.568
1.889
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5.332
2.099
6.630
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3
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1.305
0.411
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2.968
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3
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4.640
-3.350
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3
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4.260
-3.860
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3
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5.684
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8.580
3.895
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4
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9.366
4.988
7.330
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9.137
3.155
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7.137
4.483
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6.530
5.598
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4
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5.258
6.092
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4
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4.199
5.116
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4
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4.745
7.657
10.162
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4
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5.019
5.202
10.508
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4
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3.775
4.934
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4
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3.275
3.579
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4
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0.32
3.975
2.433
10.154
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0.29
3.276
1.349
10.332
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1.968
1.845
10.268
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0.24
0.727
1.178
10.427
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0.25
0.513
-0.016
10.615
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-0.337
2.060
10.336
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0.23
-0.227
3.411
10.120
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4
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0.24
-1.331
4.128
10.054
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4
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0.922
4.042
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4
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1.972
3.202
10.054
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4
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6.273
5.311
6.672
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4
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7.246
6.421
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4.874
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4
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6.524
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10.113
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5.776
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10.282
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4
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4.841
5.206
11.578
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4
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4
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3.096
5.728
10.034
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5.066
2.474
10.148
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4
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-1.262
1.664
10.441
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10.160
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5.121
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4.496
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11.637
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4.767
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11.594
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12.631
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13.220
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13.579
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13.755
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6.530
12.848
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5.170
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13.033
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3.506
13.190
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0.635
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13.276
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1.707
13.429
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13.539
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1.580
13.452
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13.332
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13.183
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13.164
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10.086
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13.523
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1.744
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13.571
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14.801
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13.134
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12.926
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13.615
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13.542
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13.359
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15.091
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15.146
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14.709
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15.244
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16.759
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17.071
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17.274
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16.226
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4.437
16.284
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16.162
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16.260
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16.472
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16.656
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1.054
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16.653
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13.631
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14.908
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17.308
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18.252
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15.995
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18.563
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18.812
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2.807
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2.188
18.520
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20.289
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1.681
20.592
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2.419
20.824
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1.607
19.736
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1.719
19.773
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0.584
19.903
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19.999
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0.792
19.919
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-1.665
1.999
19.823
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2.023
19.858
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3.141
19.690
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4.568
19.566
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2.952
19.671
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4.187
17.144
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4.607
18.374
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2.206
18.287
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3.638
20.698
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3.337
21.082
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1.868
21.738
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0.599
19.880
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20.009
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5.209
20.359
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5.008
18.617
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4.558
19.601
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3.759
19.573
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1.122
22.086
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0.391
22.083
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2.208
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0.045
22.232
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21.703
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-2.264
22.382
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-2.060
22.064
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23.898
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-3.481
24.380
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-5.925
-1.859
24.362
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-4.964
-2.211
23.251
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-3.939
-1.172
23.110
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-4.143
0.164
23.025
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-3.081
0.902
22.899
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-2.065
-0.060
22.899
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-0.671
0.038
22.823
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C
0.26
-0.043
1.199
22.693
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0.044
-1.097
22.880
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-0.589
-2.262
23.004
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-1.892
-2.485
23.086
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-2.580
-1.323
23.026
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-7.892
-1.285
20.632
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-9.110
-1.647
21.872
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-7.371
-3.270
22.065
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-1.374
24.241
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-5.945
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24.554
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1.988
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25.100
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1.453
26.756
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2.115
24.381
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25.783
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25.805
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3.114
25.392
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22.142
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11.063
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22.197
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10.032
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22.024
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2
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22.563
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2
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22.259
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2
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5.879
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22.840
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2
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20.752
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2
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20.456
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2
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20.573
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2
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4.989
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21.782
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2
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4.365
-2.571
21.911
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2
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0.35
3.063
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22.357
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2
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0.39
2.374
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22.682
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2
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2.550
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22.423
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2
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3.195
-0.040
22.093
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2
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0.31
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22.200
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2
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0.36
4.551
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21.640
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2
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0.42
5.444
0.904
21.212
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2
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0.38
5.071
-1.462
21.569
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2
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8.439
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23.646
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2
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22.152
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2
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22.698
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2
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20.101
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2
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6.676
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20.600
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2
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19.666
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2
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4.253
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21.604
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2
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1.595
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22.745
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2
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1.13
4.906
1.844
21.273
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2
2
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0.702
20.189
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2
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1.19
6.320
0.913
21.856
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2
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-1.561
21.224
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2
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5.658
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18.983
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3
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6.413
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18.986
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3
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5.970
-5.994
17.981
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3
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18.860
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3
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3.398
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19.626
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3
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1.890
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19.601
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3
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1.585
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20.193
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3
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O
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1.330
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18.176
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3
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0.074
-8.760
18.053
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3
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O
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1.312
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17.912
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3
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0.35
0.884
-6.056
19.223
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2
3
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0.32
1.271
-4.645
19.333
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12
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N9
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2
3
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0.34
2.484
-4.060
19.143
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12
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C8
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2
3
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0.33
2.525
-2.768
19.310
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12
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N7
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2
3
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0.30
1.197
-2.476
19.645
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12
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2
3
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C
0.29
0.495
-1.270
19.809
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12
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2
3
1.00
1
C
0.31
1.084
-0.078
19.826
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12
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N6
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2
3
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0.27
-0.841
-1.343
19.961
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N1
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12
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N1
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2
3
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1
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0.26
-1.437
-2.538
19.950
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C2
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12
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2
3
1.00
1
C
0.28
-0.889
-3.724
19.807
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N3
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12
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N3
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2
3
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1
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0.29
0.442
-3.619
19.657
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12
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2
3
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C
0.48
3.739
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20.662
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12
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2
3
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0.51
3.599
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19.195
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12
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3
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20.163
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-8.473
17.447
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3
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-6.304
17.742
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-6.353
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-6.239
19.284
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3
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3.349
-4.669
18.861
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3
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0.525
0.763
19.940
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3
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2.084
-0.002
19.723
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3
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-2.517
-2.610
20.063
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3
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-0.790
-8.808
16.691
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4
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-10.168
16.535
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4
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-8.202
15.592
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17.051
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18.090
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4
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-7.015
18.217
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4
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18.554
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4
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-6.818
16.914
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4
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-6.621
17.119
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4
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-5.676
16.319
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4
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17.487
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4
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17.182
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4
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17.155
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4
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-3.689
-2.126
17.379
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4
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16.877
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4
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16.633
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4
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0.695
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16.364
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4
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-3.852
16.657
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4
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-4.598
16.937
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4
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-8.176
19.045
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4
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17.875
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4
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16.196
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4
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-6.175
15.851
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4
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4
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4
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16.404
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4
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1.597
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16.125
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4
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0.817
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16.459
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4
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-5.689
16.980
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4
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-6.594
15.888
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5
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-6.782
16.443
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5
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-7.491
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5
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15.382
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5
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16.205
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5
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-2.636
15.560
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5
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-1.982
15.578
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5
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-2.652
14.121
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5
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-1.604
13.863
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5
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-2.519
13.392
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5
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-1.543
14.258
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5
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-1.602
14.107
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5
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0.30
-3.998
-0.410
14.003
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5
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-4.525
0.696
14.021
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5
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0.32
-2.642
-0.511
13.857
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5
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0.33
-1.910
-1.664
13.800
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5
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0.36
-0.689
-1.602
13.665
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14
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5
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-2.701
-2.870
13.912
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5
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0.35
-1.991
-4.213
13.813
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5
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-4.045
-2.810
14.065
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5
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-3.887
17.016
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5
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-4.301
16.558
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5
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-2.027
16.141
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5
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-3.623
13.894
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5
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-3.501
13.401
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5
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-2.191
12.367
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5
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-0.563
14.078
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5
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-2.126
0.354
13.785
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5
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1.05
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-4.049
13.771
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5
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1.09
-2.312
-4.704
12.895
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2
5
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1.10
-2.236
-4.836
14.664
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2
5
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-4.660
-3.718
14.189
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5
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0.41
-9.790
-1.212
12.400
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6
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1.46
-11.202
-0.805
12.573
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6
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1.27
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-2.293
11.443
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6
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0.35
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0.092
12.003
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6
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1.389
12.611
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6
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2.441
11.959
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2
6
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C
0.32
-6.800
2.088
12.127
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6
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O
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2.637
10.464
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6
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C
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4.046
10.149
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6
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O
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-7.293
1.856
9.909
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6
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C
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-6.165
2.209
10.858
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15
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DC
2
6
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C
0.28
-4.976
1.327
10.834
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15
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N1
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2
6
1.00
1
N
0.28
-3.713
1.849
10.624
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15
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C2
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2
6
1.00
1
C
0.30
-3.539
3.049
10.435
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15
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O2
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2
6
1.00
1
O
0.27
-2.652
0.995
10.634
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15
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N3
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2
6
1.00
1
N
0.26
-2.825
-0.315
10.844
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15
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B
C4
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2
6
1.00
1
C
0.27
-1.751
-1.102
10.846
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15
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N4
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2
6
1.00
1
N
0.27
-4.130
-0.865
11.064
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15
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B
C5
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2
6
1.00
1
C
0.28
-5.160
0.008
11.044
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15
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2
6
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1
C
0.40
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1.323
13.668
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15
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2
6
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0.39
-10.133
1.707
12.517
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15
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2
6
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0.39
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3.435
12.392
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15
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2
6
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0.37
-9.425
2.225
10.181
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15
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2
6
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H
0.31
-7.521
0.796
9.960
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15
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2
6
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0.32
-7.092
2.105
8.883
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15
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2
6
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H
0.32
-5.939
3.247
10.726
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15
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H1'
DC
2
6
1.00
1
H
0.27
-0.828
-0.691
10.692
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H41
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15
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B
H41
DC
2
6
1.00
1
H
0.28
-1.838
-2.096
10.998
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H42
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15
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B
H42
DC
2
6
1.00
1
H
0.29
-4.286
-1.931
11.259
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15
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B
H5
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2
6
1.00
1
H
0.29
-6.199
-0.254
11.184
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15
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B
H6
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2
6
1.00
1
H
0.47
-8.498
4.694
8.662
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P
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16
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B
P
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2
7
1.00
1
P
1.44
-9.318
5.925
8.738
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16
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B
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2
7
1.00
1
O
1.31
-8.866
3.629
7.700
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16
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B
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2
7
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O
0.44
-6.957
5.110
8.364
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16
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B
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DA
2
7
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O
0.47
-6.326
6.267
8.944
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16
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B
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DA
2
7
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1
C
0.46
-4.932
6.589
8.364
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16
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B
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DA
2
7
1.00
1
C
0.40
-3.955
5.553
8.591
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16
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B
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DA
2
7
1.00
1
O
0.48
-4.896
6.879
6.861
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16
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B
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DA
2
7
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1
C
0.57
-4.092
8.044
6.611
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16
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B
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DA
2
7
1.00
1
O
0.41
-4.365
5.589
6.323
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16
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B
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DA
2
7
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1
C
0.36
-3.346
5.169
7.343
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16
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B
C1'
DA
2
7
1.00
1
C
0.29
-3.148
3.707
7.394
B
N9
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16
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B
N9
DA
2
7
1.00
1
N
0.31
-4.097
2.746
7.519
B
C8
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16
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B
C8
DA
2
7
1.00
1
C
0.28
-3.689
1.515
7.576
B
N7
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16
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B
N7
DA
2
7
1.00
1
N
0.24
-2.307
1.676
7.477
B
C5
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16
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B
C5
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2
7
1.00
1
C
0.25
-1.254
0.755
7.435
B
C6
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16
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B
C6
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2
7
1.00
1
C
0.31
-1.428
-0.558
7.545
B
N6
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16
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B
N6
DA
2
7
1.00
1
N
0.24
-0.013
1.238
7.286
B
N1
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16
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B
N1
DA
2
7
1.00
1
N
0.22
0.172
2.555
7.185
B
C2
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16
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B
C2
DA
2
7
1.00
1
C
0.23
-0.736
3.519
7.213
B
N3
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16
ATOM
B
N3
DA
2
7
1.00
1
N
0.24
-1.972
3.003
7.363
B
C4
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16
ATOM
B
C4
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2
7
1.00
1
C
0.49
-6.211
6.099
10.016
B
H5'
DA
16
ATOM
B
H5'
DA
2
7
1.00
1
H
0.52
-6.969
7.136
8.795
B
H5''
DA
16
ATOM
B
H5''
DA
2
7
1.00
1
H
0.52
-4.570
7.488
8.862
B
H4'
DA
16
ATOM
B
H4'
DA
2
7
1.00
1
H
0.51
-5.878
7.009
6.438
B
H3'
DA
16
ATOM
B
H3'
DA
2
7
1.00
1
H
0.40
-5.196
4.898
6.308
B
H2'
DA
16
ATOM
B
H2'
DA
2
7
1.00
1
H
0.42
-3.966
5.653
5.321
B
H2''
DA
16
ATOM
B
H2''
DA
2
7
1.00
1
H
0.39
-2.462
5.746
7.093
B
H1'
DA
16
ATOM
B
H1'
DA
2
7
1.00
1
H
0.36
-5.140
3.032
7.556
B
H8
DA
16
ATOM
B
H8
DA
2
7
1.00
1
H
0.71
-0.626
-1.173
7.498
B
H61
DA
16
ATOM
B
H61
DA
2
7
1.00
1
H
0.72
-2.357
-0.932
7.676
B
H62
DA
16
ATOM
B
H62
DA
2
7
1.00
1
H
0.24
1.206
2.886
7.055
B
H2
DA
16
ATOM
B
H2
DA
2
7
1.00
1
H
0.66
-3.731
8.634
5.152
B
P
DT
17
ATOM
B
P
DT
2
8
1.00
1
P
1.56
-3.498
10.089
5.294
B
OP1
DT
17
ATOM
B
OP1
DT
2
8
1.00
1
O
1.39
-4.721
8.136
4.169
B
OP2
DT
17
ATOM
B
OP2
DT
2
8
1.00
1
O
0.59
-2.319
7.914
4.851
B
O5'
DT
17
ATOM
B
O5'
DT
2
8
1.00
1
O
0.59
-1.094
8.333
5.477
B
C5'
DT
17
ATOM
B
C5'
DT
2
8
1.00
1
C
0.51
0.124
7.560
4.961
B
C4'
DT
17
ATOM
B
C4'
DT
2
8
1.00
1
C
0.44
0.058
6.157
5.290
B
O4'
DT
17
ATOM
B
O4'
DT
2
8
1.00
1
O
0.50
0.301
7.678
3.441
B
C3'
DT
17
ATOM
B
C3'
DT
2
8
1.00
1
C
0.62
1.597
8.216
3.129
B
O3'
DT
17
ATOM
B
O3'
DT
2
8
1.00
1
O
0.39
0.073
6.241
3.001
B
C2'
DT
17
ATOM
B
C2'
DT
2
8
1.00
1
C
0.37
0.509
5.384
4.170
B
C1'
DT
17
ATOM
B
C1'
DT
2
8
1.00
1
C
0.32
-0.169
4.066
4.196
B
N1
DT
17
ATOM
B
N1
DT
2
8
1.00
1
N
0.30
0.605
2.919
4.251
B
C2
DT
17
ATOM
B
C2
DT
2
8
1.00
1
C
0.33
1.831
2.912
4.271
B
O2
DT
17
ATOM
B
O2
DT
2
8
1.00
1
O
0.30
-0.081
1.735
4.285
B
N3
DT
17
ATOM
B
N3
DT
2
8
1.00
1
N
0.29
-1.440
1.567
4.267
B
C4
DT
17
ATOM
B
C4
DT
2
8
1.00
1
C
0.31
-1.901
0.428
4.309
B
O4
DT
17
ATOM
B
O4
DT
2
8
1.00
1
O
0.30
-2.184
2.809
4.205
B
C5
DT
17
ATOM
B
C5
DT
2
8
1.00
1
C
0.34
-3.717
2.794
4.167
B
C7
DT
17
ATOM
B
C7
DT
2
8
1.00
1
C
0.32
-1.535
3.991
4.174
B
C6
DT
17
ATOM
B
C6
DT
2
8
1.00
1
C
0.60
-1.164
8.182
6.555
B
H5'
DT
17
ATOM
B
H5'
DT
2
8
1.00
1
H
0.67
-0.939
9.394
5.280
B
H5''
DT
17
ATOM
B
H5''
DT
2
8
1.00
1
H
0.53
1.023
7.975
5.417
B
H4'
DT
17
ATOM
B
H4'
DT
2
8
1.00
1
H
0.56
-0.467
8.328
3.017
B
H3'
DT
17
ATOM
B
H3'
DT
2
8
1.00
1
H
0.40
-0.988
6.105
2.805
B
H2'
DT
17
ATOM
B
H2'
DT
2
8
1.00
1
H
0.39
0.619
5.947
2.121
B
H2''
DT
17
ATOM
B
H2''
DT
2
8
1.00
1
H
0.42
1.591
5.258
4.127
B
H1'
DT
17
ATOM
B
H1'
DT
2
8
1.00
1
H
0.32
0.479
0.897
4.333
B
H3
DT
17
ATOM
B
H3
DT
2
8
1.00
1
H
1.01
-4.063
3.252
3.239
B
H71
DT
17
ATOM
B
H71
DT
2
8
1.00
1
H
1.08
-4.117
3.366
5.000
B
H72
DT
17
ATOM
B
H72
DT
2
8
1.00
1
H
1.09
-4.091
1.773
4.230
B
H73
DT
17
ATOM
B
H73
DT
2
8
1.00
1
H
0.38
-2.097
4.925
4.138
B
H6
DT
17
ATOM
B
H6
DT
2
8
1.00
1
H
0.61
2.131
8.509
1.632
B
P
DG
18
ATOM
B
P
DG
2
9
1.00
1
P
1.41
3.357
9.333
1.737
B
OP1
DG
18
ATOM
B
OP1
DG
2
9
1.00
1
O
1.52
1.001
8.963
0.788
B
OP2
DG
18
ATOM
B
OP2
DG
2
9
1.00
1
O
0.53
2.553
7.018
1.168
B
O5'
DG
18
ATOM
B
O5'
DG
2
9
1.00
1
O
0.86
3.781
6.406
1.600
B
C5'
DG
18
ATOM
B
C5'
DG
2
9
1.00
1
C
0.97
3.878
4.933
1.201
B
C4'
DG
18
ATOM
B
C4'
DG
2
9
1.00
1
C
0.84
2.901
4.073
1.811
B
O4'
DG
18
ATOM
B
O4'
DG
2
9
1.00
1
O
1.00
3.646
4.719
-0.290
B
C3'
DG
18
ATOM
B
C3'
DG
2
9
1.00
1
C
1.43
4.765
5.019
-1.132
B
O3'
DG
18
ATOM
B
O3'
DG
2
9
1.00
1
O
0.98
3.163
3.284
-0.350
B
C2'
DG
18
ATOM
B
C2'
DG
2
9
1.00
1
C
0.87
3.033
2.831
1.096
B
C1'
DG
18
ATOM
B
C1'
DG
2
9
1.00
1
C
0.59
1.823
2.009
1.247
B
N9
DG
18
ATOM
B
N9
DG
2
9
1.00
1
N
0.44
0.527
2.410
1.247
B
C8
DG
18
ATOM
B
C8
DG
2
9
1.00
1
C
0.36
-0.364
1.473
1.395
B
N7
DG
18
ATOM
B
N7
DG
2
9
1.00
1
N
0.35
0.430
0.327
1.504
B
C5
DG
18
ATOM
B
C5
DG
2
9
1.00
1
C
0.41
0.062
-1.036
1.690
B
C6
DG
18
ATOM
B
C6
DG
2
9
1.00
1
C
0.57
-1.053
-1.541
1.802
B
O6
DG
18
ATOM
B
O6
DG
2
9
1.00
1
O
0.43
1.169
-1.856
1.752
B
N1
DG
18
ATOM
B
N1
DG
2
9
1.00
1
N
0.53
2.472
-1.442
1.651
B
C2
DG
18
ATOM
B
C2
DG
2
9
1.00
1
C
0.64
3.423
-2.354
1.738
B
N2
DG
18
ATOM
B
N2
DG
2
9
1.00
1
N
0.63
2.831
-0.177
1.478
B
N3
DG
18
ATOM
B
N3
DG
2
9
1.00
1
N
0.50
1.763
0.651
1.414
B
C4
DG
18
ATOM
B
C4
DG
2
9
1.00
1
C
1.27
3.880
6.479
2.684
B
H5'
DG
18
ATOM
B
H5'
DG
2
9
1.00
1
H
1.11
4.607
6.945
1.135
B
H5''
DG
18
ATOM
B
H5''
DG
2
9
1.00
1
H
1.31
4.892
4.608
1.444
B
H4'
DG
18
ATOM
B
H4'
DG
2
9
1.00
1
H
0.85
2.775
5.313
-0.570
B
H3'
DG
18
ATOM
B
H3'
DG
2
9
1.00
1
H
1.56
4.887
5.972
-1.111
B
HO3'
DG
18
ATOM
B
HO3'
DG
2
9
1.00
1
H
0.90
2.145
3.348
-0.740
B
H2'
DG
18
ATOM
B
H2'
DG
2
9
1.00
1
H
1.16
3.760
2.609
-0.962
B
H2''
DG
18
ATOM
B
H2''
DG
2
9
1.00
1
H
1.15
3.914
2.266
1.403
B
H1'
DG
18
ATOM
B
H1'
DG
2
9
1.00
1
H
0.50
0.292
3.471
1.130
B
H8
DG
18
ATOM
B
H8
DG
2
9
1.00
1
H
0.50
0.972
-2.838
1.885
B
H1
DG
18
ATOM
B
H1
DG
2
9
1.00
1
H
0.59
3.198
-3.346
1.799
B
H21
DG
18
ATOM
B
H21
DG
2
9
1.00
1
H
0.83
4.382
-2.043
1.740
B
H22
DG
18
ATOM
B
H22
DG
2
9
1.00
1
H
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Klewer, D.A.
Hoskins, A.
Davisson, V.J.
Bergstrom, D.E.
LiWang, A.C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
28
4514
4522
10.1093/nar/28.22.4514
11071940
NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control.
2000
10.2210/pdb1dk9/pdb
pdb_00001dk9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2739.824
5'-D(CP*AP*TP*GP*AP*GP*TP*AP*CP*)-3'
1
syn
polymer
2730.810
5'-D(GP*TP*AP*CP*TP*CP*AP*TP*GP*)-3'
1
syn
polymer
no
no
(DC)(DA)(DT)(DG)(DA)(DG)(DT)(DA)(DC)
CATGAGTAC
A
polydeoxyribonucleotide
no
no
(DG)(DT)(DA)(DC)(DT)(DC)(DA)(DT)(DG)
GTACTCATG
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
11.032
1
19
A
1
B
18
0.988
A_DC1:DG18_B
1
-20.539
0.299
0.156
-0.468
3.758
1
20
A
2
B
17
4.559
A_DA2:DT17_B
2
-9.696
0.108
0.360
-0.357
1.353
1
20
A
3
B
16
10.682
A_DT3:DA16_B
3
-12.621
0.124
0.573
-0.326
3.994
1
19
A
4
B
15
-0.372
A_DG4:DC15_B
4
-1.764
-0.157
0.084
-0.485
-1.271
1
20
A
5
B
14
3.075
A_DA5:DT14_B
5
-7.882
0.296
-0.111
-0.370
-5.926
1
19
A
6
B
13
2.040
A_DG6:DC13_B
6
-10.084
-0.273
0.136
-0.508
-15.253
1
20
A
7
B
12
-1.035
A_DT7:DA12_B
7
-0.937
-0.083
0.069
-0.359
-15.567
1
20
A
8
B
11
1.908
A_DA8:DT11_B
8
-3.001
0.043
-0.264
-0.377
-11.700
1
19
A
9
B
10
-0.778
A_DC9:DG10_B
9
2.336
0.324
0.302
-0.466
2.288
32.392
A
A
1
2
21.018
B
B
18
17
2.928
11.459
-0.296
-1.368
AA_DC1DA2:DT17DG18_BB
1
-3.550
6.512
30.144
-4.125
0.012
3.201
37.445
A
A
2
3
-8.652
B
B
17
16
3.109
-5.535
0.290
-0.913
AA_DA2DT3:DA16DT17_BB
2
-0.842
1.316
37.038
-0.717
-0.559
2.747
37.904
A
A
3
4
2.044
B
B
16
15
2.799
1.327
-0.248
-0.825
AA_DT3DG4:DC15DA16_BB
3
2.620
-4.038
37.794
-1.414
0.667
3.023
40.752
A
A
4
5
5.086
B
B
15
14
3.104
3.535
0.103
-0.842
AA_DG4DA5:DT14DC15_BB
4
2.900
-4.172
40.506
-1.576
0.153
2.952
34.973
A
A
5
6
5.928
B
B
14
13
3.075
3.553
-0.182
-1.149
AA_DA5DG6:DC13DT14_BB
5
-2.708
4.518
34.696
-2.408
-0.075
3.390
42.940
A
A
6
7
-7.579
B
B
13
12
3.308
-5.527
-0.119
-1.051
AA_DG6DT7:DA12DC13_BB
6
3.786
-5.191
42.438
-0.871
0.550
2.850
40.176
A
A
7
8
11.101
B
B
12
11
2.988
7.570
0.385
-0.621
AA_DT7DA8:DT11DA12_BB
7
4.238
-6.214
39.265
-1.682
-0.125
3.009
30.090
A
A
8
9
-4.014
B
B
11
10
3.047
-2.074
0.252
-0.624
AA_DA8DC9:DG10DT11_BB
8
-4.660
9.018
29.665
-0.807
-1.374
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
1999-12-16
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Residue 14 is replaced by 3-nitropyrrole
RCSB
Y
RCSB
1999-12-06
REL
THIS SEQUENCE WAS CHEMICALLY SYNTHESIZED
sample
THIS SEQUENCE WAS CHEMICALLY SYNTHESIZED
sample
1
2D NOESY
DQF-COSY
7
ambient
278
K
4.5mM duplex, 100mM NaCl, 10mM NaOP, 1mM EDTA
95% H2O/5% D2O
Liu
iterative matrix relaxation
CORMA
5.2
Borgias, James
iterative matrix relaxation
MARDIGRAS
5.2
Delaglio
processing
NMRPipe
7.1
Varian
collection
VNMR
6.1B
Brunger
refinement
X-PLOR
V3.840
Garrett
data analysis
PIPP
4.2.7
600
Varian
INOVA
CYT
1
n
1
DC
1
A
ADE
2
n
2
DA
2
A
THY
3
n
3
DT
3
A
GUA
4
n
4
DG
4
A
ADE
5
n
5
DA
5
A
GUA
6
n
6
DG
6
A
THY
7
n
7
DT
7
A
ADE
8
n
8
DA
8
A
CYT
9
n
9
DC
9
A
GUA
10
n
1
DG
10
B
THY
11
n
2
DT
11
B
ADE
12
n
3
DA
12
B
CYT
13
n
4
DC
13
B
THY
14
n
5
DT
14
B
CYT
15
n
6
DC
15
B
ADE
16
n
7
DA
16
B
THY
17
n
8
DT
17
B
GUA
18
n
9
DG
18
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
B
H21
O2
DG
DC
6
13
1.40
1
A
B
H21
O2
DG
DC
4
15
1.47
1
A
B
O2
H21
DC
DG
1
18
1.48
1
A
B
O2
H21
DC
DG
9
10
1.50
1
A
B
O6
H41
DG
DC
4
15
1.50
1
A
B
H41
O6
DC
DG
9
10
1.54
1
A
B
H1
N3
DG
DC
6
13
1.54
1
A
B
H1
N3
DG
DC
4
15
1.55
1
A
B
N1
H3
DA
DT
8
11
1.56
1
A
B
N1
H3
DA
DT
5
14
1.56
1
A
B
N1
H3
DA
DT
2
17
1.58
1
A
B
O6
H41
DG
DC
6
13
1.58
1
A
B
N3
H1
DC
DG
1
18
1.58
1
A
B
O4
H61
DT
DA
7
12
1.59
1
A
B
H3
N1
DT
DA
7
12
1.59
1
3.62
0.30
108.30
111.92
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
3.31
0.50
113.10
116.41
A
A
A
N7
C8
N9
DG
DG
DG
4
4
4
N
1
4.61
0.30
108.30
112.91
A
A
A
O4'
C1'
N9
DA
DA
DA
5
5
5
N
1
3.80
0.30
108.30
112.10
A
A
A
O4'
C1'
N9
DG
DG
DG
6
6
6
N
1
3.63
0.50
113.10
116.73
A
A
A
N7
C8
N9
DG
DG
DG
6
6
6
N
1
-4.77
0.70
108.00
103.23
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
-5.46
0.80
105.90
100.44
A
A
A
O4'
C1'
C2'
DC
DC
DC
9
9
9
N
1
5.93
0.30
108.30
114.23
A
A
A
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
3.49
0.50
113.10
116.59
B
B
B
N7
C8
N9
DG
DG
DG
10
10
10
N
1
7.72
0.30
108.30
116.02
B
B
B
O4'
C1'
N1
DT
DT
DT
11
11
11
N
1
-6.21
0.60
122.90
116.69
B
B
B
C6
C5
C7
DT
DT
DT
11
11
11
N
1
1.90
0.30
108.30
110.20
B
B
B
O4'
C1'
N9
DA
DA
DA
12
12
12
N
1
3.52
0.30
108.30
111.82
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
3.33
0.50
113.80
117.13
B
B
B
N7
C8
N9
DA
DA
DA
16
16
16
N
1
-3.63
0.60
122.90
119.27
B
B
B
C6
C5
C7
DT
DT
DT
17
17
17
N
1
-6.03
1.00
110.10
104.07
B
B
B
C1'
O4'
C4'
DG
DG
DG
18
18
18
N
1
2.55
0.30
108.30
110.85
B
B
B
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
3.08
0.50
113.10
116.18
B
B
B
N7
C8
N9
DG
DG
DG
18
18
18
N
1
A
A
C5
C7
DT
DT
7
7
0.046
0.006
1.496
1.542
N
1
B
B
C5
C7
DT
DT
17
17
0.038
0.006
1.496
1.534
N
SOLUTION STRUCTURE ANALYSIS OF THE DNA DUPLEX D(CATGAGTAC)D(GTACTCATG)
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
18
B
N1
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
18
B
O6
DG
9
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
18
B
N2
DG
9
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N1
DA
2
1_555
B
DT
17
B
N3
DT
8
1_555
hydrog
WATSON-CRICK
A
DA
2
A
N6
DA
2
1_555
B
DT
17
B
O4
DT
8
1_555
hydrog
WATSON-CRICK
A
DT
3
A
N3
DT
3
1_555
B
DA
16
B
N1
DA
7
1_555
hydrog
WATSON-CRICK
A
DT
3
A
O4
DT
3
1_555
B
DA
16
B
N6
DA
7
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
15
B
N3
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
15
B
O2
DC
6
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
15
B
N4
DC
6
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N1
DA
5
1_555
B
DT
14
B
N3
DT
5
1_555
hydrog
WATSON-CRICK
A
DA
5
A
N6
DA
5
1_555
B
DT
14
B
O4
DT
5
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
13
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
13
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
13
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DT
7
A
N3
DT
7
1_555
B
DA
12
B
N1
DA
3
1_555
hydrog
WATSON-CRICK
A
DT
7
A
O4
DT
7
1_555
B
DA
12
B
N6
DA
3
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
11
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
11
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N3
DC
9
1_555
B
DG
10
B
N1
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
9
A
N4
DC
9
1_555
B
DG
10
B
O6
DG
1
1_555
hydrog
WATSON-CRICK
A
DC
9
A
O2
DC
9
1_555
B
DG
10
B
N2
DG
1
1_555
DNA
DNA, DUPLEX
1DK9
PDB
1
1DK9
1DK9
PDB
2
1DK9
1
9
1DK9
1
9
1DK9
A
1
1
9
10
18
1DK9
10
18
1DK9
B
2
1
9
1
P 1