1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Wang, D.C. Gao, G.H. Shao, F. Dai, J.X. Wang, J.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 40 10973 10978 10.1021/bi010167k 11551192 Solution structure of PAFP-S: a new knottin-type antifungal peptide from the seeds of Phytolacca americana 2001 10.2210/pdb1dkc/pdb pdb_00001dkc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3939.489 ANTIFUNGAL PEPTIDE 1 nat polymer PAFP-S no no AGCIKNGGRCNASAGPPYCCSSYCFQIAGQSYGVCKNR AGCIKNGGRCNASAGPPYCCSSYCFQIAGQSYGVCKNR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n American pokeweed SEED Phytolacca sample 3527 Phytolacca americana database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-12-13 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 1999-12-07 REL REL THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR TECHNIQUES structures with the lowest energy 30 10 2D NOESY DQF-COSY 2D COSY 2D TOCSY E-COSY 2D NOESY NA 3.5 AMBIENT 300 K SIMULATED ANNEALING MOLECULAR DYNAMICS 1 closest to the average 4MM PROTEIN, 0.2 MM DSS 4MM PROTEIN, 0.2 MM DSS BRUKER collection UXNMR 1.0 BIOSYM processing Felix 97 BRUNGER refinement X-PLOR 3.851 600 Bruker DMX ALA 1 n 1 ALA 1 A GLY 2 n 2 GLY 2 A CYS 3 n 3 CYS 3 A ILE 4 n 4 ILE 4 A LYS 5 n 5 LYS 5 A ASN 6 n 6 ASN 6 A GLY 7 n 7 GLY 7 A GLY 8 n 8 GLY 8 A ARG 9 n 9 ARG 9 A CYS 10 n 10 CYS 10 A ASN 11 n 11 ASN 11 A ALA 12 n 12 ALA 12 A SER 13 n 13 SER 13 A ALA 14 n 14 ALA 14 A GLY 15 n 15 GLY 15 A PRO 16 n 16 PRO 16 A PRO 17 n 17 PRO 17 A TYR 18 n 18 TYR 18 A CYS 19 n 19 CYS 19 A CYS 20 n 20 CYS 20 A SER 21 n 21 SER 21 A SER 22 n 22 SER 22 A TYR 23 n 23 TYR 23 A CYS 24 n 24 CYS 24 A PHE 25 n 25 PHE 25 A GLN 26 n 26 GLN 26 A ILE 27 n 27 ILE 27 A ALA 28 n 28 ALA 28 A GLY 29 n 29 GLY 29 A GLN 30 n 30 GLN 30 A SER 31 n 31 SER 31 A TYR 32 n 32 TYR 32 A GLY 33 n 33 GLY 33 A VAL 34 n 34 VAL 34 A CYS 35 n 35 CYS 35 A LYS 36 n 36 LYS 36 A ASN 37 n 37 ASN 37 A ARG 38 n 38 ARG 38 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 10 A N CYS 10 A O GLY 33 A O GLY 33 A O LYS 36 A O LYS 36 A N TYR 23 A N TYR 23 1 A O ARG 38 A O ARG 38 1 Y 2 A O ARG 38 A O ARG 38 1 Y 3 A O ARG 38 A O ARG 38 1 Y 4 A O ARG 38 A O ARG 38 1 Y 5 A O ARG 38 A O ARG 38 1 Y 6 A O ARG 38 A O ARG 38 1 Y 7 A O ARG 38 A O ARG 38 1 Y 8 A O ARG 38 A O ARG 38 1 Y 9 A O ARG 38 A O ARG 38 1 Y 10 A O ARG 38 A O ARG 38 1 Y 1 A A HZ3 OG LYS SER 5 21 1.31 1 A A HZ2 OD1 LYS ASN 36 37 1.33 1 A A OD1 HZ1 ASN LYS 6 36 1.34 1 A A OG HH22 SER ARG 22 38 1.38 1 A A HG OG SER SER 13 31 1.39 1 A A H O PHE VAL 25 34 1.47 1 A A HZ2 O LYS CYS 5 20 1.53 1 A A O H GLY CYS 8 35 1.54 1 A A HH12 OD1 ARG ASN 9 11 1.55 2 A A O HZ3 CYS LYS 3 5 1.36 2 A A OD1 HZ3 ASN LYS 6 36 1.44 2 A A O HH GLY TYR 2 18 1.45 2 A A H O PHE VAL 25 34 1.51 2 A A HG OD1 SER ASN 21 37 1.55 2 A A O HG SER SER 21 22 1.57 3 A A OD1 HZ3 ASN LYS 6 36 1.35 3 A A HZ1 OD1 LYS ASN 36 37 1.35 3 A A HG O SER LYS 21 36 1.43 3 A A HZ3 O LYS CYS 5 20 1.44 3 A A O HH22 GLY ARG 7 9 1.47 3 A A O HH ALA TYR 28 32 1.49 3 A A H O PHE VAL 25 34 1.52 3 A A O H GLY CYS 8 35 1.55 3 A A O HG SER SER 21 22 1.55 4 A A HZ1 OD1 LYS ASN 5 6 1.37 4 A A O HZ2 LYS LYS 5 36 1.39 4 A A HZ3 OD1 LYS ASN 36 37 1.47 4 A A O HH21 GLY ARG 7 9 1.47 4 A A O HH GLY TYR 2 18 1.49 4 A A H O PHE VAL 25 34 1.49 5 A A HZ2 OD1 LYS ASN 5 37 1.35 5 A A OD1 HZ2 ASN LYS 6 36 1.37 5 A A O HH21 SER ARG 22 38 1.48 5 A A H OE1 ALA GLN 12 26 1.48 5 A A H O PHE VAL 25 34 1.50 5 A A O HG LYS SER 5 21 1.56 5 A A O H GLY CYS 8 35 1.56 5 A A HD22 O ASN SER 11 31 1.58 5 A A O H PHE VAL 25 34 1.59 6 A A HZ3 OG LYS SER 5 21 1.30 6 A A OD1 HZ3 ASN LYS 6 36 1.40 6 A A H OE1 ALA GLN 12 26 1.45 6 A A H O PHE VAL 25 34 1.48 6 A A O HH11 GLY ARG 8 9 1.50 6 A A OD1 HG ASN SER 11 31 1.57 6 A A HD22 OD1 ASN ASN 6 37 1.60 7 A A HZ1 OD1 LYS ASN 5 6 1.34 7 A A OG HH21 SER ARG 22 38 1.42 7 A A O HH GLY TYR 2 18 1.46 7 A A H O PHE VAL 25 34 1.48 7 A A HD21 OG ASN SER 11 31 1.49 7 A A O HH21 GLY ARG 8 9 1.49 7 A A HE O ARG GLY 9 33 1.52 8 A A HZ1 OD1 LYS ASN 5 37 1.34 8 A A HZ2 OD1 LYS ASN 5 6 1.35 8 A A OG HH22 SER ARG 22 38 1.41 8 A A OD1 HG ASN SER 11 31 1.45 8 A A H O PHE VAL 25 34 1.51 8 A A O HH12 SER ARG 22 38 1.53 8 A A HG O SER ASN 21 37 1.54 9 A A HZ3 OD1 LYS ASN 5 6 1.34 9 A A HZ3 OD1 LYS ASN 36 37 1.36 9 A A O HH GLY TYR 2 18 1.45 9 A A H O PHE VAL 25 34 1.50 9 A A HH11 O ARG GLY 9 33 1.57 10 A A OD1 HZ1 ASN LYS 6 36 1.34 10 A A O HH ALA TYR 1 18 1.44 10 A A HG O SER ASN 21 37 1.47 10 A A H O PHE VAL 25 34 1.49 10 A A HD22 OG ASN SER 11 31 1.54 10 A A OD1 HE21 ASN GLN 11 26 1.54 1 A ARG 9 0.311 SIDE CHAIN 1 A ARG 38 0.311 SIDE CHAIN 2 A ARG 9 0.318 SIDE CHAIN 2 A ARG 38 0.287 SIDE CHAIN 3 A ARG 9 0.315 SIDE CHAIN 3 A ARG 38 0.282 SIDE CHAIN 4 A ARG 9 0.307 SIDE CHAIN 4 A ARG 38 0.289 SIDE CHAIN 5 A ARG 9 0.312 SIDE CHAIN 5 A ARG 38 0.293 SIDE CHAIN 6 A ARG 9 0.291 SIDE CHAIN 6 A ARG 38 0.290 SIDE CHAIN 7 A ARG 9 0.310 SIDE CHAIN 7 A ARG 38 0.314 SIDE CHAIN 8 A ARG 9 0.286 SIDE CHAIN 8 A ARG 38 0.258 SIDE CHAIN 9 A ARG 9 0.302 SIDE CHAIN 9 A ARG 38 0.271 SIDE CHAIN 10 A ARG 9 0.261 SIDE CHAIN 10 A ARG 38 0.264 SIDE CHAIN 1 A PRO 17 -75.91 -78.51 1 A SER 22 71.13 -4.14 1 A ASN 37 -76.66 -167.30 2 A LYS 5 -76.71 -72.94 2 A SER 21 -98.93 -73.49 2 A SER 22 -174.33 23.74 3 A SER 21 -112.90 -75.46 3 A SER 22 -172.38 14.12 3 A GLN 30 -151.79 -80.26 3 A SER 31 174.33 71.66 3 A ASN 37 -60.60 -76.81 4 A ASN 6 -97.42 51.37 4 A ALA 14 -121.16 -71.38 4 A SER 21 -101.10 -73.36 4 A SER 22 -168.90 18.65 4 A ASN 37 -69.34 -83.57 5 A PRO 17 -74.16 -164.52 5 A SER 21 -101.11 -75.00 5 A SER 22 -175.64 18.48 6 A SER 13 -101.78 44.57 6 A SER 22 83.68 -3.17 6 A ASN 37 -55.23 -80.79 7 A ASN 11 -166.41 -169.91 7 A SER 22 84.27 -5.04 7 A ASN 37 -68.40 -89.57 8 A ALA 14 -129.79 -70.92 8 A SER 21 -109.90 -75.39 8 A SER 22 -170.46 25.34 8 A SER 31 70.61 60.46 9 A ASN 11 -160.21 -169.91 9 A SER 21 -107.46 -73.23 9 A SER 22 -171.17 15.84 9 A ASN 37 -75.51 -76.01 10 A ASN 11 -161.19 -141.88 10 A SER 13 -126.83 -166.52 10 A PRO 17 -96.49 40.62 10 A SER 21 -99.28 -72.27 10 A SER 22 -173.37 13.17 SOLUTION STRUCTURE OF PAFP-S, AN ANTIFUNGAL PEPTIDE FROM THE SEEDS OF PHYTOLACCA AMERICANA 1 N N disulf 2.027 A CYS 3 A SG CYS 3 1_555 A CYS 20 A SG CYS 20 1_555 disulf 2.024 A CYS 10 A SG CYS 10 1_555 A CYS 24 A SG CYS 24 1_555 disulf 2.021 A CYS 19 A SG CYS 19 1_555 A CYS 35 A SG CYS 35 1_555 ANTIFUNGAL PROTEIN THREE-STRANDS BETA SHEET, ANTIFUNGAL PROTEIN PAFP_PHYAM UNP 1 P81418 28 65 1DKC 1 38 P81418 A 1 1 38 3 anti-parallel anti-parallel A GLY 8 A GLY 8 A CYS 10 A CYS 10 A TYR 32 A TYR 32 A LYS 36 A LYS 36 A TYR 23 A TYR 23 A ILE 27 A ILE 27 1 P 1