1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Wang, X.H.
King, G.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
7
505
513
10.1038/75921
10881200
Discovery and characterization of a family of insecticidal neurotoxins with a rare vicinal disulfide bridge.
2000
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
4
559
566
The Structure of a Novel Insecticidal Neurotoxin, Omega-Atracotoxin-HV1, from the Venom of an Australian Funnel Web Spider
1997
10.2210/pdb1dl0/pdb
pdb_00001dl0
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3772.317
J-ATRACOTOXIN-HV1C
1
syn
polymer
no
no
AICTGADRPCAACCPCCPGTSCKAESNGVSYCRKDEP
AICTGADRPCAACCPCCPGTSCKAESNGVSYCRKDEP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-09-15
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
RCSB
Y
RCSB
1999-12-08
REL
REL
THIS SEQUENCE OCCURS NATURALLY IN THE SPIDER, HADRONYCHE VERSUTA. THE PEPTIDE WAS CHEMICALLY SYNTHESIZED FOR NMR STUDIES USING STANDARD T-BOC CHEMISTRY AND OXIDIZED/FOLDED IN A GLUTATHIONE REDOX BUFFER.
sample
THIS STRUCTURE WAS DETERMINED USING STANDARD 2D HOMONUCLEAR NMR TECHNIQUES.
structures with the lowest energy
100
20
H2O 2D NOESY
2D TOCSY
E-COSY
D2O 2D NOESY
0.005
4.95
1
atm
298
K
THE STRUCTURES ARE BASED ON A TOTAL OF 403 NOE-DERIVED DISTANCE RESTRAINTS, 41
DIHEDRAL-ANGLE RESTRAINTS, PLUS 56 RESTRAINTS DEFINING 14 HYDROGEN BONDS.
DYNAMICAL SIMULATED ANNEALING
1
lowest energy
1.6 MM J-ATRACOTOXIN-HV1C
1.6 MM J-ATRACOTOXIN-HV1C
BRUKER ANALYTIK GMBH
collection
XwinNMR
2.0
BRUKER ANALYTIK GMBH
processing
XwinNMR
2.0
XIA, BARTELS
data analysis
XEASY
1.3.13
GUENTERT
structure solution
DYANA
1.5
BRUNGER
refinement
X-PLOR
3.8
KORADI
data analysis
MOLMOL
2.6
600
Bruker
AVANCE
ALA
1
n
1
ALA
1
A
ILE
2
n
2
ILE
2
A
CYS
3
n
3
CYS
3
A
THR
4
n
4
THR
4
A
GLY
5
n
5
GLY
5
A
ALA
6
n
6
ALA
6
A
ASP
7
n
7
ASP
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
CYS
10
n
10
CYS
10
A
ALA
11
n
11
ALA
11
A
ALA
12
n
12
ALA
12
A
CYS
13
n
13
CYS
13
A
CYS
14
n
14
CYS
14
A
PRO
15
n
15
PRO
15
A
CYS
16
n
16
CYS
16
A
CYS
17
n
17
CYS
17
A
PRO
18
n
18
PRO
18
A
GLY
19
n
19
GLY
19
A
THR
20
n
20
THR
20
A
SER
21
n
21
SER
21
A
CYS
22
n
22
CYS
22
A
LYS
23
n
23
LYS
23
A
ALA
24
n
24
ALA
24
A
GLU
25
n
25
GLU
25
A
SER
26
n
26
SER
26
A
ASN
27
n
27
ASN
27
A
GLY
28
n
28
GLY
28
A
VAL
29
n
29
VAL
29
A
SER
30
n
30
SER
30
A
TYR
31
n
31
TYR
31
A
CYS
32
n
32
CYS
32
A
ARG
33
n
33
ARG
33
A
LYS
34
n
34
LYS
34
A
ASP
35
n
35
ASP
35
A
GLU
36
n
36
GLU
36
A
PRO
37
n
37
PRO
37
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
23
A
N
LYS
23
A
O
TYR
31
A
O
TYR
31
1
A
A
O
H
ARG
CYS
8
32
1.59
3
A
A
O
H
ARG
CYS
8
32
1.58
4
A
A
O
H
ARG
CYS
8
32
1.60
5
A
A
O
H
ARG
CYS
8
32
1.58
7
A
A
O
H
ARG
CYS
8
32
1.57
9
A
A
O
H
ARG
CYS
8
32
1.60
10
A
A
O
H
ARG
CYS
8
32
1.58
12
A
A
O
H
ARG
CYS
8
32
1.58
13
A
A
O
H
ARG
CYS
8
32
1.59
15
A
A
O
H
ARG
CYS
8
32
1.57
16
A
A
O
H
ARG
CYS
8
32
1.57
17
A
A
O
H
ARG
CYS
8
32
1.59
18
A
A
O
H
ARG
CYS
8
32
1.56
19
A
A
O
H
ARG
CYS
8
32
1.58
20
A
A
O
H
ARG
CYS
8
32
1.58
1
A
A
CYS
CYS
13
14
-132.66
2
A
A
CYS
CYS
13
14
-135.54
3
A
A
CYS
CYS
13
14
-134.72
4
A
A
CYS
CYS
13
14
-132.28
5
A
A
CYS
CYS
13
14
-134.63
6
A
A
CYS
CYS
13
14
-136.47
7
A
A
CYS
CYS
13
14
-135.76
8
A
A
CYS
CYS
13
14
-136.81
9
A
A
CYS
CYS
13
14
-131.26
10
A
A
CYS
CYS
13
14
-130.64
11
A
A
CYS
CYS
13
14
-134.90
12
A
A
CYS
CYS
13
14
-133.64
13
A
A
CYS
CYS
13
14
-135.28
14
A
A
CYS
CYS
13
14
-134.82
15
A
A
CYS
CYS
13
14
-136.20
16
A
A
CYS
CYS
13
14
-134.61
17
A
A
CYS
CYS
13
14
-137.32
18
A
A
CYS
CYS
13
14
-137.35
19
A
A
CYS
CYS
13
14
-134.54
20
A
A
CYS
CYS
13
14
-134.93
1
A
THR
4
-81.27
-73.42
1
A
CYS
10
-53.39
170.45
2
A
THR
4
-79.92
-73.70
2
A
LYS
34
-55.22
105.19
2
A
ASP
35
-60.67
-176.98
2
A
GLU
36
-155.13
82.35
3
A
THR
4
-79.83
-72.16
3
A
ASP
7
49.89
25.48
3
A
CYS
10
-56.12
173.21
3
A
LYS
34
-56.39
106.99
4
A
THR
4
-80.47
-71.92
4
A
CYS
10
-53.34
172.86
4
A
LYS
34
-57.31
90.99
5
A
THR
4
-80.61
-72.22
5
A
ASP
7
49.80
24.97
5
A
CYS
10
-53.36
172.26
6
A
THR
4
-81.04
-72.49
6
A
CYS
10
-57.35
173.82
6
A
GLU
36
-155.13
68.41
7
A
THR
4
-81.46
-74.09
7
A
ASP
7
49.15
25.32
7
A
CYS
10
-56.44
173.74
8
A
CYS
10
-56.43
175.35
9
A
THR
4
-80.56
-73.53
10
A
THR
4
-85.16
-71.09
10
A
ASP
7
49.74
25.07
10
A
CYS
10
-55.06
172.11
10
A
LYS
34
-54.84
94.29
11
A
THR
4
-81.38
-76.08
11
A
ASP
7
49.59
25.62
12
A
THR
4
-80.60
-73.10
12
A
ASP
7
48.95
25.56
12
A
CYS
10
-53.94
172.22
12
A
LYS
34
-54.70
94.09
13
A
THR
4
-79.41
-70.71
13
A
CYS
10
-55.11
171.74
14
A
THR
4
-80.71
-73.73
14
A
CYS
10
-55.53
172.18
14
A
ASP
35
-58.27
172.78
15
A
THR
4
-81.28
-71.45
15
A
CYS
10
-54.55
170.68
16
A
THR
4
-80.35
-75.31
16
A
ASP
7
48.98
25.48
16
A
CYS
10
-53.87
170.79
16
A
LYS
34
-54.91
96.87
17
A
THR
4
-90.36
-68.83
17
A
CYS
10
-54.96
171.39
17
A
GLU
36
-154.09
84.31
18
A
THR
4
-91.52
-70.70
18
A
ASP
7
49.85
24.84
18
A
CYS
10
-59.23
174.14
18
A
ASP
35
-64.19
-177.08
19
A
THR
4
-80.72
-71.74
19
A
CYS
10
-54.66
172.85
19
A
LYS
34
-55.55
93.59
20
A
CYS
10
-54.52
172.37
SOLUTION STRUCTURE OF THE INSECTICIDAL NEUROTOXIN J-ATRACOTOXIN-HV1C
1
N
N
disulf
2.023
A
CYS
3
A
SG
CYS
3
1_555
A
CYS
17
A
SG
CYS
17
1_555
disulf
2.022
A
CYS
10
A
SG
CYS
10
1_555
A
CYS
22
A
SG
CYS
22
1_555
disulf
2.022
A
CYS
13
A
SG
CYS
13
1_555
A
CYS
14
A
SG
CYS
14
1_555
disulf
2.022
A
CYS
16
A
SG
CYS
16
1_555
A
CYS
32
A
SG
CYS
32
1_555
TOXIN
NEUROTOXIN, ATRACOTOXIN, INSECTICIDAL, CYSTINE KNOT, VICINAL DISULFIDE, TOXIN
TJT1C_HADVE
UNP
1
1
P82228
1
37
1DL0
1
37
P82228
A
1
1
37
2
anti-parallel
A
THR
20
A
THR
20
A
ALA
24
A
ALA
24
A
SER
30
A
SER
30
A
LYS
34
A
LYS
34
1
P 1