14.45 20.233 10.705 27.131 A O5' DC 1001 ATOM A O5' DC 1 1 1.00 1 O 15.30 19.357 11.811 27.329 A C5' DC 1001 ATOM A C5' DC 1 1 1.00 1 C 16.26 18.547 11.889 25.954 A C4' DC 1001 ATOM A C4' DC 1 1 1.00 1 C 16.97 19.316 12.290 24.812 A O4' DC 1001 ATOM A O4' DC 1 1 1.00 1 O 14.61 17.693 10.597 25.678 A C3' DC 1001 ATOM A C3' DC 1 1 1.00 1 C 14.54 16.484 10.904 26.381 A O3' DC 1001 ATOM A O3' DC 1 1 1.00 1 O 16.23 17.417 10.992 24.140 A C2' DC 1001 ATOM A C2' DC 1 1 1.00 1 C 18.28 18.793 11.519 23.574 A C1' DC 1001 ATOM A C1' DC 1 1 1.00 1 C 13.17 19.878 10.726 23.109 A N1 DC 1001 ATOM A N1 DC 1 1 1.00 1 N 10.24 20.015 10.735 21.733 A C2 DC 1001 ATOM A C2 DC 1 1 1.00 1 C 15.82 19.230 11.382 21.021 A O2 DC 1001 ATOM A O2 DC 1 1 1.00 1 O 11.43 21.028 10.007 21.183 A N3 DC 1001 ATOM A N3 DC 1 1 1.00 1 N 13.52 21.863 9.315 21.957 A C4 DC 1001 ATOM A C4 DC 1 1 1.00 1 C 16.00 22.843 8.617 21.364 A N4 DC 1001 ATOM A N4 DC 1 1 1.00 1 N 16.80 21.739 9.298 23.404 A C5 DC 1001 ATOM A C5 DC 1 1 1.00 1 C 12.11 20.726 10.025 23.909 A C6 DC 1001 ATOM A C6 DC 1 1 1.00 1 C 19.85 15.495 9.646 26.688 A P DG 1002 ATOM A P DG 1 2 1.00 1 P 19.23 14.379 10.066 27.568 A OP1 DG 1002 ATOM A OP1 DG 1 2 1.00 1 O 18.77 16.328 8.509 27.113 A OP2 DG 1002 ATOM A OP2 DG 1 2 1.00 1 O 17.27 14.897 9.401 25.222 A O5' DG 1002 ATOM A O5' DG 1 2 1.00 1 O 20.87 13.891 8.421 25.176 A C5' DG 1002 ATOM A C5' DG 1 2 1.00 1 C 24.05 13.362 8.476 23.647 A C4' DG 1002 ATOM A C4' DG 1 2 1.00 1 C 19.34 14.322 7.992 22.660 A O4' DG 1002 ATOM A O4' DG 1 2 1.00 1 O 19.24 12.002 7.672 23.553 A C3' DG 1002 ATOM A C3' DG 1 2 1.00 1 C 18.13 11.425 8.235 22.397 A O3' DG 1002 ATOM A O3' DG 1 2 1.00 1 O 22.81 12.692 6.306 23.096 A C2' DG 1002 ATOM A C2' DG 1 2 1.00 1 C 22.24 13.840 6.666 22.057 A C1' DG 1002 ATOM A C1' DG 1 2 1.00 1 C 16.97 15.116 5.831 22.183 A N9 DG 1002 ATOM A N9 DG 1 2 1.00 1 N 15.93 15.769 5.412 23.331 A C8 DG 1002 ATOM A C8 DG 1 2 1.00 1 C 20.84 16.860 4.696 23.067 A N7 DG 1002 ATOM A N7 DG 1 2 1.00 1 N 15.35 16.899 4.659 21.670 A C5 DG 1002 ATOM A C5 DG 1 2 1.00 1 C 15.42 17.835 4.040 20.820 A C6 DG 1002 ATOM A C6 DG 1 2 1.00 1 C 16.20 18.837 3.387 21.111 A O6 DG 1002 ATOM A O6 DG 1 2 1.00 1 O 12.13 17.565 4.207 19.440 A N1 DG 1002 ATOM A N1 DG 1 2 1.00 1 N 17.01 16.475 4.918 19.023 A C2 DG 1002 ATOM A C2 DG 1 2 1.00 1 C 11.10 16.305 5.019 17.676 A N2 DG 1002 ATOM A N2 DG 1 2 1.00 1 N 19.33 15.594 5.501 19.808 A N3 DG 1002 ATOM A N3 DG 1 2 1.00 1 N 16.25 15.849 5.343 21.136 A C4 DG 1002 ATOM A C4 DG 1 2 1.00 1 C 23.22 9.913 7.665 22.152 A P DT 1003 ATOM A P DT 1 3 1.00 1 P 25.54 9.087 8.804 21.746 A OP1 DT 1003 ATOM A OP1 DT 1 3 1.00 1 O 27.63 9.557 6.774 23.262 A OP2 DT 1003 ATOM A OP2 DT 1 3 1.00 1 O 18.43 10.224 6.723 20.885 A O5' DT 1003 ATOM A O5' DT 1 3 1.00 1 O 13.00 10.600 7.356 19.691 A C5' DT 1003 ATOM A C5' DT 1 3 1.00 1 C 22.52 10.709 6.034 18.755 A C4' DT 1003 ATOM A C4' DT 1 3 1.00 1 C 30.00 11.919 5.278 19.022 A O4' DT 1003 ATOM A O4' DT 1 3 1.00 1 O 28.57 9.408 5.167 18.944 A C3' DT 1003 ATOM A C3' DT 1 3 1.00 1 C 37.57 9.284 4.638 17.632 A O3' DT 1003 ATOM A O3' DT 1 3 1.00 1 O 22.44 10.072 4.006 19.801 A C2' DT 1003 ATOM A C2' DT 1 3 1.00 1 C 23.11 11.543 3.794 19.225 A C1' DT 1003 ATOM A C1' DT 1 3 1.00 1 C 26.24 12.557 3.179 20.009 A N1 DT 1003 ATOM A N1 DT 1 3 1.00 1 N 22.78 13.590 2.643 19.228 A C2 DT 1003 ATOM A C2 DT 1 3 1.00 1 C 19.74 13.556 2.730 18.000 A O2 DT 1003 ATOM A O2 DT 1 3 1.00 1 O 17.57 14.550 2.063 19.991 A N3 DT 1003 ATOM A N3 DT 1 3 1.00 1 N 17.10 14.662 1.923 21.345 A C4 DT 1003 ATOM A C4 DT 1 3 1.00 1 C 26.93 15.625 1.354 21.829 A O4 DT 1003 ATOM A O4 DT 1 3 1.00 1 O 21.77 13.554 2.502 22.081 A C5 DT 1003 ATOM A C5 DT 1 3 1.00 1 C 26.25 13.516 2.443 23.601 A C7 DT 1003 ATOM A C7 DT 1 3 1.00 1 C 23.65 12.579 3.091 21.369 A C6 DT 1003 ATOM A C6 DT 1 3 1.00 1 C 35.06 7.844 4.664 16.853 A P DA 1004 ATOM A P DA 1 4 1.00 1 P 49.72 7.504 6.044 16.546 A OP1 DA 1004 ATOM A OP1 DA 1 4 1.00 1 O 28.04 6.997 3.680 17.561 A OP2 DA 1004 ATOM A OP2 DA 1 4 1.00 1 O 26.40 8.289 3.947 15.484 A O5' DA 1004 ATOM A O5' DA 1 4 1.00 1 O 29.84 9.187 4.536 14.588 A C5' DA 1004 ATOM A C5' DA 1 4 1.00 1 C 14.86 9.865 3.222 13.910 A C4' DA 1004 ATOM A C4' DA 1 4 1.00 1 C 15.74 10.762 2.533 14.813 A O4' DA 1004 ATOM A O4' DA 1 4 1.00 1 O 16.10 8.758 2.323 13.295 A C3' DA 1004 ATOM A C3' DA 1 4 1.00 1 C 14.48 9.362 1.860 12.101 A O3' DA 1004 ATOM A O3' DA 1 4 1.00 1 O 12.91 8.876 1.141 14.340 A C2' DA 1004 ATOM A C2' DA 1 4 1.00 1 C 19.32 10.363 1.052 14.856 A C1' DA 1004 ATOM A C1' DA 1 4 1.00 1 C 16.98 10.536 0.777 16.334 A N9 DA 1004 ATOM A N9 DA 1 4 1.00 1 N 17.17 9.670 1.077 17.365 A C8 DA 1004 ATOM A C8 DA 1 4 1.00 1 C 15.44 10.168 0.684 18.519 A N7 DA 1004 ATOM A N7 DA 1 4 1.00 1 N 17.85 11.408 0.100 18.234 A C5 DA 1004 ATOM A C5 DA 1 4 1.00 1 C 12.40 12.429 -0.506 19.019 A C6 DA 1004 ATOM A C6 DA 1 4 1.00 1 C 17.16 12.284 -0.603 20.352 A N6 DA 1004 ATOM A N6 DA 1 4 1.00 1 N 13.88 13.527 -0.975 18.422 A N1 DA 1004 ATOM A N1 DA 1 4 1.00 1 N 10.38 13.641 -0.863 17.092 A C2 DA 1004 ATOM A C2 DA 1 4 1.00 1 C 18.86 12.739 -0.306 16.230 A N3 DA 1004 ATOM A N3 DA 1 4 1.00 1 N 16.50 11.650 0.154 16.885 A C4 DA 1004 ATOM A C4 DA 1 4 1.00 1 C 17.31 8.550 0.779 11.149 A P DC 1005 ATOM A P DC 1 5 1.00 1 P 18.34 9.001 1.080 9.760 A OP1 DC 1005 ATOM A OP1 DC 1 5 1.00 1 O 19.25 7.143 0.802 11.565 A OP2 DC 1005 ATOM A OP2 DC 1 5 1.00 1 O 13.64 9.203 -0.597 11.570 A O5' DC 1005 ATOM A O5' DC 1 5 1.00 1 O 14.75 10.545 -0.776 11.167 A C5' DC 1005 ATOM A C5' DC 1 5 1.00 1 C 14.53 10.924 -2.183 11.875 A C4' DC 1005 ATOM A C4' DC 1 5 1.00 1 C 14.68 11.007 -2.004 13.336 A O4' DC 1005 ATOM A O4' DC 1 5 1.00 1 O 14.24 9.908 -3.274 11.463 A C3' DC 1005 ATOM A C3' DC 1 5 1.00 1 C 14.30 10.671 -4.444 11.287 A O3' DC 1005 ATOM A O3' DC 1 5 1.00 1 O 11.67 9.191 -3.430 12.878 A C2' DC 1005 ATOM A C2' DC 1 5 1.00 1 C 14.57 10.366 -3.221 13.958 A C1' DC 1005 ATOM A C1' DC 1 5 1.00 1 C 11.72 10.009 -3.023 15.316 A N1 DC 1005 ATOM A N1 DC 1 5 1.00 1 N 12.47 10.976 -3.437 16.211 A C2 DC 1005 ATOM A C2 DC 1 5 1.00 1 C 13.78 12.037 -3.926 15.851 A O2 DC 1005 ATOM A O2 DC 1 5 1.00 1 O 11.34 10.709 -3.289 17.545 A N3 DC 1005 ATOM A N3 DC 1 5 1.00 1 N 15.17 9.538 -2.748 17.883 A C4 DC 1005 ATOM A C4 DC 1 5 1.00 1 C 17.42 9.249 -2.582 19.207 A N4 DC 1005 ATOM A N4 DC 1 5 1.00 1 N 10.05 8.530 -2.313 16.991 A C5 DC 1005 ATOM A C5 DC 1 5 1.00 1 C 12.01 8.796 -2.464 15.646 A C6 DC 1005 ATOM A C6 DC 1 5 1.00 1 C 18.84 10.107 -5.509 10.175 A P DG 1006 ATOM A P DG 1 6 1.00 1 P 22.53 10.731 -5.137 8.853 A OP1 DG 1006 ATOM A OP1 DG 1 6 1.00 1 O 15.88 8.657 -5.552 10.302 A OP2 DG 1006 ATOM A OP2 DG 1 6 1.00 1 O 18.36 10.852 -6.826 10.587 A O5' DG 1006 ATOM A O5' DG 1 6 1.00 1 O 16.62 10.363 -7.246 11.797 A C5' DG 1006 ATOM A C5' DG 1 6 1.00 1 C 20.17 10.795 -8.817 11.885 A C4' DG 1006 ATOM A C4' DG 1 6 1.00 1 C 19.82 10.502 -9.222 13.268 A O4' DG 1006 ATOM A O4' DG 1 6 1.00 1 O 21.74 9.965 -9.645 10.847 A C3' DG 1006 ATOM A C3' DG 1 6 1.00 1 C 25.49 10.669 -10.876 10.774 A O3' DG 1006 ATOM A O3' DG 1 6 1.00 1 O 23.83 8.733 -9.951 11.805 A C2' DG 1006 ATOM A C2' DG 1 6 1.00 1 C 20.94 9.318 -10.181 13.248 A C1' DG 1006 ATOM A C1' DG 1 6 1.00 1 C 18.61 8.430 -9.706 14.393 A N9 DG 1006 ATOM A N9 DG 1 6 1.00 1 N 14.01 7.236 -9.055 14.374 A C8 DG 1006 ATOM A C8 DG 1 6 1.00 1 C 16.43 6.748 -8.796 15.577 A N7 DG 1006 ATOM A N7 DG 1 6 1.00 1 N 18.41 7.712 -9.328 16.432 A C5 DG 1006 ATOM A C5 DG 1 6 1.00 1 C 14.61 7.743 -9.353 17.844 A C6 DG 1006 ATOM A C6 DG 1 6 1.00 1 C 12.51 6.885 -8.891 18.632 A O6 DG 1006 ATOM A O6 DG 1 6 1.00 1 O 13.76 8.905 -9.988 18.334 A N1 DG 1006 ATOM A N1 DG 1 6 1.00 1 N 7.69 9.888 -10.521 17.538 A C2 DG 1006 ATOM A C2 DG 1 6 1.00 1 C 13.89 10.968 -11.112 18.137 A N2 DG 1006 ATOM A N2 DG 1 6 1.00 1 N 10.36 9.863 -10.497 16.205 A N3 DG 1006 ATOM A N3 DG 1 6 1.00 1 N 14.24 8.751 -9.887 15.723 A C4 DG 1006 ATOM A C4 DG 1 6 1.00 1 C 14.78 19.714 7.034 15.752 A C8 DA7 3014 HETATM B C8 DA7 2 1.00 1 C 12.96 20.838 6.469 15.181 A C7 DA7 3014 HETATM B C7 DA7 2 1.00 1 C 14.84 21.835 5.908 15.986 A C6 DA7 3014 HETATM B C6 DA7 2 1.00 1 C 16.62 21.656 5.863 17.363 A C5 DA7 3014 HETATM B C5 DA7 2 1.00 1 C 25.11 22.574 5.193 18.155 A F DA7 3014 HETATM B F DA7 2 1.00 1 F 15.38 20.448 6.373 19.297 A N10 DA7 3014 HETATM B N10 DA7 2 1.00 1 N 25.87 19.412 6.980 21.380 A C4 DA7 3014 HETATM B C4 DA7 2 1.00 1 C 23.05 18.328 7.605 22.028 A C3 DA7 3014 HETATM B C3 DA7 2 1.00 1 C 21.43 17.345 8.268 21.342 A C2 DA7 3014 HETATM B C2 DA7 2 1.00 1 C 21.42 17.402 8.316 19.968 A C1 DA7 3014 HETATM B C1 DA7 2 1.00 1 C 18.42 19.538 7.047 17.165 A C13 DA7 3014 HETATM B C13 DA7 2 1.00 1 C 19.79 20.540 6.420 17.977 A C14 DA7 3014 HETATM B C14 DA7 2 1.00 1 C 22.60 19.493 7.011 19.954 A C12 DA7 3014 HETATM B C12 DA7 2 1.00 1 C 19.78 18.440 7.706 19.242 A C11 DA7 3014 HETATM B C11 DA7 2 1.00 1 C 18.90 18.489 7.735 17.820 A C9 DA7 3014 HETATM B C9 DA7 2 1.00 1 C 21.55 17.489 8.311 17.109 A N9 DA7 3014 HETATM B N9 DA7 2 1.00 1 N 27.25 20.379 6.131 22.229 A C15 DA7 3014 HETATM B C15 DA7 2 1.00 1 C 19.70 21.364 5.625 21.687 A O15 DA7 3014 HETATM B O15 DA7 2 1.00 1 O 38.95 20.113 5.934 23.550 A N16 DA7 3014 HETATM B N16 DA7 2 1.00 1 N 29.98 21.061 5.133 24.373 A C17 DA7 3014 HETATM B C17 DA7 2 1.00 1 C 26.71 20.848 3.630 24.122 A C18 DA7 3014 HETATM B C18 DA7 2 0.50 1 C 24.39 19.390 3.297 23.936 A N19 DA7 3014 HETATM B N19 DA7 2 0.50 1 N 14.30 19.241 1.880 23.480 A C20 DA7 3014 HETATM B C20 DA7 2 0.50 1 C 29.50 18.627 3.558 25.202 A C21 DA7 3014 HETATM B C21 DA7 2 0.50 1 C 26.57 9.021 -13.845 22.131 A C8 DA7 3015 HETATM A C C8 DA7 2 0.50 1 C 26.23 8.408 -13.508 23.333 A C7 DA7 3015 HETATM A C C7 DA7 2 0.50 1 C 20.18 7.174 -12.877 23.329 A C6 DA7 3015 HETATM A C C6 DA7 2 0.50 1 C 9.85 6.602 -12.452 22.132 A C5 DA7 3015 HETATM A C C5 DA7 2 0.50 1 C 13.40 5.346 -11.852 22.172 A F DA7 3015 HETATM A C F DA7 2 0.50 1 F 14.11 6.566 -12.483 19.813 A N10 DA7 3015 HETATM A C N10 DA7 2 0.50 1 N 14.75 6.299 -12.292 17.472 A C4 DA7 3015 HETATM A C C4 DA7 2 0.50 1 C 17.95 6.840 -12.550 16.202 A C3 DA7 3015 HETATM A C C3 DA7 2 0.50 1 C 10.09 8.038 -13.211 16.059 A C2 DA7 3015 HETATM A C C2 DA7 2 0.50 1 C 12.18 8.762 -13.630 17.150 A C1 DA7 3015 HETATM A C C1 DA7 2 0.50 1 C 14.07 8.447 -13.477 20.894 A C13 DA7 3015 HETATM A C C13 DA7 2 0.50 1 C 8.93 7.168 -12.835 20.917 A C14 DA7 3015 HETATM A C C14 DA7 2 0.50 1 C 8.03 7.092 -12.671 18.613 A C12 DA7 3015 HETATM A C C12 DA7 2 0.50 1 C 15.27 8.308 -13.429 18.464 A C11 DA7 3015 HETATM A C C11 DA7 2 0.50 1 C 7.33 8.985 -13.872 19.635 A C9 DA7 3015 HETATM A C C9 DA7 2 0.50 1 C 11.23 10.204 -14.460 19.647 A N9 DA7 3015 HETATM A C N9 DA7 2 0.50 1 N 21.65 4.973 -11.506 17.651 A C15 DA7 3015 HETATM A C C15 DA7 2 0.50 1 C 11.66 4.446 -11.452 18.775 A O15 DA7 3015 HETATM A C O15 DA7 2 0.50 1 O 23.07 4.388 -10.838 16.626 A N16 DA7 3015 HETATM A C N16 DA7 2 0.50 1 N 15.30 3.098 -10.139 16.766 A C17 DA7 3015 HETATM A C C17 DA7 2 0.38 1 C 12.58 3.232 -8.620 16.917 A C18 DA7 3015 HETATM A C C18 DA7 2 0.38 1 C 10.47 4.180 -7.949 15.964 A N19 DA7 3015 HETATM A C N19 DA7 2 0.38 1 N 17.78 3.567 -7.709 14.628 A C20 DA7 3015 HETATM A C C20 DA7 2 0.38 1 C 18.80 4.763 -6.692 16.520 A C21 DA7 3015 HETATM A C C21 DA7 2 0.38 1 C 12.26 22.864 11.696 26.721 A O HOH 4001 HETATM D O HOH 3 1.00 1 O 14.55 11.846 9.857 28.011 A O HOH 4002 HETATM D O HOH 3 1.00 1 O 17.62 13.046 -5.880 7.578 A O HOH 4003 HETATM D O HOH 3 1.00 1 O 18.94 12.152 -12.662 12.695 A O HOH 4004 HETATM D O HOH 3 1.00 1 O 27.27 14.238 7.720 18.823 A O HOH 4005 HETATM D O HOH 3 1.00 1 O 23.62 19.993 8.944 29.279 A O HOH 4006 HETATM D O HOH 3 1.00 1 O 24.25 18.582 7.288 25.556 A O HOH 4007 HETATM D O HOH 3 1.00 1 O 34.18 6.804 -6.854 11.886 A O HOH 4008 HETATM D O HOH 3 1.00 1 O 39.67 6.846 -4.139 9.672 A O HOH 4009 HETATM D O HOH 3 1.00 1 O 28.39 9.626 0.373 20.932 A O HOH 4010 HETATM D O HOH 3 1.00 1 O 26.48 15.032 6.616 28.210 A O HOH 4011 HETATM D O HOH 3 1.00 1 O 25.57 17.382 8.677 29.625 A O HOH 4012 HETATM D O HOH 3 1.00 1 O 31.33 6.256 -1.190 13.542 A O HOH 4013 HETATM D O HOH 3 1.00 1 O 33.81 24.095 5.418 21.545 A O HOH 4014 HETATM D O HOH 3 1.00 1 O 22.81 9.965 -14.142 13.263 A O HOH 4015 HETATM D O HOH 3 1.00 1 O 36.58 6.683 -1.933 20.054 A O HOH 4016 HETATM D O HOH 3 1.00 1 O 34.50 6.472 0.762 17.090 A O HOH 4017 HETATM D O HOH 3 1.00 1 O 23.75 10.612 -2.634 8.554 A O HOH 4018 HETATM D O HOH 3 1.00 1 O 18.74 8.445 -0.862 7.786 A O HOH 4019 HETATM D O HOH 3 1.00 1 O 23.35 12.997 5.790 26.459 A O HOH 4020 HETATM D O HOH 3 0.50 1 O 21.35 14.069 4.801 26.499 A O HOH 4021 HETATM D O HOH 3 0.50 1 O 32.95 5.560 -4.700 13.912 A O HOH 4022 HETATM D O HOH 3 1.00 1 O 0.033178 0.019156 0.000000 0.000000 0.038311 0.000000 0.000000 0.000000 0.025381 0.000000 0.000000 0.000000 Adams, A. Guss, J.M. Collyer, C.A. Denny, W.A. Wakelin, L.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 30.140 30.140 39.400 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C18 H19 F N4 O 326.368 5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE non-polymer C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H Y 37 N C Y 38 N C Y 39 N C Y 40 N C N 41 N F Y 42 N N Y 43 N C Y 44 N C Y 45 N C Y 46 N C Y 47 N C Y 48 N C Y 49 N C Y 50 N C Y 51 N C N 52 N N N 53 N C N 54 N O N 55 N N N 56 N C N 57 N C N 58 N N N 59 N C N 60 N C N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N O N 81 N P N 82 N O N 83 N O N 84 N O N 85 N C N 86 R C N 87 N O N 88 S C N 89 N O N 90 N C N 91 R C N 92 N N N 93 N C N 94 N O N 95 N N N 96 N C N 97 N N N 98 N C N 99 N C N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N O N 115 N P N 116 N O N 117 N O N 118 N O N 119 N C N 120 R C N 121 N O N 122 S C N 123 N O N 124 N C N 125 R C Y 126 N N Y 127 N C Y 128 N N Y 129 N C N 130 N C N 131 N O N 132 N N N 133 N C N 134 N N N 135 N N Y 136 N C N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N O N 152 N P N 153 N O N 154 N O N 155 N O N 156 N C N 157 R C N 158 N O N 159 S C N 160 N O N 161 N C N 162 R C N 163 N N N 164 N C N 165 N O N 166 N N N 167 N C N 168 N O N 169 N C N 170 N C N 171 N C N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N O N 188 N H N 189 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing Y 39 N doub Y 40 N sing N 41 N sing Y 42 N sing N 43 N sing Y 44 N doub N 45 N sing N 46 N sing Y 47 N sing Y 48 N doub Y 49 N sing Y 50 N doub Y 51 N sing N 52 N sing Y 53 N sing N 54 N sing Y 55 N doub N 56 N sing Y 57 N sing N 58 N sing Y 59 N sing Y 60 N doub Y 61 N doub Y 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N doub N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N doub N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing Y 142 N sing Y 143 N sing Y 144 N doub N 145 N sing Y 146 N sing N 147 N sing Y 148 N doub N 149 N doub N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N doub N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N doub N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing US Mol.Pharmacol. MOPMA3 0197 0026-895X 58 649 658 10953060 Acridinecarboxamide topoisomerase poisons: structural and kinetic studies of the DNA complexes of 5-substituted 9-amino-(N-(2-dimethylamino)ethyl)acridine-4-carboxamides. 2000 10.2210/pdb1dl8/pdb pdb_00001dl8 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 IMAGE PLATE 1998-03-20 RIGAKU RAXIS II SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 1809.217 DNA (5'-D(*CP*GP*TP*AP*CP*G)-3') 1 syn polymer 326.368 5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE 2 syn non-polymer 18.015 water 22 nat water no no (DC)(DG)(DT)(DA)(DC)(DG) CGTACG A polydeoxyribonucleotide n n n n n n 1 2.83 56.6 VAPOR DIFFUSION 6.5 MPD, SODIUM CACODYLATE, SPERMINE, NACL, MGCL2, pH 6.5, VAPOR DIFFUSION, temperature 291K 291 SODIUM CACODYLATE 1 SPERMINE 1 NACL 1 MGCL2 1 MPD 1 MPD 2 1.581 1 19 A 1001 A 1006 -3.193 A_DC1001:DG1006_A 1 -9.249 0.190 0.074 -0.197 -6.807 1 19 A 1002 A 1005 -1.274 A_DG1002:DC1005_A 2 -5.881 -0.087 0.031 -0.136 1.247 1 20 A 1003 A 1004 -3.376 A_DT1003:DA1004_A 3 -9.650 0.040 0.107 -0.209 -1.247 1 20 A 1004 A 1003 -3.376 A_DA1004:DT1003_A 4 -9.650 -0.040 0.107 -0.209 6.807 1 19 A 1005 A 1002 -1.274 A_DC1005:DG1002_A 5 -5.881 0.087 0.031 -0.136 -1.581 1 19 A 1006 A 1001 -3.193 A_DG1006:DC1001_A 6 -9.249 -0.190 0.074 -0.197 6.834 24.784 A A 1001 1002 9.693 A A 1006 1005 6.846 4.141 0.351 0.451 AA_DC1001DG1002:DC1005DG1006_AA 1 0.772 -1.806 24.429 -1.589 -0.325 3.200 26.599 A A 1002 1003 5.150 A A 1005 1004 3.197 2.366 -0.459 0.056 AA_DG1002DT1003:DA1004DC1005_AA 2 -0.643 1.399 26.488 -0.486 0.833 3.112 48.743 A A 1003 1004 -4.453 A A 1004 1003 3.233 -3.672 0.000 1.596 AA_DT1003DA1004:DT1003DA1004_AA 3 0.000 0.000 48.612 2.207 0.000 3.200 26.599 A A 1004 1005 5.150 A A 1003 1002 3.197 2.366 0.459 0.056 AA_DA1004DC1005:DG1002DT1003_AA 4 0.643 -1.399 26.488 -0.486 -0.833 6.834 24.784 A A 1005 1006 9.693 A A 1002 1001 6.846 4.141 -0.351 0.451 AA_DC1005DG1006:DC1001DG1002_AA 5 -0.772 1.806 24.429 -1.590 0.325 chem_comp_atom chem_comp_bond database_2 struct_site pdbx_initial_refinement_model repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Refinement description 1 0 2000-10-30 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 1 4 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id 9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2 6-BR-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CG(5-BRU)ACG)2 RCSB Y RCSB 1999-12-08 REL REL DA7 5-FLUORO-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE HOH water 465D NDB ID DD0015 PDB experimental model DA7 3014 2 DA7 DA7 3014 A DA7 3015 2 DA7 DA7 3015 A HOH 4001 3 HOH HOH 4001 A HOH 4002 3 HOH HOH 4002 A HOH 4003 3 HOH HOH 4003 A HOH 4004 3 HOH HOH 4004 A HOH 4005 3 HOH HOH 4005 A HOH 4006 3 HOH HOH 4006 A HOH 4007 3 HOH HOH 4007 A HOH 4008 3 HOH HOH 4008 A HOH 4009 3 HOH HOH 4009 A HOH 4010 3 HOH HOH 4010 A HOH 4011 3 HOH HOH 4011 A HOH 4012 3 HOH HOH 4012 A HOH 4013 3 HOH HOH 4013 A HOH 4014 3 HOH HOH 4014 A HOH 4015 3 HOH HOH 4015 A HOH 4016 3 HOH HOH 4016 A HOH 4017 3 HOH HOH 4017 A HOH 4018 3 HOH HOH 4018 A HOH 4019 3 HOH HOH 4019 A HOH 4020 3 HOH HOH 4020 A HOH 4021 3 HOH HOH 4021 A HOH 4022 3 HOH HOH 4022 A C 1001 n 1 DC 1001 A G 1002 n 2 DG 1002 A T 1003 n 3 DT 1003 A A 1004 n 4 DA 1004 A C 1005 n 5 DC 1005 A G 1006 n 6 DG 1006 A 0.2089000 0.2072000 0.2615000 227 8.3 2720 author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_655 -x+1,-y,z crystal symmetry operation 30.1400000000 0.0000000000 0.0000000000 1 -6.10 0.80 109.40 103.30 A A A O5' C5' C4' DC DC DC 1001 1001 1001 N 1 6.40 0.60 106.00 112.40 A A A O4' C4' C3' DC DC DC 1001 1001 1001 N 1 -8.81 0.70 102.20 93.39 A A A C4' C3' C2' DC DC DC 1001 1001 1001 N 1 -5.89 0.80 105.90 100.01 A A A O4' C1' C2' DC DC DC 1001 1001 1001 N 1 12.30 1.40 114.30 126.60 A A A N1 C1' C2' DC DC DC 1001 1001 1001 N 1 -5.44 0.80 109.40 103.96 A A A O5' C5' C4' DG DG DG 1002 1002 1002 N 1 4.89 0.60 106.00 110.89 A A A O4' C4' C3' DG DG DG 1002 1002 1002 N 1 -7.60 0.70 102.20 94.60 A A A C4' C3' C2' DG DG DG 1002 1002 1002 N 1 -6.36 0.80 105.90 99.54 A A A O4' C1' C2' DG DG DG 1002 1002 1002 N 1 -7.79 0.70 108.00 100.21 A A A O4' C1' N9 DG DG DG 1002 1002 1002 N 1 -4.38 0.60 125.10 120.72 A A A C6 N1 C2 DG DG DG 1002 1002 1002 N 1 -8.45 1.20 119.70 111.25 A A A C3' O3' P DG DG DT 1002 1002 1003 Y 1 -11.28 0.80 109.40 98.12 A A A O5' C5' C4' DT DT DT 1003 1003 1003 N 1 6.32 0.60 106.00 112.32 A A A O4' C4' C3' DT DT DT 1003 1003 1003 N 1 -5.20 0.70 102.20 97.00 A A A C4' C3' C2' DT DT DT 1003 1003 1003 N 1 -7.60 0.80 105.90 98.30 A A A O4' C1' C2' DT DT DT 1003 1003 1003 N 1 4.06 0.60 127.20 131.26 A A A C2 N3 C4 DT DT DT 1003 1003 1003 N 1 5.33 0.60 122.30 127.63 A A A N3 C2 O2 DT DT DT 1003 1003 1003 N 1 -8.19 0.80 109.40 101.21 A A A O5' C5' C4' DA DA DA 1004 1004 1004 N 1 8.41 0.60 106.00 114.41 A A A O4' C4' C3' DA DA DA 1004 1004 1004 N 1 -5.44 0.70 102.20 96.76 A A A C4' C3' C2' DA DA DA 1004 1004 1004 N 1 -5.44 0.80 105.90 100.46 A A A O4' C1' C2' DA DA DA 1004 1004 1004 N 1 -8.04 0.70 108.00 99.96 A A A O4' C1' N9 DA DA DA 1004 1004 1004 N 1 -3.15 0.50 113.80 110.65 A A A N7 C8 N9 DA DA DA 1004 1004 1004 N 1 -7.42 0.80 109.40 101.98 A A A O5' C5' C4' DC DC DC 1005 1005 1005 N 1 6.74 0.60 106.00 112.74 A A A O4' C4' C3' DC DC DC 1005 1005 1005 N 1 -4.84 0.70 102.20 97.36 A A A C4' C3' C2' DC DC DC 1005 1005 1005 N 1 -7.96 0.80 105.90 97.94 A A A O4' C1' C2' DC DC DC 1005 1005 1005 N 1 4.59 0.30 108.30 112.89 A A A O4' C1' N1 DC DC DC 1005 1005 1005 N 1 5.41 0.40 120.30 125.71 A A A C6 N1 C2 DC DC DC 1005 1005 1005 N 1 4.31 0.40 121.90 126.21 A A A N3 C4 C5 DC DC DC 1005 1005 1005 N 1 -4.36 0.50 121.00 116.64 A A A C5 C6 N1 DC DC DC 1005 1005 1005 N 1 -5.16 0.70 120.20 115.04 A A A C5 C4 N4 DC DC DC 1005 1005 1005 N 1 -5.03 0.80 109.40 104.37 A A A O5' C5' C4' DG DG DG 1006 1006 1006 N 1 -12.26 1.60 120.90 108.64 A A A P O5' C5' DG DG DG 1006 1006 1006 N 1 5.85 0.60 106.00 111.85 A A A O4' C4' C3' DG DG DG 1006 1006 1006 N 1 -5.71 0.70 102.20 96.49 A A A C4' C3' C2' DG DG DG 1006 1006 1006 N 1 A A C5' C4' DC DC 1001 1001 0.086 0.007 1.512 1.598 N 1 A A C3' C2' DC DC 1001 1001 0.094 0.012 1.518 1.612 N 1 A A O4' C1' DC DC 1001 1001 0.129 0.011 1.420 1.549 N 1 A A C5' C4' DG DG 1002 1002 0.107 0.007 1.512 1.619 N 1 A A C3' C2' DG DG 1002 1002 0.079 0.012 1.518 1.597 N 1 A A C2' C1' DG DG 1002 1002 0.071 0.010 1.519 1.590 N 1 A A O4' C1' DG DG 1002 1002 0.114 0.011 1.420 1.534 N 1 A A C5' C4' DT DT 1003 1003 0.111 0.007 1.512 1.623 N 1 A A C2' C1' DT DT 1003 1003 0.075 0.010 1.519 1.594 N 1 A A O4' C1' DT DT 1003 1003 0.124 0.011 1.420 1.544 N 1 A A C5' C4' DA DA 1004 1004 0.115 0.007 1.512 1.627 N 1 A A O4' C1' DA DA 1004 1004 0.114 0.011 1.420 1.534 N 1 A A C5' C4' DC DC 1005 1005 0.108 0.007 1.512 1.620 N 1 A A C3' C2' DC DC 1005 1005 0.076 0.012 1.518 1.594 N 1 A A C2' C1' DC DC 1005 1005 0.091 0.010 1.519 1.610 N 1 A A O4' C1' DC DC 1005 1005 0.090 0.011 1.420 1.510 N 1 A A C5' C4' DG DG 1006 1006 0.120 0.007 1.512 1.632 N 1 A A C3' C2' DG DG 1006 1006 0.072 0.012 1.518 1.590 N 1 A A O4' C1' DG DG 1006 1006 0.104 0.011 1.420 1.524 N 0.2694000 0.2139000 0.2159000 0.2139000 1.55 16.0 755 248 2978 2978 1032 8.3 99.3 RANDOM 1 FREE R 0.0 0.0 NDB ID DD0015 MOEWS & KRETSINGER: J.MOL.BIOL. 91(1973) 201-228 1 174.38 1.55 16.0 22 190 48 120 0 0.012 0.021 14.03 1.55 50 1DL8 3022 3006 0.0 0.0 0.0550000 1 36.6 9.6 99.5 0.2430000 1.55 1.61 3.4 97.3 refinement SHELXL-97 data reduction DENZO data scaling SCALEPACK CRYSTAL STRUCTURE OF 5-F-9-AMINO-(N-(2-DIMETHYLAMINO)ETHYL)ACRIDINE-4-CARBOXAMIDE BOUND TO D(CGTACG)2 1 N N 2 N N 2 N N 3 N N hydrog WATSON-CRICK A DC 1001 A N3 DC 1 1_555 A DG 1006 A N1 DG 6 4_655 hydrog WATSON-CRICK A DC 1001 A N4 DC 1 1_555 A DG 1006 A O6 DG 6 4_655 hydrog WATSON-CRICK A DC 1001 A O2 DC 1 1_555 A DG 1006 A N2 DG 6 4_655 hydrog WATSON-CRICK A DG 1002 A N1 DG 2 1_555 A DC 1005 A N3 DC 5 4_655 hydrog WATSON-CRICK A DG 1002 A N2 DG 2 1_555 A DC 1005 A O2 DC 5 4_655 hydrog WATSON-CRICK A DG 1002 A O6 DG 2 1_555 A DC 1005 A N4 DC 5 4_655 hydrog WATSON-CRICK A DT 1003 A N3 DT 3 1_555 A DA 1004 A N1 DA 4 4_655 hydrog WATSON-CRICK A DT 1003 A O4 DT 3 1_555 A DA 1004 A N6 DA 4 4_655 hydrog WATSON-CRICK A DA 1004 A N1 DA 4 1_555 A DT 1003 A N3 DT 3 4_655 hydrog WATSON-CRICK A DA 1004 A N6 DA 4 1_555 A DT 1003 A O4 DT 3 4_655 hydrog WATSON-CRICK A DC 1005 A N3 DC 5 1_555 A DG 1002 A N1 DG 2 4_655 hydrog WATSON-CRICK A DC 1005 A N4 DC 5 1_555 A DG 1002 A O6 DG 2 4_655 hydrog WATSON-CRICK A DC 1005 A O2 DC 5 1_555 A DG 1002 A N2 DG 2 4_655 hydrog WATSON-CRICK A DG 1006 A N1 DG 6 1_555 A DC 1001 A N3 DC 1 4_655 hydrog WATSON-CRICK A DG 1006 A N2 DG 6 1_555 A DC 1001 A O2 DC 1 4_655 hydrog WATSON-CRICK A DG 1006 A O6 DG 6 1_555 A DC 1001 A N4 DC 1 4_655 DNA INTERCALATION, DNA, ACRIDINE 1DL8 PDB 1 1DL8 1001 1006 1DL8 1001 1006 1DL8 A 1 1 6 BINDING SITE FOR RESIDUE DA7 A 3014 A DA7 3014 Software 10 BINDING SITE FOR RESIDUE DA7 A 3015 A DA7 3015 Software 8 A DC 1001 A DC 1 10 1_555 A DG 1002 A DG 2 10 1_555 A DG 1002 A DG 2 10 3_664 A DA 1004 A DA 4 10 2_655 A DA 1004 A DA 4 10 4_655 A DC 1005 A DC 5 10 4_655 A DG 1006 A DG 6 10 4_655 A DA7 3015 C DA7 10 4_655 A HOH 4007 D HOH 10 1_555 A HOH 4014 D HOH 10 1_555 A DC 1001 A DC 1 8 1_445 A DC 1001 A DC 1 8 4_655 A DC 1005 A DC 5 8 5_555 A DG 1006 A DG 6 8 1_555 A DG 1006 A DG 6 8 4_545 A DA7 3014 B DA7 8 4_655 A HOH 4018 D HOH 8 2_545 A HOH 4018 D HOH 8 5_555 172 hexagonal P 64