1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Balashova, T.A.
Shenkarev, Z.O.
Tagaev, A.A.
Ovchinnikova, T.V.
Raap, J.
Arseniev, A.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C4 H9 N O2
103.120
n
ALPHA-AMINOISOBUTYRIC ACID
L-peptide linking
C5 H11 N O2
117.146
D-ISOVALINE
D-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O3
131.130
n
4-HYDROXYPROLINE
HYDROXYPROLINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C9 H13 N O
151.206
n
L-PHENYLALANINOL
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
NE
FEBS Lett.
FEBLAL
0165
0014-5793
466
333
10.1016/S0014-5793(99)01707-X
10682854
NMR Structure of the Channel-Former Zervamicin Iib in Isotropic Solvents.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1823.183
ZERVAMICIN IIB
1
nat
polymer
no
yes
(ACE)WIQ(DIV)IT(AIB)L(AIB)(HYP)Q(AIB)(HYP)(AIB)P(PHL)
XWIQVITALAPQAPAPF
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
118885
EMERICELLOPSIS SALMOSYNNEMATA
repository
Initial release
Version format compliance
Version format compliance
Atomic model
Database references
Derived calculations
Non-polymer description
Structure summary
Other
1
0
2000-02-03
1
1
2011-06-14
1
2
2011-07-13
1
3
2011-07-27
1
4
2012-12-12
CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E
SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL
SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB BOUND TO DPC MICELLES
SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I
CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN
SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES
CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C
CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B
CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A
RCSB
Y
RCSB
1999-12-13
REL
REL
ZERVAMICIN IIB IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL
FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES.
HERE, ZERVAMICIN IS REPRESENTED BY THE SEQUENCE (SEQRES)
Antibiotic
ZERVAMICIN IS A HEXADECAMERIC HELICAL PEPTIDE.
THE N-TERM IS ACETYLATED (RESIDUE 0)
Zervamicin IIB
Peptaibol
NOESY SPECTRUM 200MS, WE DETERMINED N15HB CONSTANT FROM NOESY SPECTRA (N15 ENRICHED SAMPLE)
BEST 20 OUT OF 100 WITH CA BACKBONE RMSD NO LESS THAN 0.05 ANGSTROMS
100
20
2D NOESY
DQF-COSY
2D TOCSY
0
5.8
1
atm
303
K
0
5.8
1
atm
303
K
335 NOESY PEAKS, 129 UPPER CONSTRAINTS, 19 ADDITIONAL LOWER CONSTRAINTS, 48 ADDITIONAL CONSTRAINTS FOR HYDROGEN BONDS, 12 ANGLE CONSTRAINTS
simulated annealing
10MM ZERVAMICIN IIB
3MM ZERVAMICIN IIB, UNIFORM LABELING WITH 15N
INSIGHT II/95
refinement
DISCOVER 3.1
structure solution
DYANA 1.5
600
Varian
UNITY
ACE
0
n
1
ACE
0
A
TRP
1
n
2
TRP
1
A
ILE
2
n
3
ILE
2
A
GLN
3
n
4
GLN
3
A
DIV
4
n
5
DIV
4
A
ILE
5
n
6
ILE
5
A
THR
6
n
7
THR
6
A
AIB
7
n
8
AIB
7
A
LEU
8
n
9
LEU
8
A
AIB
9
n
10
AIB
9
A
HYP
10
n
11
HYP
10
A
GLN
11
n
12
GLN
11
A
AIB
12
n
13
AIB
12
A
HYP
13
n
14
HYP
13
A
AIB
14
n
15
AIB
14
A
PRO
15
n
16
PRO
15
A
PHL
16
n
17
PHL
16
A
software_defined_assembly
PQS
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
ZERVAMICIN IIB
SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)
1
N
N
A
TRP
1
A
TRP
2
HELX_P
A
HYP
10
A
HYP
11
1
1
10
covale
1.342
A
ACE
0
A
C
ACE
1
1_555
A
TRP
1
A
N
TRP
2
1_555
covale
1.358
A
GLN
3
A
C
GLN
4
1_555
A
DIV
4
A
N
DIV
5
1_555
covale
1.362
A
DIV
4
A
C
DIV
5
1_555
A
ILE
5
A
N
ILE
6
1_555
covale
1.352
A
THR
6
A
C
THR
7
1_555
A
AIB
7
A
N
AIB
8
1_555
covale
1.360
A
AIB
7
A
C
AIB
8
1_555
A
LEU
8
A
N
LEU
9
1_555
covale
1.360
A
LEU
8
A
C
LEU
9
1_555
A
AIB
9
A
N
AIB
10
1_555
covale
1.376
A
AIB
9
A
C
AIB
10
1_555
A
HYP
10
A
N
HYP
11
1_555
covale
1.347
A
HYP
10
A
C
HYP
11
1_555
A
GLN
11
A
N
GLN
12
1_555
covale
1.367
A
GLN
11
A
C
GLN
12
1_555
A
AIB
12
A
N
AIB
13
1_555
covale
1.380
A
AIB
12
A
C
AIB
13
1_555
A
HYP
13
A
N
HYP
14
1_555
covale
1.359
A
HYP
13
A
C
HYP
14
1_555
A
AIB
14
A
N
AIB
15
1_555
covale
1.374
A
AIB
14
A
C
AIB
15
1_555
A
PRO
15
A
N
PRO
16
1_555
covale
1.354
A
PRO
15
A
C
PRO
16
1_555
A
PHL
16
A
N
PHL
17
1_555
ANTIBIOTIC
ZREVAMICIN, PEPTAIBOL, ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC, BENT HELIX
NOR01092
NOR
1
NOR01092
0
16
1DLZ
0
16
NOR01092
A
1
1
17
1
P 1