1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Balashova, T.A. Shenkarev, Z.O. Tagaev, A.A. Ovchinnikova, T.V. Raap, J. Arseniev, A.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C2 H4 O 44.053 ACETYL GROUP non-polymer C4 H9 N O2 103.120 n ALPHA-AMINOISOBUTYRIC ACID L-peptide linking C5 H11 N O2 117.146 D-ISOVALINE D-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O3 131.130 n 4-HYDROXYPROLINE HYDROXYPROLINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C9 H13 N O 151.206 n L-PHENYLALANINOL L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking NE FEBS Lett. FEBLAL 0165 0014-5793 466 333 10.1016/S0014-5793(99)01707-X 10682854 NMR Structure of the Channel-Former Zervamicin Iib in Isotropic Solvents. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1823.183 ZERVAMICIN IIB 1 nat polymer no yes (ACE)WIQ(DIV)IT(AIB)L(AIB)(HYP)Q(AIB)(HYP)(AIB)P(PHL) XWIQVITALAPQAPAPF A polypeptide(L) n n n n n n n n n n n n n n n n n sample 118885 EMERICELLOPSIS SALMOSYNNEMATA repository Initial release Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other 1 0 2000-02-03 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-12-12 CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB BOUND TO DPC MICELLES SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL C CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A RCSB Y RCSB 1999-12-13 REL REL ZERVAMICIN IIB IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES. HERE, ZERVAMICIN IS REPRESENTED BY THE SEQUENCE (SEQRES) Antibiotic ZERVAMICIN IS A HEXADECAMERIC HELICAL PEPTIDE. THE N-TERM IS ACETYLATED (RESIDUE 0) Zervamicin IIB Peptaibol NOESY SPECTRUM 200MS, WE DETERMINED N15HB CONSTANT FROM NOESY SPECTRA (N15 ENRICHED SAMPLE) BEST 20 OUT OF 100 WITH CA BACKBONE RMSD NO LESS THAN 0.05 ANGSTROMS 100 20 2D NOESY DQF-COSY 2D TOCSY 0 5.8 1 atm 303 K 0 5.8 1 atm 303 K 335 NOESY PEAKS, 129 UPPER CONSTRAINTS, 19 ADDITIONAL LOWER CONSTRAINTS, 48 ADDITIONAL CONSTRAINTS FOR HYDROGEN BONDS, 12 ANGLE CONSTRAINTS simulated annealing 10MM ZERVAMICIN IIB 3MM ZERVAMICIN IIB, UNIFORM LABELING WITH 15N INSIGHT II/95 refinement DISCOVER 3.1 structure solution DYANA 1.5 600 Varian UNITY ACE 0 n 1 ACE 0 A TRP 1 n 2 TRP 1 A ILE 2 n 3 ILE 2 A GLN 3 n 4 GLN 3 A DIV 4 n 5 DIV 4 A ILE 5 n 6 ILE 5 A THR 6 n 7 THR 6 A AIB 7 n 8 AIB 7 A LEU 8 n 9 LEU 8 A AIB 9 n 10 AIB 9 A HYP 10 n 11 HYP 10 A GLN 11 n 12 GLN 11 A AIB 12 n 13 AIB 12 A HYP 13 n 14 HYP 13 A AIB 14 n 15 AIB 14 A PRO 15 n 16 PRO 15 A PHL 16 n 17 PHL 16 A software_defined_assembly PQS 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 ZERVAMICIN IIB SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC) 1 N N A TRP 1 A TRP 2 HELX_P A HYP 10 A HYP 11 1 1 10 covale 1.342 A ACE 0 A C ACE 1 1_555 A TRP 1 A N TRP 2 1_555 covale 1.358 A GLN 3 A C GLN 4 1_555 A DIV 4 A N DIV 5 1_555 covale 1.362 A DIV 4 A C DIV 5 1_555 A ILE 5 A N ILE 6 1_555 covale 1.352 A THR 6 A C THR 7 1_555 A AIB 7 A N AIB 8 1_555 covale 1.360 A AIB 7 A C AIB 8 1_555 A LEU 8 A N LEU 9 1_555 covale 1.360 A LEU 8 A C LEU 9 1_555 A AIB 9 A N AIB 10 1_555 covale 1.376 A AIB 9 A C AIB 10 1_555 A HYP 10 A N HYP 11 1_555 covale 1.347 A HYP 10 A C HYP 11 1_555 A GLN 11 A N GLN 12 1_555 covale 1.367 A GLN 11 A C GLN 12 1_555 A AIB 12 A N AIB 13 1_555 covale 1.380 A AIB 12 A C AIB 13 1_555 A HYP 13 A N HYP 14 1_555 covale 1.359 A HYP 13 A C HYP 14 1_555 A AIB 14 A N AIB 15 1_555 covale 1.374 A AIB 14 A C AIB 15 1_555 A PRO 15 A N PRO 16 1_555 covale 1.354 A PRO 15 A C PRO 16 1_555 A PHL 16 A N PHL 17 1_555 ANTIBIOTIC ZREVAMICIN, PEPTAIBOL, ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC, BENT HELIX NOR01092 NOR 1 NOR01092 0 16 1DLZ 0 16 NOR01092 A 1 1 17 1 P 1