0.055772 0.000000 0.000000 0.000000 0.032436 0.000000 0.000000 0.000000 0.022356 0.00000 0.00000 0.00000 Chevrier, B. Dock, A.C. Hartmann, B. Leng, M. Moras, D. Thuong, M.T. Westhof, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 17.930 30.830 44.730 C9 H13 Br N3 O7 P 386.093 n 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer N 1 N BR N 2 N P N 3 N O N 4 N O N 5 N O N 6 N N N 7 N C N 8 N C N 9 N O N 10 N N N 11 N C N 12 N N N 13 N C N 14 N C N 15 N C N 16 R C N 17 N O N 18 R C N 19 S C N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N O N 36 N P N 37 N O N 38 N O N 39 N O N 40 N C N 41 R C N 42 N O N 43 S C N 44 N O N 45 N C N 46 R C Y 47 N N Y 48 N C Y 49 N N Y 50 N C N 51 N C N 52 N O N 53 N N N 54 N C N 55 N N N 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N H N 74 N H N 1 N sing N 2 N doub N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N doub N 12 N sing N 13 N doub N 14 N sing N 15 N doub N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing Y 59 N sing Y 60 N sing Y 61 N doub N 62 N sing Y 63 N sing N 64 N sing Y 65 N doub N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing UK J.Mol.Biol. JMOBAK 0070 0022-2836 188 707 719 10.1016/S0022-2836(86)80016-X 3735433 Solvation of the left-handed hexamer d(5BrC-G-5BrC-G-5 BrC-G) in crystals grown at two temperatures. 1986 10.2210/pdb1dn5/pdb pdb_00001dn5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 310.00 1 DIFFRACTOMETER ENRAF-NONIUS CAD4 x-ray 1 1.0 2046.893 DNA (5'-D(*(CBR)P*GP*(CBR)P*GP*(CBR)P*G)-3') 2 syn polymer 18.015 water 83 nat water no yes (CBR)(DG)(CBR)(DG)(CBR)(DG) CGCGCG A,B polydeoxyribonucleotide n n n n n n 1.51 18.54 VAPOR DIFFUSION VAPOR DIFFUSION, temperature 310.00K 291.15 WATER 1 MPD 1 NA CACODYLATE 1 NACL 1 WATER 2 MPD 2 9.176 1 19 A 1 B 12 -1.751 A_CBR1:DG12_B 1 -0.754 -0.319 -0.027 -0.051 -5.689 1 19 A 2 B 11 4.124 A_DG2:CBR11_B 2 0.059 0.313 0.141 -0.233 4.494 1 19 A 3 B 10 1.844 A_CBR3:DG10_B 3 -5.463 -0.449 -0.136 -0.150 -5.380 1 19 A 4 B 9 -0.286 A_DG4:CBR9_B 4 -3.265 0.306 0.045 -0.168 6.967 1 19 A 5 B 8 1.357 A_CBR5:DG8_B 5 -1.518 -0.363 -0.006 -0.138 -3.357 1 19 A 6 B 7 1.499 A_DG6:CBR7_B 6 -0.705 0.211 0.060 -0.114 2.766 -10.323 A A 1 2 -10.888 B B 12 11 3.942 1.946 0.207 5.904 AA_CBR1DG2:CBR11DG12_BB 1 -0.519 -2.902 -10.125 -36.353 0.208 3.241 -50.145 A A 2 3 4.551 B B 11 10 3.320 -3.853 -0.061 -0.994 AA_DG2CBR3:DG10CBR11_BB 2 1.433 1.692 -49.987 1.452 0.031 5.842 -8.794 A A 3 4 31.847 B B 10 9 3.683 -4.605 -0.165 5.379 AA_CBR3DG4:CBR9DG10_BB 3 -1.673 -11.571 -7.305 -17.338 -7.520 3.122 -49.387 A A 4 5 5.492 B B 9 8 3.242 -4.583 -0.156 -1.265 AA_DG4CBR5:DG8CBR9_BB 4 0.823 0.987 -49.181 1.847 -0.128 3.779 -12.012 A A 5 6 -0.470 B B 8 7 3.827 0.098 0.190 5.644 AA_CBR5DG6:CBR7DG8_BB 5 0.124 0.591 -12.011 -27.122 1.092 exptl_crystal_grow diffrn_detector chem_comp_atom chem_comp_bond database_2 struct_conn repository Initial release Version format compliance Version format compliance Experimental preparation Data collection Data collection Database references Derived calculations 1 0 1987-04-16 1 1 2008-05-22 1 2 2011-07-13 1 3 2018-01-24 1 4 2018-04-18 1 5 2024-02-07 _exptl_crystal_grow.temp _diffrn_detector.detector _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag BNL Y BNL 1986-12-01 REL REL HOH water HOH 13 2 HOH HOH 13 A HOH 15 2 HOH HOH 15 A HOH 17 2 HOH HOH 17 A HOH 18 2 HOH HOH 18 A HOH 19 2 HOH HOH 19 A HOH 22 2 HOH HOH 22 A HOH 23 2 HOH HOH 23 A HOH 25 2 HOH HOH 25 A HOH 32 2 HOH HOH 32 A HOH 35 2 HOH HOH 35 A HOH 38 2 HOH HOH 38 A HOH 39 2 HOH HOH 39 A HOH 40 2 HOH HOH 40 A HOH 41 2 HOH HOH 41 A HOH 42 2 HOH HOH 42 A HOH 45 2 HOH HOH 45 A HOH 47 2 HOH HOH 47 A HOH 48 2 HOH HOH 48 A HOH 51 2 HOH HOH 51 A HOH 52 2 HOH HOH 52 A HOH 53 2 HOH HOH 53 A HOH 54 2 HOH HOH 54 A HOH 56 2 HOH HOH 56 A HOH 57 2 HOH HOH 57 A HOH 58 2 HOH HOH 58 A HOH 60 2 HOH HOH 60 A HOH 62 2 HOH HOH 62 A HOH 64 2 HOH HOH 64 A HOH 65 2 HOH HOH 65 A HOH 66 2 HOH HOH 66 A HOH 69 2 HOH HOH 69 A HOH 72 2 HOH HOH 72 A HOH 73 2 HOH HOH 73 A HOH 75 2 HOH HOH 75 A HOH 77 2 HOH HOH 77 A HOH 79 2 HOH HOH 79 A HOH 81 2 HOH HOH 81 A HOH 82 2 HOH HOH 82 A HOH 83 2 HOH HOH 83 A HOH 84 2 HOH HOH 84 A HOH 85 2 HOH HOH 85 A HOH 86 2 HOH HOH 86 A HOH 87 2 HOH HOH 87 A HOH 88 2 HOH HOH 88 A HOH 89 2 HOH HOH 89 A HOH 90 2 HOH HOH 90 A HOH 91 2 HOH HOH 91 A HOH 92 2 HOH HOH 92 A HOH 94 2 HOH HOH 94 A HOH 95 2 HOH HOH 95 A HOH 14 2 HOH HOH 14 B HOH 16 2 HOH HOH 16 B HOH 20 2 HOH HOH 20 B HOH 21 2 HOH HOH 21 B HOH 24 2 HOH HOH 24 B HOH 26 2 HOH HOH 26 B HOH 27 2 HOH HOH 27 B HOH 28 2 HOH HOH 28 B HOH 29 2 HOH HOH 29 B HOH 30 2 HOH HOH 30 B HOH 31 2 HOH HOH 31 B HOH 33 2 HOH HOH 33 B HOH 34 2 HOH HOH 34 B HOH 36 2 HOH HOH 36 B HOH 37 2 HOH HOH 37 B HOH 43 2 HOH HOH 43 B HOH 44 2 HOH HOH 44 B HOH 46 2 HOH HOH 46 B HOH 49 2 HOH HOH 49 B HOH 50 2 HOH HOH 50 B HOH 55 2 HOH HOH 55 B HOH 59 2 HOH HOH 59 B HOH 61 2 HOH HOH 61 B HOH 63 2 HOH HOH 63 B HOH 67 2 HOH HOH 67 B HOH 68 2 HOH HOH 68 B HOH 70 2 HOH HOH 70 B HOH 71 2 HOH HOH 71 B HOH 74 2 HOH HOH 74 B HOH 76 2 HOH HOH 76 B HOH 78 2 HOH HOH 78 B HOH 80 2 HOH HOH 80 B HOH 93 2 HOH HOH 93 B C 1 n 1 CBR 1 A G 2 n 2 DG 2 A C 3 n 3 CBR 3 A G 4 n 4 DG 4 A C 5 n 5 CBR 5 A G 6 n 6 DG 6 A C 7 n 1 CBR 7 B G 8 n 2 DG 8 B C 9 n 3 CBR 9 B G 10 n 4 DG 10 B C 11 n 5 CBR 11 B G 12 n 6 DG 12 B author_defined_assembly 2 dimeric A CBR 1 A CBR 1 DC A CBR 3 A CBR 3 DC A CBR 5 A CBR 5 DC B CBR 7 B CBR 1 DC B CBR 9 B CBR 3 DC B CBR 11 B CBR 5 DC 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -5.78 0.90 105.70 99.92 A A A O5' P OP1 DG DG DG 2 2 2 N 1 -4.09 0.60 125.10 121.01 A A A C6 N1 C2 DG DG DG 2 2 2 N 1 4.91 0.50 111.50 116.41 A A A C5 C6 N1 DG DG DG 2 2 2 N 1 11.22 1.50 119.60 130.82 A A A OP1 P OP2 DG DG DG 4 4 4 N 1 3.17 0.50 106.80 109.97 A A A O4' C1' C2' DG DG DG 4 4 4 N 1 -4.66 0.70 108.00 103.34 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 -3.84 0.60 123.90 120.06 A A A N1 C2 N3 DG DG DG 4 4 4 N 1 3.86 0.50 111.50 115.36 A A A C5 C6 N1 DG DG DG 4 4 4 N 1 -8.18 1.30 127.00 118.82 A A A C8 N9 C1' DG DG DG 4 4 4 N 1 11.28 1.50 119.60 130.88 A A A OP1 P OP2 DG DG DG 6 6 6 N 1 -6.51 0.90 105.70 99.19 A A A O5' P OP2 DG DG DG 6 6 6 N 1 -4.62 0.60 125.10 120.48 A A A C6 N1 C2 DG DG DG 6 6 6 N 1 3.68 0.60 123.90 127.58 A A A N1 C2 N3 DG DG DG 6 6 6 N 1 -3.02 0.50 104.30 101.28 A A A C5 N7 C8 DG DG DG 6 6 6 N 1 10.71 1.20 110.70 121.41 B B B O5' P OP2 DG DG DG 8 8 8 N 1 11.71 1.50 119.60 131.31 B B B OP1 P OP2 DG DG DG 10 10 10 N 1 -6.20 0.90 105.70 99.50 B B B O5' P OP2 DG DG DG 10 10 10 N 1 -4.92 0.80 109.40 104.48 B B B O5' C5' C4' DG DG DG 10 10 10 N 1 4.19 0.60 123.90 128.09 B B B N1 C2 N3 DG DG DG 10 10 10 N 1 -5.57 0.50 111.90 106.33 B B B C2 N3 C4 DG DG DG 10 10 10 N 1 3.14 0.50 113.10 116.24 B B B N7 C8 N9 DG DG DG 10 10 10 N 1 -2.71 0.40 105.40 102.69 B B B N9 C4 C5 DG DG DG 10 10 10 N 1 10.45 1.20 119.70 130.15 B B B C3' O3' P DG DG CBR 10 10 11 Y 1 11.23 1.50 119.60 130.83 B B B OP1 P OP2 DG DG DG 12 12 12 N 1 -8.55 0.80 109.40 100.85 B B B O5' C5' C4' DG DG DG 12 12 12 N 1 6.12 0.90 116.20 122.32 B B B N1 C2 N2 DG DG DG 12 12 12 N 1 -4.28 0.70 119.90 115.62 B B B N3 C2 N2 DG DG DG 12 12 12 N 1 A A O3' P CBR DG 1 2 0.103 0.012 1.607 1.710 Y 1 A A C5 N7 DG DG 2 2 0.038 0.006 1.388 1.426 N 1 A A O4' C4' DG DG 4 4 -0.087 0.010 1.446 1.359 N 1 A A C2 N3 DG DG 4 4 0.062 0.008 1.323 1.385 N 1 A A C6 N1 DG DG 4 4 -0.046 0.007 1.391 1.345 N 1 A A P O5' DG DG 6 6 0.081 0.010 1.593 1.674 N 1 A A C4 C5 DG DG 6 6 -0.048 0.007 1.379 1.331 N 1 A A C5 N7 DG DG 6 6 0.075 0.006 1.388 1.463 N 1 B B P OP2 DG DG 8 8 -0.112 0.017 1.485 1.373 N 1 B B O4' C4' DG DG 8 8 -0.082 0.010 1.446 1.364 N 1 B B C2 N3 DG DG 8 8 0.056 0.008 1.323 1.379 N 1 B B C8 N9 DG DG 8 8 -0.045 0.007 1.374 1.329 N 1 B B P O5' DG DG 10 10 0.060 0.010 1.593 1.653 N 1 B B C3' C2' DG DG 10 10 -0.049 0.008 1.516 1.467 N 1 B B O4' C4' DG DG 10 10 -0.066 0.010 1.446 1.380 N 1 B B C5 N7 DG DG 10 10 0.040 0.006 1.388 1.428 N 1 B B N7 C8 DG DG 10 10 -0.055 0.006 1.305 1.250 N 1 B B N9 C4 DG DG 10 10 0.075 0.008 1.375 1.450 N 1 B B O3' P DG CBR 10 11 -0.129 0.012 1.607 1.478 Y 1 B B O3' P CBR DG 11 12 0.083 0.012 1.607 1.690 Y 0.1247 1.400 10.000 3765 1.00 0.47 1 2.000 TR isotropic TR isotropic 1.400 10.000 83 329 6 240 0 fix ref 1.400 10.000 1DN5 5470 3765 2.000 1 refinement NUCLSQ SOLVATION OF THE LEFT-HANDED HEXAMER D(5BRC-G-5BRC-G-5BRC-G) IN CRYSTALS GROWN AT TWO TEMPERATURES 1 N N 1 N N 2 N N 2 N N covale 1.710 both A CBR 1 A O3' CBR 1 1_555 A DG 2 A P DG 2 1_555 covale 1.666 both A DG 2 A O3' DG 2 1_555 A CBR 3 A P CBR 3 1_555 covale 1.654 both A CBR 3 A O3' CBR 3 1_555 A DG 4 A P DG 4 1_555 covale 1.588 both A DG 4 A O3' DG 4 1_555 A CBR 5 A P CBR 5 1_555 covale 1.584 both A CBR 5 A O3' CBR 5 1_555 A DG 6 A P DG 6 1_555 covale 1.615 both B CBR 7 B O3' CBR 1 1_555 B DG 8 B P DG 2 1_555 covale 1.591 both B DG 8 B O3' DG 2 1_555 B CBR 9 B P CBR 3 1_555 covale 1.563 both B CBR 9 B O3' CBR 3 1_555 B DG 10 B P DG 4 1_555 covale 1.478 both B DG 10 B O3' DG 4 1_555 B CBR 11 B P CBR 5 1_555 covale 1.690 both B CBR 11 B O3' CBR 5 1_555 B DG 12 B P DG 6 1_555 hydrog WATSON-CRICK A CBR 1 A N3 CBR 1 1_555 B DG 12 B N1 DG 6 1_555 hydrog WATSON-CRICK A CBR 1 A N4 CBR 1 1_555 B DG 12 B O6 DG 6 1_555 hydrog WATSON-CRICK A CBR 1 A O2 CBR 1 1_555 B DG 12 B N2 DG 6 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B CBR 11 B N3 CBR 5 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B CBR 11 B O2 CBR 5 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B CBR 11 B N4 CBR 5 1_555 hydrog WATSON-CRICK A CBR 3 A N3 CBR 3 1_555 B DG 10 B N1 DG 4 1_555 hydrog WATSON-CRICK A CBR 3 A N4 CBR 3 1_555 B DG 10 B O6 DG 4 1_555 hydrog WATSON-CRICK A CBR 3 A O2 CBR 3 1_555 B DG 10 B N2 DG 4 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B CBR 9 B N3 CBR 3 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B CBR 9 B O2 CBR 3 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B CBR 9 B N4 CBR 3 1_555 hydrog WATSON-CRICK A CBR 5 A N3 CBR 5 1_555 B DG 8 B N1 DG 2 1_555 hydrog WATSON-CRICK A CBR 5 A N4 CBR 5 1_555 B DG 8 B O6 DG 2 1_555 hydrog WATSON-CRICK A CBR 5 A O2 CBR 5 1_555 B DG 8 B N2 DG 2 1_555 hydrog WATSON-CRICK A DG 6 A N1 DG 6 1_555 B CBR 7 B N3 CBR 1 1_555 hydrog WATSON-CRICK A DG 6 A N2 DG 6 1_555 B CBR 7 B O2 CBR 1 1_555 hydrog WATSON-CRICK A DG 6 A O6 DG 6 1_555 B CBR 7 B N4 CBR 1 1_555 DNA Z-DNA, DOUBLE HELIX, MODIFIED, DNA 1DN5 PDB 1 1DN5 1 6 1DN5 1 6 1DN5 A 1 1 6 7 12 1DN5 7 12 1DN5 B 1 1 6 19 P 21 21 21