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41.744
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40.593
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40.127
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40.467
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42.142
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41.273
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29.660
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6
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10.611
25.353
18.842
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7
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7
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10.100
23.954
18.965
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11.164
25.992
20.076
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11.757
25.494
17.662
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11.454
24.996
16.317
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12.808
24.792
15.610
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12.962
26.200
15.293
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O
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14.008
24.275
16.381
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14.896
23.188
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14.774
25.562
16.705
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14.339
26.454
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14.751
27.858
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14.244
28.868
16.495
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14.891
29.982
16.389
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15.910
29.710
15.493
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7
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16.943
30.539
14.996
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17.142
31.735
15.276
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17.772
29.846
14.108
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17.609
28.537
13.723
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7
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C
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18.496
28.048
12.842
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16.667
27.758
14.183
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15.820
28.424
15.033
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7
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15.408
21.938
16.930
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8
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20.743
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8
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22.364
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21.345
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21.685
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18.324
22.831
15.246
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17.591
24.121
14.979
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O
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18.958
22.976
16.641
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20.376
23.261
16.710
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O
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18.121
24.176
17.165
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18.302
24.982
15.822
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8
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C
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18.487
26.386
16.050
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N
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17.785
27.260
16.829
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8
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C
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18.247
28.474
16.876
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8
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N
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19.429
28.388
16.173
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8
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C
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20.417
29.348
15.840
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8
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8
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C
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20.371
30.575
16.282
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8
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8
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N
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21.490
28.954
15.135
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8
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8
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N
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21.531
27.668
14.695
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8
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8
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C
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20.666
26.685
14.942
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8
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8
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N
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19.606
27.120
15.674
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8
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8
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C
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21.277
22.681
17.885
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9
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9
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P
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21.599
21.273
17.447
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9
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9
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O
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20.571
22.708
19.186
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22.636
23.474
17.877
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9
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O
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23.909
23.098
17.432
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24.756
24.076
16.685
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C
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23.913
24.683
15.679
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O
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25.566
25.150
17.398
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C
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26.966
24.910
17.670
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O
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25.494
26.332
16.450
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24.094
26.087
15.879
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C
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23.057
26.594
16.794
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9
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N
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21.975
25.978
17.313
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C
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21.232
26.717
18.045
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N
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21.871
27.953
18.043
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C
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21.522
29.194
18.666
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C
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20.516
29.343
19.386
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O
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22.441
30.186
18.318
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23.564
30.036
17.576
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C
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24.420
31.060
17.321
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9
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N
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23.890
28.886
16.972
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N
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23.012
27.890
17.274
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9
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9
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C
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24.996
40.313
20.420
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10
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1
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O
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25.892
39.239
20.734
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10
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DC
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1
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C
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26.046
38.089
19.757
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1
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C
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26.073
36.889
20.687
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1
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O
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37.790
18.637
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1
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C
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25.249
37.006
17.400
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1
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O
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36.929
19.522
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1
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C
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25.412
35.933
19.905
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1
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C
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24.769
34.692
20.130
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10
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1
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N
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24.919
33.673
19.171
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10
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1
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C
36.00
25.657
33.836
18.194
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10
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2
1
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O
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24.176
32.532
19.341
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10
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1
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N
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23.356
32.364
20.348
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10
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2
1
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C
36.00
22.695
31.241
20.528
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10
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1
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N
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23.184
33.419
21.312
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10
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2
1
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1
C
36.00
23.890
34.529
21.171
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10
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2
1
1.00
1
C
46.00
24.343
37.441
16.131
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P
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11
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2
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P
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24.937
38.823
15.827
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11
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2
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O
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22.890
37.437
16.322
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11
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2
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O
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24.728
36.581
14.858
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2
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O
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25.489
36.807
13.653
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11
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DT
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2
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C
41.00
25.892
35.503
12.961
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11
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DT
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2
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C
41.00
26.141
34.588
14.104
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11
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2
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O
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24.860
34.814
12.113
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11
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2
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C
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24.728
35.127
10.711
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11
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2
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O
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25.082
33.324
12.338
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11
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DT
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2
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C
41.00
25.485
33.329
13.814
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11
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DT
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2
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C
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24.380
33.125
14.764
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N1
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11
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2
2
1.00
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N
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23.646
31.943
14.704
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11
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2
2
1.00
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C
36.00
23.877
31.096
13.871
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11
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2
2
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O
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22.631
31.816
15.612
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11
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2
2
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N
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22.283
32.745
16.581
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11
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2
2
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C
36.00
21.372
32.559
17.383
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11
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2
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O
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23.080
33.963
16.581
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11
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2
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C
36.00
22.754
35.023
17.581
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11
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2
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C
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24.063
34.072
15.713
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11
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2
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C
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23.234
35.675
10.367
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12
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3
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P
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23.478
37.151
10.490
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12
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3
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O
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22.165
35.285
11.331
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3
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O
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22.953
35.150
8.925
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3
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O
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23.447
34.117
8.144
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DC
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DC
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3
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C
41.00
23.057
32.690
8.388
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12
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DC
2
3
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C
41.00
23.424
32.224
9.716
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12
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DC
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3
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O
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21.653
32.160
8.168
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DC
12
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DC
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3
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C
46.00
21.255
31.975
6.776
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DC
12
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DC
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3
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O
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21.712
30.838
8.945
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DC
12
ATOM
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DC
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3
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C
41.00
22.627
31.087
10.164
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12
ATOM
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DC
2
3
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C
36.00
21.843
31.381
11.361
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N1
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12
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N1
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2
3
1.00
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N
36.00
20.969
30.421
11.883
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12
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C2
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2
3
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C
36.00
20.915
29.307
11.356
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12
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O2
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2
3
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O
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20.204
30.720
12.966
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N3
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12
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N3
DC
2
3
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N
36.00
20.272
31.934
13.510
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12
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C4
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2
3
1.00
1
C
36.00
19.515
32.228
14.563
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N4
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12
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N4
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2
3
1.00
1
N
36.00
21.159
32.953
12.971
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12
ATOM
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C5
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2
3
1.00
1
C
36.00
21.902
32.613
11.940
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C6
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12
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C6
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2
3
1.00
1
C
46.00
19.701
31.916
6.314
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P
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13
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P
DC
2
4
1.00
1
P
46.00
19.457
33.007
5.290
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13
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2
4
1.00
1
O
46.00
18.895
32.120
7.560
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13
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2
4
1.00
1
O
46.00
19.470
30.503
5.611
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13
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DC
2
4
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O
41.00
19.262
29.131
5.910
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13
ATOM
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DC
2
4
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1
C
41.00
17.853
28.727
6.294
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13
ATOM
B
C4'
DC
2
4
1.00
1
C
41.00
17.776
28.832
7.755
B
O4'
DC
13
ATOM
B
O4'
DC
2
4
1.00
1
O
41.00
16.694
29.552
5.745
B
C3'
DC
13
ATOM
B
C3'
DC
2
4
1.00
1
C
46.00
15.553
28.863
5.221
B
O3'
DC
13
ATOM
B
O3'
DC
2
4
1.00
1
O
41.00
16.318
30.426
6.929
B
C2'
DC
13
ATOM
B
C2'
DC
2
4
1.00
1
C
41.00
16.540
29.470
8.121
B
C1'
DC
13
ATOM
B
C1'
DC
2
4
1.00
1
C
36.00
16.418
30.276
9.338
B
N1
DC
13
ATOM
B
N1
DC
2
4
1.00
1
N
36.00
15.213
30.154
10.092
B
C2
DC
13
ATOM
B
C2
DC
2
4
1.00
1
C
36.00
14.343
29.343
9.756
B
O2
DC
13
ATOM
B
O2
DC
2
4
1.00
1
O
36.00
15.045
30.906
11.208
B
N3
DC
13
ATOM
B
N3
DC
2
4
1.00
1
N
36.00
15.996
31.771
11.586
B
C4
DC
13
ATOM
B
C4
DC
2
4
1.00
1
C
36.00
15.738
32.477
12.696
B
N4
DC
13
ATOM
B
N4
DC
2
4
1.00
1
N
36.00
17.215
31.916
10.837
B
C5
DC
13
ATOM
B
C5
DC
2
4
1.00
1
C
36.00
17.382
31.164
9.751
B
C6
DC
13
ATOM
B
C6
DC
2
4
1.00
1
C
46.00
14.126
29.525
4.897
B
P
DC
14
ATOM
B
P
DC
2
5
1.00
1
P
46.00
14.230
30.494
3.764
B
OP1
DC
14
ATOM
B
OP1
DC
2
5
1.00
1
O
46.00
13.655
30.272
6.093
B
OP2
DC
14
ATOM
B
OP2
DC
2
5
1.00
1
O
46.00
13.098
28.329
4.625
B
O5'
DC
14
ATOM
B
O5'
DC
2
5
1.00
1
O
41.00
12.677
27.450
5.646
B
C5'
DC
14
ATOM
B
C5'
DC
2
5
1.00
1
C
41.00
11.794
27.921
6.712
B
C4'
DC
14
ATOM
B
C4'
DC
2
5
1.00
1
C
41.00
12.296
28.193
8.057
B
O4'
DC
14
ATOM
B
O4'
DC
2
5
1.00
1
O
41.00
11.001
29.217
6.477
B
C3'
DC
14
ATOM
B
C3'
DC
2
5
1.00
1
C
46.00
10.376
29.275
5.211
B
O3'
DC
14
ATOM
B
O3'
DC
2
5
1.00
1
O
41.00
10.149
29.094
7.765
B
C2'
DC
14
ATOM
B
C2'
DC
2
5
1.00
1
C
41.00
11.336
28.990
8.792
B
C1'
DC
14
ATOM
B
C1'
DC
2
5
1.00
1
C
36.00
11.694
30.367
9.153
B
N1
DC
14
ATOM
B
N1
DC
2
5
1.00
1
N
36.00
10.901
31.073
10.092
B
C2
DC
14
ATOM
B
C2
DC
2
5
1.00
1
C
36.00
9.950
30.476
10.607
B
O2
DC
14
ATOM
B
O2
DC
2
5
1.00
1
O
36.00
11.191
32.369
10.392
B
N3
DC
14
ATOM
B
N3
DC
2
5
1.00
1
N
36.00
12.233
32.989
9.793
B
C4
DC
14
ATOM
B
C4
DC
2
5
1.00
1
C
36.00
12.509
34.280
10.082
B
N4
DC
14
ATOM
B
N4
DC
2
5
1.00
1
N
36.00
13.030
32.296
8.819
B
C5
DC
14
ATOM
B
C5
DC
2
5
1.00
1
C
36.00
12.695
31.055
8.532
B
C6
DC
14
ATOM
B
C6
DC
2
5
1.00
1
C
46.00
10.100
30.589
4.318
B
P
DA
15
ATOM
B
P
DA
2
6
1.00
1
P
46.00
9.733
30.140
2.911
B
OP1
DA
15
ATOM
B
OP1
DA
2
6
1.00
1
O
46.00
11.323
31.472
4.362
B
OP2
DA
15
ATOM
B
OP2
DA
2
6
1.00
1
O
46.00
8.800
31.309
4.941
B
O5'
DA
15
ATOM
B
O5'
DA
2
6
1.00
1
O
41.00
7.563
30.548
4.892
B
C5'
DA
15
ATOM
B
C5'
DA
2
6
1.00
1
C
41.00
6.857
31.010
6.118
B
C4'
DA
15
ATOM
B
C4'
DA
2
6
1.00
1
C
41.00
7.717
31.006
7.278
B
O4'
DA
15
ATOM
B
O4'
DA
2
6
1.00
1
O
41.00
6.363
32.473
6.029
B
C3'
DA
15
ATOM
B
C3'
DA
2
6
1.00
1
C
46.00
5.358
32.591
5.013
B
O3'
DA
15
ATOM
B
O3'
DA
2
6
1.00
1
O
41.00
5.992
32.618
7.491
B
C2'
DA
15
ATOM
B
C2'
DA
2
6
1.00
1
C
41.00
7.111
31.875
8.260
B
C1'
DA
15
ATOM
B
C1'
DA
2
6
1.00
1
C
36.00
8.066
32.890
8.737
B
N9
DA
15
ATOM
B
N9
DA
2
6
1.00
1
N
36.00
9.239
33.288
8.129
B
C8
DA
15
ATOM
B
C8
DA
2
6
1.00
1
C
36.00
9.869
34.253
8.769
B
N7
DA
15
ATOM
B
N7
DA
2
6
1.00
1
N
36.00
9.067
34.493
9.867
B
C5
DA
15
ATOM
B
C5
DA
2
6
1.00
1
C
36.00
9.180
35.412
10.926
B
C6
DA
15
ATOM
B
C6
DA
2
6
1.00
1
C
36.00
10.245
36.227
10.997
B
N6
DA
15
ATOM
B
N6
DA
2
6
1.00
1
N
36.00
8.216
35.421
11.888
B
N1
DA
15
ATOM
B
N1
DA
2
6
1.00
1
N
36.00
7.197
34.552
11.742
B
C2
DA
15
ATOM
B
C2
DA
2
6
1.00
1
C
36.00
6.961
33.646
10.777
B
N3
DA
15
ATOM
B
N3
DA
2
6
1.00
1
N
36.00
7.939
33.673
9.865
B
C4
DA
15
ATOM
B
C4
DA
2
6
1.00
1
C
46.00
4.411
33.845
4.565
B
P
DT
16
ATOM
B
P
DT
2
7
1.00
1
P
46.00
3.139
33.564
3.846
B
OP1
DT
16
ATOM
B
OP1
DT
2
7
1.00
1
O
46.00
5.281
34.765
3.781
B
OP2
DT
16
ATOM
B
OP2
DT
2
7
1.00
1
O
46.00
4.081
34.244
6.061
B
O5'
DT
16
ATOM
B
O5'
DT
2
7
1.00
1
O
41.00
3.080
33.315
6.697
B
C5'
DT
16
ATOM
B
C5'
DT
2
7
1.00
1
C
41.00
2.622
34.167
7.899
B
C4'
DT
16
ATOM
B
C4'
DT
2
7
1.00
1
C
41.00
3.909
34.321
8.599
B
O4'
DT
16
ATOM
B
O4'
DT
2
7
1.00
1
O
41.00
2.151
35.516
7.379
B
C3'
DT
16
ATOM
B
C3'
DT
2
7
1.00
1
C
46.00
0.806
35.843
7.078
B
O3'
DT
16
ATOM
B
O3'
DT
2
7
1.00
1
O
41.00
3.120
36.490
7.993
B
C2'
DT
16
ATOM
B
C2'
DT
2
7
1.00
1
C
41.00
4.244
35.698
8.660
B
C1'
DT
16
ATOM
B
C1'
DT
2
7
1.00
1
C
36.00
5.598
36.178
8.379
B
N1
DT
16
ATOM
B
N1
DT
2
7
1.00
1
N
36.00
6.128
37.124
9.269
B
C2
DT
16
ATOM
B
C2
DT
2
7
1.00
1
C
36.00
5.589
37.591
10.253
B
O2
DT
16
ATOM
B
O2
DT
2
7
1.00
1
O
36.00
7.382
37.582
8.987
B
N3
DT
16
ATOM
B
N3
DT
2
7
1.00
1
N
36.00
8.175
37.206
7.914
B
C4
DT
16
ATOM
B
C4
DT
2
7
1.00
1
C
36.00
9.307
37.699
7.797
B
O4
DT
16
ATOM
B
O4
DT
2
7
1.00
1
O
36.00
7.563
36.241
7.038
B
C5
DT
16
ATOM
B
C5
DT
2
7
1.00
1
C
36.00
8.392
35.756
5.849
B
C7
DT
16
ATOM
B
C7
DT
2
7
1.00
1
C
36.00
6.332
35.779
7.295
B
C6
DT
16
ATOM
B
C6
DT
2
7
1.00
1
C
46.00
0.376
37.283
6.462
B
P
DC
17
ATOM
B
P
DC
2
8
1.00
1
P
46.00
-1.123
37.278
6.529
B
OP1
DC
17
ATOM
B
OP1
DC
2
8
1.00
1
O
46.00
0.919
37.636
5.119
B
OP2
DC
17
ATOM
B
OP2
DC
2
8
1.00
1
O
46.00
0.965
38.379
7.481
B
O5'
DC
17
ATOM
B
O5'
DC
2
8
1.00
1
O
41.00
0.199
38.528
8.707
B
C5'
DC
17
ATOM
B
C5'
DC
2
8
1.00
1
C
41.00
0.118
39.996
9.101
B
C4'
DC
17
ATOM
B
C4'
DC
2
8
1.00
1
C
41.00
1.499
40.308
9.410
B
O4'
DC
17
ATOM
B
O4'
DC
2
8
1.00
1
O
41.00
-0.299
40.883
7.978
B
C3'
DC
17
ATOM
B
C3'
DC
2
8
1.00
1
C
46.00
-1.042
42.079
8.247
B
O3'
DC
17
ATOM
B
O3'
DC
2
8
1.00
1
O
41.00
1.010
41.268
7.290
B
C2'
DC
17
ATOM
B
C2'
DC
2
8
1.00
1
C
41.00
1.943
41.327
8.475
B
C1'
DC
17
ATOM
B
C1'
DC
2
8
1.00
1
C
36.00
3.333
41.033
8.129
B
N1
DC
17
ATOM
B
N1
DC
2
8
1.00
1
N
36.00
4.298
42.074
8.285
B
C2
DC
17
ATOM
B
C2
DC
2
8
1.00
1
C
36.00
3.922
43.198
8.668
B
O2
DC
17
ATOM
B
O2
DC
2
8
1.00
1
O
36.00
5.580
41.780
7.931
B
N3
DC
17
ATOM
B
N3
DC
2
8
1.00
1
N
36.00
5.910
40.553
7.530
B
C4
DC
17
ATOM
B
C4
DC
2
8
1.00
1
C
36.00
7.151
40.254
7.216
B
N4
DC
17
ATOM
B
N4
DC
2
8
1.00
1
N
36.00
4.946
39.506
7.387
B
C5
DC
17
ATOM
B
C5
DC
2
8
1.00
1
C
36.00
3.678
39.774
7.703
B
C6
DC
17
ATOM
B
C6
DC
2
8
1.00
1
C
46.00
-1.916
42.577
7.016
B
P
DC
18
ATOM
B
P
DC
2
9
1.00
1
P
46.00
-3.342
42.509
7.520
B
OP1
DC
18
ATOM
B
OP1
DC
2
9
1.00
1
O
46.00
-1.807
41.626
5.851
B
OP2
DC
18
ATOM
B
OP2
DC
2
9
1.00
1
O
46.00
-1.563
44.076
6.647
B
O5'
DC
18
ATOM
B
O5'
DC
2
9
1.00
1
O
41.00
-2.142
45.285
7.172
B
C5'
DC
18
ATOM
B
C5'
DC
2
9
1.00
1
C
41.00
-1.110
46.246
7.736
B
C4'
DC
18
ATOM
B
C4'
DC
2
9
1.00
1
C
41.00
0.068
45.480
8.173
B
O4'
DC
18
ATOM
B
O4'
DC
2
9
1.00
1
O
41.00
-0.598
47.314
6.793
B
C3'
DC
18
ATOM
B
C3'
DC
2
9
1.00
1
C
46.00
-0.340
48.660
7.216
B
O3'
DC
18
ATOM
B
O3'
DC
2
9
1.00
1
O
41.00
0.693
46.708
6.257
B
C2'
DC
18
ATOM
B
C2'
DC
2
9
1.00
1
C
41.00
1.245
45.874
7.473
B
C1'
DC
18
ATOM
B
C1'
DC
2
9
1.00
1
C
36.00
2.323
45.036
6.939
B
N1
DC
18
ATOM
B
N1
DC
2
9
1.00
1
N
36.00
3.641
45.503
7.206
B
C2
DC
18
ATOM
B
C2
DC
2
9
1.00
1
C
36.00
3.854
46.495
7.928
B
O2
DC
18
ATOM
B
O2
DC
2
9
1.00
1
O
36.00
4.733
44.810
6.709
B
N3
DC
18
ATOM
B
N3
DC
2
9
1.00
1
N
36.00
4.529
43.768
5.896
B
C4
DC
18
ATOM
B
C4
DC
2
9
1.00
1
C
36.00
5.652
43.175
5.480
B
N4
DC
18
ATOM
B
N4
DC
2
9
1.00
1
N
36.00
3.197
43.320
5.619
B
C5
DC
18
ATOM
B
C5
DC
2
9
1.00
1
C
36.00
2.165
43.977
6.121
B
C6
DC
18
ATOM
B
C6
DC
2
9
1.00
1
C
0.022080
0.000000
0.000000
0.000000
0.022080
0.000000
0.000000
0.000000
0.040437
0.00000
0.00000
0.00000
McCall, M.
Brown, T.
Hunter, W.N.
Kennard, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
45.290
45.290
24.730
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
Y
13
N
N
Y
14
N
C
Y
15
N
N
Y
16
N
C
Y
17
N
C
N
18
N
N
Y
19
N
N
Y
20
N
C
Y
21
N
N
Y
22
N
C
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
O
N
38
N
P
N
39
N
O
N
40
N
O
N
41
N
O
N
42
N
C
N
43
R
C
N
44
N
O
N
45
S
C
N
46
N
O
N
47
N
C
N
48
R
C
N
49
N
N
N
50
N
C
N
51
N
O
N
52
N
N
N
53
N
C
N
54
N
N
N
55
N
C
N
56
N
C
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
O
N
72
N
P
N
73
N
O
N
74
N
O
N
75
N
O
N
76
N
C
N
77
R
C
N
78
N
O
N
79
S
C
N
80
N
O
N
81
N
C
N
82
R
C
Y
83
N
N
Y
84
N
C
Y
85
N
N
Y
86
N
C
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
N
Y
93
N
C
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
N
C
N
119
R
C
N
120
N
N
N
121
N
C
N
122
N
O
N
123
N
N
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
Y
24
N
sing
Y
25
N
sing
Y
26
N
doub
N
27
N
sing
Y
28
N
sing
Y
29
N
sing
Y
30
N
doub
N
31
N
sing
Y
32
N
doub
N
33
N
sing
N
34
N
sing
Y
35
N
sing
Y
36
N
doub
N
37
N
sing
Y
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
doub
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
Y
97
N
sing
Y
98
N
sing
Y
99
N
doub
N
100
N
sing
Y
101
N
sing
N
102
N
sing
Y
103
N
doub
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
UK
Nature
NATUAS
0006
0028-0836
322
661
664
10.1038/322661a0
3748146
The crystal structure of d(GGATGGGAG): an essential part of the binding site for transcription factor IIIA.
1986
10.2210/pdb1dn6/pdb
pdb_00001dn6
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
DIFFRACTOMETER
x-ray
1
1.0
2860.884
DNA (5'-D(*GP*GP*AP*TP*GP*GP*GP*AP*G)-3')
1
syn
polymer
2611.726
DNA (5'-D(*CP*TP*CP*CP*CP*AP*TP*CP*C)-3')
1
syn
polymer
no
no
(DG)(DG)(DA)(DT)(DG)(DG)(DG)(DA)(DG)
GGATGGGAG
A
polydeoxyribonucleotide
no
no
(DC)(DT)(DC)(DC)(DC)(DA)(DT)(DC)(DC)
CTCCCATCC
B
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
2.32
46.92
VAPOR DIFFUSION
VAPOR DIFFUSION, temperature 293.00K
293.00
WATER
1
MPD
1
MG ACETATE
1
NA CACODYLATE
1
SPERMINE_HCL
1
WATER
2
MPD
2
-8.087
1
19
A
1
B
18
0.763
A_DG1:DC18_B
1
-23.810
0.955
-0.288
0.170
18.850
1
19
A
2
B
17
-9.105
A_DG2:DC17_B
2
12.535
-1.250
0.352
-0.662
-13.211
1
20
A
3
B
16
-0.683
A_DA3:DT16_B
3
-3.874
-1.153
-0.583
-0.216
-17.333
1
20
A
4
B
15
-5.557
A_DT4:DA15_B
4
7.747
-0.193
-0.020
-0.013
5.252
1
19
A
5
B
14
-3.588
A_DG5:DC14_B
5
-8.105
-0.316
1.037
-0.615
12.565
1
19
A
6
B
13
-7.286
A_DG6:DC13_B
6
18.229
0.075
-0.381
-0.174
-8.543
1
19
A
7
B
12
-12.338
A_DG7:DC12_B
7
7.577
0.874
-0.741
-0.334
-1.060
1
20
A
8
B
11
-26.188
A_DA8:DT11_B
8
16.805
-0.855
-0.092
-0.390
14.453
1
19
A
9
B
10
-11.189
A_DG9:DC10_B
9
14.482
2.002
-0.910
-0.600
2.037
17.419
A
A
1
2
12.839
B
B
18
17
2.279
3.848
0.380
-0.586
AA_DG1DG2:DC17DC18_BB
1
-1.995
6.656
16.875
-3.521
-2.076
2.426
43.835
A
A
2
3
38.302
B
B
17
16
4.028
26.753
1.300
-1.423
AA_DG2DA3:DT16DC17_BB
2
0.610
-0.873
35.042
-4.734
-1.677
3.271
36.567
A
A
3
4
12.546
B
B
16
15
3.488
7.789
-1.130
-1.288
AA_DA3DT4:DA15DT16_BB
3
-5.299
8.535
35.373
-3.182
1.033
0.930
18.630
A
A
4
5
21.377
B
B
15
14
2.209
6.463
0.133
-2.263
AA_DT4DG5:DC14DA15_BB
4
-9.083
30.044
14.951
-8.843
-3.017
3.289
41.729
A
A
5
6
-16.259
B
B
14
13
3.086
-11.348
-0.232
-1.687
AA_DG5DG6:DC13DC14_BB
5
9.626
-13.793
39.096
-1.162
1.349
2.575
35.533
A
A
6
7
32.492
B
B
13
12
4.651
18.832
0.319
-2.720
AA_DG6DG7:DC12DC13_BB
6
3.667
-6.327
30.050
-7.772
0.123
2.708
19.591
A
A
7
8
6.069
B
B
12
11
2.941
2.023
-0.308
-1.503
AA_DG7DA8:DT11DC12_BB
7
-6.507
19.525
18.379
-5.293
-1.914
2.940
61.255
A
A
8
9
-5.266
B
B
11
10
2.799
-5.359
1.036
-1.557
AA_DA8DG9:DC10DT11_BB
8
1.814
-1.783
61.018
-1.305
-0.941
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
1
0
1988-01-16
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
BNL
Y
BNL
1987-05-11
REL
G
1
n
1
DG
1
A
G
2
n
2
DG
2
A
A
3
n
3
DA
3
A
T
4
n
4
DT
4
A
G
5
n
5
DG
5
A
G
6
n
6
DG
6
A
G
7
n
7
DG
7
A
A
8
n
8
DA
8
A
G
9
n
9
DG
9
A
C
10
n
1
DC
10
B
T
11
n
2
DT
11
B
C
12
n
3
DC
12
B
C
13
n
4
DC
13
B
C
14
n
5
DC
14
B
A
15
n
6
DA
15
B
T
16
n
7
DT
16
B
C
17
n
8
DC
17
B
C
18
n
9
DC
18
B
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
7.96
0.30
108.30
116.26
A
A
A
O4'
C1'
N9
DG
DG
DG
1
1
1
N
1
4.37
0.70
119.90
124.27
A
A
A
N3
C2
N2
DG
DG
DG
1
1
1
N
1
8.80
1.10
110.50
119.30
A
A
A
O3'
P
OP1
DG
DG
DG
1
2
2
Y
1
-9.72
1.50
119.60
109.88
A
A
A
OP1
P
OP2
DG
DG
DG
2
2
2
N
1
19.73
1.20
119.70
139.43
A
A
A
C3'
O3'
P
DG
DG
DA
2
2
3
Y
1
-3.74
0.40
104.50
100.76
A
A
A
O4'
C4'
C3'
DA
DA
DA
3
3
3
N
1
9.56
1.20
115.70
125.26
A
A
A
C5'
C4'
C3'
DA
DA
DA
3
3
3
N
1
-8.50
0.70
102.20
93.70
A
A
A
C4'
C3'
C2'
DA
DA
DA
3
3
3
N
1
10.63
0.30
108.30
118.93
A
A
A
O4'
C1'
N9
DA
DA
DA
3
3
3
N
1
26.03
1.20
119.70
145.73
A
A
A
C3'
O3'
P
DA
DA
DT
3
3
4
Y
1
6.78
1.10
110.50
117.28
A
A
A
O3'
P
OP1
DA
DT
DT
3
4
4
Y
1
-7.12
0.80
109.40
102.28
A
A
A
O5'
C5'
C4'
DT
DT
DT
4
4
4
N
1
8.56
0.30
108.30
116.86
A
A
A
O4'
C1'
N1
DT
DT
DT
4
4
4
N
1
-9.01
0.40
104.50
95.49
A
A
A
O4'
C4'
C3'
DG
DG
DG
5
5
5
N
1
11.69
1.20
115.70
127.39
A
A
A
C5'
C4'
C3'
DG
DG
DG
5
5
5
N
1
-9.17
1.00
110.10
100.93
A
A
A
C1'
O4'
C4'
DG
DG
DG
5
5
5
N
1
15.28
2.00
112.30
127.58
A
A
A
C4'
C3'
O3'
DG
DG
DG
5
5
5
N
1
-13.87
0.70
102.20
88.33
A
A
A
C4'
C3'
C2'
DG
DG
DG
5
5
5
N
1
-5.88
0.80
102.40
96.52
A
A
A
C3'
C2'
C1'
DG
DG
DG
5
5
5
N
1
7.28
0.30
108.30
115.58
A
A
A
O4'
C1'
N9
DG
DG
DG
5
5
5
N
1
-3.02
0.40
106.40
103.38
A
A
A
C8
N9
C4
DG
DG
DG
5
5
5
N
1
-4.50
0.70
119.90
115.40
A
A
A
N3
C2
N2
DG
DG
DG
5
5
5
N
1
16.59
1.20
119.70
136.29
A
A
A
C3'
O3'
P
DG
DG
DG
5
5
6
Y
1
-6.13
0.80
109.40
103.27
A
A
A
O5'
C5'
C4'
DG
DG
DG
6
6
6
N
1
5.48
0.90
103.10
108.58
A
A
A
C4'
C3'
C2'
DG
DG
DG
6
6
6
N
1
4.96
0.60
106.00
110.96
A
A
A
O4'
C4'
C3'
DG
DG
DG
7
7
7
N
1
-15.57
1.90
109.30
93.73
A
A
A
C5'
C4'
O4'
DG
DG
DG
7
7
7
N
1
-6.49
1.00
110.10
103.61
A
A
A
C1'
O4'
C4'
DG
DG
DG
7
7
7
N
1
14.56
2.00
112.30
126.86
A
A
A
C4'
C3'
O3'
DG
DG
DG
7
7
7
N
1
9.22
0.30
108.30
117.52
A
A
A
O4'
C1'
N9
DG
DG
DG
7
7
7
N
1
7.38
1.20
119.70
127.08
A
A
A
C3'
O3'
P
DG
DG
DA
7
7
8
Y
1
-10.18
1.50
119.60
109.42
A
A
A
OP1
P
OP2
DA
DA
DA
8
8
8
N
1
-10.15
1.00
110.10
99.95
A
A
A
C1'
O4'
C4'
DA
DA
DA
8
8
8
N
1
-9.78
0.80
102.40
92.62
A
A
A
C3'
C2'
C1'
DA
DA
DA
8
8
8
N
1
-7.84
0.80
105.90
98.06
A
A
A
O4'
C1'
C2'
DA
DA
DA
8
8
8
N
1
31.49
0.30
108.30
139.79
A
A
A
O4'
C1'
N9
DA
DA
DA
8
8
8
N
1
-2.49
0.40
105.80
103.31
A
A
A
C8
N9
C4
DA
DA
DA
8
8
8
N
1
9.76
1.60
120.90
130.66
A
A
A
P
O5'
C5'
DG
DG
DG
9
9
9
N
1
3.87
0.60
106.00
109.87
A
A
A
O4'
C4'
C3'
DG
DG
DG
9
9
9
N
1
-6.15
1.00
110.10
103.95
A
A
A
C1'
O4'
C4'
DG
DG
DG
9
9
9
N
1
6.60
0.90
116.20
122.80
A
A
A
N1
C2
N2
DG
DG
DG
9
9
9
N
1
-5.75
0.70
119.90
114.15
A
A
A
N3
C2
N2
DG
DG
DG
9
9
9
N
1
6.29
0.60
119.90
126.19
A
A
A
N1
C6
O6
DG
DG
DG
9
9
9
N
1
-5.11
0.60
128.60
123.49
A
A
A
C5
C6
O6
DG
DG
DG
9
9
9
N
1
8.52
1.20
115.70
124.22
B
B
B
C5'
C4'
C3'
DC
DC
DC
10
10
10
N
1
-9.20
1.00
110.10
100.90
B
B
B
C1'
O4'
C4'
DC
DC
DC
10
10
10
N
1
18.41
2.00
112.30
130.71
B
B
B
C4'
C3'
O3'
DC
DC
DC
10
10
10
N
1
-8.22
0.70
102.20
93.98
B
B
B
C4'
C3'
C2'
DC
DC
DC
10
10
10
N
1
-11.65
0.80
102.40
90.75
B
B
B
C3'
C2'
C1'
DC
DC
DC
10
10
10
N
1
-11.45
0.80
105.90
94.45
B
B
B
O4'
C1'
C2'
DC
DC
DC
10
10
10
N
1
28.07
0.30
108.30
136.37
B
B
B
O4'
C1'
N1
DC
DC
DC
10
10
10
N
1
14.69
1.60
120.90
135.59
B
B
B
P
O5'
C5'
DT
DT
DT
11
11
11
N
1
-8.46
1.20
119.70
111.24
B
B
B
C3'
O3'
P
DT
DT
DC
11
11
12
Y
1
-10.90
1.50
119.60
108.70
B
B
B
OP1
P
OP2
DC
DC
DC
12
12
12
N
1
14.13
1.60
120.90
135.03
B
B
B
P
O5'
C5'
DC
DC
DC
12
12
12
N
1
7.65
1.20
115.70
123.35
B
B
B
C5'
C4'
C3'
DC
DC
DC
12
12
12
N
1
4.53
0.30
108.30
112.83
B
B
B
O4'
C1'
N1
DC
DC
DC
12
12
12
N
1
20.78
1.60
120.90
141.68
B
B
B
P
O5'
C5'
DC
DC
DC
13
13
13
N
1
13.51
0.30
108.30
121.81
B
B
B
O4'
C1'
N1
DC
DC
DC
13
13
13
N
1
-11.77
1.50
119.60
107.83
B
B
B
OP1
P
OP2
DC
DC
DC
14
14
14
N
1
-5.24
0.40
104.50
99.26
B
B
B
O4'
C4'
C3'
DC
DC
DC
14
14
14
N
1
11.77
1.10
109.80
121.57
B
B
B
C5'
C4'
O4'
DC
DC
DC
14
14
14
N
1
-7.06
0.70
102.20
95.14
B
B
B
C4'
C3'
C2'
DC
DC
DC
14
14
14
N
1
10.35
0.30
108.30
118.65
B
B
B
O4'
C1'
N1
DC
DC
DC
14
14
14
N
1
-2.85
0.40
120.30
117.45
B
B
B
C6
N1
C2
DC
DC
DC
14
14
14
N
1
3.24
0.50
121.00
124.24
B
B
B
C5
C6
N1
DC
DC
DC
14
14
14
N
1
7.55
1.20
119.70
127.25
B
B
B
C3'
O3'
P
DC
DC
DA
14
14
15
Y
1
-7.07
0.80
109.40
102.33
B
B
B
O5'
C5'
C4'
DA
DA
DA
15
15
15
N
1
-5.70
0.70
102.20
96.50
B
B
B
C4'
C3'
C2'
DA
DA
DA
15
15
15
N
1
2.96
0.30
108.30
111.26
B
B
B
O4'
C1'
N9
DA
DA
DA
15
15
15
N
1
11.87
1.20
119.70
131.57
B
B
B
C3'
O3'
P
DA
DA
DT
15
15
16
Y
1
8.38
1.10
110.50
118.88
B
B
B
O3'
P
OP1
DA
DT
DT
15
16
16
Y
1
-8.70
0.80
109.40
100.70
B
B
B
O5'
C5'
C4'
DT
DT
DT
16
16
16
N
1
3.90
0.60
106.00
109.90
B
B
B
O4'
C4'
C3'
DT
DT
DT
16
16
16
N
1
12.56
2.00
112.30
124.86
B
B
B
C4'
C3'
O3'
DT
DT
DT
16
16
16
N
1
13.61
0.30
108.30
121.91
B
B
B
O4'
C1'
N1
DT
DT
DT
16
16
16
N
1
-5.81
0.60
122.30
116.49
B
B
B
N3
C2
O2
DT
DT
DT
16
16
16
N
1
-12.32
1.50
119.60
107.28
B
B
B
OP1
P
OP2
DC
DC
DC
18
18
18
N
1
20.62
0.30
108.30
128.92
B
B
B
O4'
C1'
N1
DC
DC
DC
18
18
18
N
1
5.42
0.70
120.20
125.62
B
B
B
C5
C4
N4
DC
DC
DC
18
18
18
N
1
A
A
C2'
C1'
DA
DA
3
3
0.070
0.010
1.519
1.589
N
1
A
A
N9
C4
DA
DA
3
3
0.041
0.006
1.374
1.415
N
1
A
A
O4'
C4'
DA
DA
8
8
0.059
0.009
1.449
1.508
N
1
B
B
C2'
C1'
DC
DC
10
10
0.131
0.010
1.519
1.650
N
1
B
B
O4'
C4'
DC
DC
10
10
0.069
0.009
1.449
1.518
N
1
A
B
C5'
C6
DG
DC
7
10
1.86
1_555
3_654
1
A
B
O3'
N4
DG
DC
7
10
1.91
1_555
3_654
1
A
B
C4'
C5
DG
DC
7
10
1.92
1_555
3_654
1
A
B
C4'
C4
DG
DC
7
10
2.04
1_555
3_654
0.3300000
3.000
10.000
1032
1
0.000
TF
isotropic
3.000
10.000
0
363
0
363
0
0.022
0.054
fix
2.700
25.000
1DN6
1786
1459
1
refinement
NUCLSQ
THE CRYSTAL STRUCTURE OF D(GGATGGGAG). AN ESSENTIAL PART OF THE BINDING SITE FOR TRANSCRIPTION FACTOR IIIA
1
N
N
2
N
N
hydrog
WATSON-CRICK
A
DG
1
A
N1
DG
1
1_555
B
DC
18
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
1
A
N2
DG
1
1_555
B
DC
18
B
O2
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
1
A
O6
DG
1
1_555
B
DC
18
B
N4
DC
9
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N1
DG
2
1_555
B
DC
17
B
N3
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
2
A
N2
DG
2
1_555
B
DC
17
B
O2
DC
8
1_555
hydrog
WATSON-CRICK
A
DG
2
A
O6
DG
2
1_555
B
DC
17
B
N4
DC
8
1_555
hydrog
DG-DC PAIR
A
DG
2
A
N1
DG
2
1_555
B
DC
18
B
N3
DC
9
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N1
DA
3
1_555
B
DT
16
B
N3
DT
7
1_555
hydrog
WATSON-CRICK
A
DA
3
A
N6
DA
3
1_555
B
DT
16
B
O4
DT
7
1_555
hydrog
WATSON-CRICK
A
DT
4
A
N3
DT
4
1_555
B
DA
15
B
N1
DA
6
1_555
hydrog
WATSON-CRICK
A
DT
4
A
O4
DT
4
1_555
B
DA
15
B
N6
DA
6
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N1
DG
5
1_555
B
DC
14
B
N3
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
5
A
N2
DG
5
1_555
B
DC
14
B
O2
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
5
A
O6
DG
5
1_555
B
DC
14
B
N4
DC
5
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
13
B
N3
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
13
B
O2
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
13
B
N4
DC
4
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N1
DG
7
1_555
B
DC
12
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
N2
DG
7
1_555
B
DC
12
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
7
A
O6
DG
7
1_555
B
DC
12
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N1
DA
8
1_555
B
DT
11
B
N3
DT
2
1_555
hydrog
WATSON-CRICK
A
DA
8
A
N6
DA
8
1_555
B
DT
11
B
O4
DT
2
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N1
DG
9
1_555
B
DC
10
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
9
A
N2
DG
9
1_555
B
DC
10
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
9
A
O6
DG
9
1_555
B
DC
10
B
N4
DC
1
1_555
hydrog
DG-DT MISPAIR
A
DG
9
A
N1
DG
9
1_555
B
DT
11
B
O4
DT
2
1_555
DNA
A-DNA, DOUBLE HELIX, DNA
1DN6
PDB
1
1DN6
1DN6
PDB
2
1DN6
1
9
1DN6
1
9
1DN6
A
1
1
9
10
18
1DN6
10
18
1DN6
B
2
1
9
78
P 43