0.057604
0.000000
0.000000
0.000000
0.032103
0.000000
0.000000
0.000000
0.022026
0.00000
0.00000
0.00000
Coll, M.
Saal, D.
Frederick, C.A.
Aymami, J.
Rich, A.
Wang, A.H.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
17.360
31.150
45.400
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H12 F N2 O8 P
326.172
5-FLUORO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
DNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
N
C
N
12
R
C
N
13
N
N
N
14
N
C
N
15
N
O
N
16
N
N
N
17
N
C
N
18
N
N
N
19
N
C
N
20
N
C
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
O
N
36
N
P
N
37
N
O
N
38
N
O
N
39
N
O
N
40
N
C
N
41
R
C
N
42
N
O
N
43
S
C
N
44
N
O
N
45
N
C
N
46
R
C
Y
47
N
N
Y
48
N
C
Y
49
N
N
Y
50
N
C
N
51
N
C
N
52
N
O
N
53
N
N
N
54
N
C
N
55
N
N
N
56
N
N
Y
57
N
C
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
O
N
73
N
H
N
74
N
H
N
75
N
MG
N
76
N
N
N
77
N
C
N
78
N
N
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
O
N
84
N
F
N
85
R
C
N
86
N
C
N
87
S
C
N
88
R
C
N
89
N
O
N
90
N
O
N
91
N
C
N
92
N
O
N
93
N
P
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
doub
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
doub
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
sing
Y
61
N
doub
N
62
N
sing
Y
63
N
sing
N
64
N
sing
Y
65
N
doub
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
doub
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
0305-1048
17
911
923
10.1093/nar/17.3.911
2922276
Effects of 5-fluorouracil/guanine wobble base pairs in Z-DNA: molecular and crystal structure of d(CGCGFG).
1989
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
85
1735
1739
5-Fluorodeoxyuridine as an Alternative to the Synthesis of Mixed Hybridization Probes for the Detection of Specific Gene Sequences
1988
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
256
8885
8888
5-Fluoro-2'-Deoxyuridine Incorporation in L1210 DNA
1981
10.2210/pdb1dnf/pdb
pdb_00001dnf
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.00
1
DIFFRACTOMETER
NICOLET P3
SINGLE WAVELENGTH
M
x-ray
1
1.0
1829.180
DNA (5'-D(*CP*GP*CP*GP*(UFP)P*G)-3')
2
syn
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
58
nat
water
no
yes
(DC)(DG)(DC)(DG)(UFP)(DG)
CGCGNG
A,B
polydeoxyribonucleotide
n
n
n
n
n
n
1.68
26.69
VAPOR DIFFUSION
9.00
pH 9.00, VAPOR DIFFUSION
WATER
1
MPD
1
BIS-TRIS-PROPANE
1
MGCL2
1
SPERMINE
1
WATER
2
MPD
2
5.622
1
19
A
1
B
12
2.206
A_DC1:DG12_B
1
4.267
-0.320
0.062
-0.128
2.663
1
19
A
3
B
10
0.445
A_DC3:DG10_B
2
-0.518
-0.326
0.141
-0.132
-1.465
1
19
A
4
B
9
3.518
A_DG4:DC9_B
3
1.348
0.166
0.178
-0.172
-4.906
1
19
A
6
B
7
0.256
A_DG6:DC7_B
4
-5.202
0.165
0.299
-0.112
5.762
-10.178
A
A
3
4
28.031
B
B
10
9
3.740
-4.773
-0.059
5.283
AA_DC3DG4:DC9DG10_BB
1
-0.738
-4.333
-8.961
-16.453
-2.393
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
1990-10-15
1
1
2008-05-22
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.value
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
BNL
Y
BNL
1988-12-12
REL
MG
MAGNESIUM ION
HOH
water
MG
13
2
MG
MG
13
A
HOH
15
3
HOH
HOH
15
A
HOH
16
3
HOH
HOH
16
A
HOH
19
3
HOH
HOH
19
A
HOH
21
3
HOH
HOH
21
A
HOH
23
3
HOH
HOH
23
A
HOH
24
3
HOH
HOH
24
A
HOH
27
3
HOH
HOH
27
A
HOH
28
3
HOH
HOH
28
A
HOH
31
3
HOH
HOH
31
A
HOH
40
3
HOH
HOH
40
A
HOH
41
3
HOH
HOH
41
A
HOH
44
3
HOH
HOH
44
A
HOH
46
3
HOH
HOH
46
A
HOH
54
3
HOH
HOH
54
A
HOH
59
3
HOH
HOH
59
A
HOH
63
3
HOH
HOH
63
A
HOH
66
3
HOH
HOH
66
A
HOH
14
3
HOH
HOH
14
B
HOH
17
3
HOH
HOH
17
B
HOH
18
3
HOH
HOH
18
B
HOH
20
3
HOH
HOH
20
B
HOH
22
3
HOH
HOH
22
B
HOH
25
3
HOH
HOH
25
B
HOH
26
3
HOH
HOH
26
B
HOH
29
3
HOH
HOH
29
B
HOH
30
3
HOH
HOH
30
B
HOH
32
3
HOH
HOH
32
B
HOH
33
3
HOH
HOH
33
B
HOH
34
3
HOH
HOH
34
B
HOH
35
3
HOH
HOH
35
B
HOH
36
3
HOH
HOH
36
B
HOH
37
3
HOH
HOH
37
B
HOH
38
3
HOH
HOH
38
B
HOH
39
3
HOH
HOH
39
B
HOH
42
3
HOH
HOH
42
B
HOH
43
3
HOH
HOH
43
B
HOH
45
3
HOH
HOH
45
B
HOH
47
3
HOH
HOH
47
B
HOH
48
3
HOH
HOH
48
B
HOH
49
3
HOH
HOH
49
B
HOH
50
3
HOH
HOH
50
B
HOH
51
3
HOH
HOH
51
B
HOH
52
3
HOH
HOH
52
B
HOH
53
3
HOH
HOH
53
B
HOH
55
3
HOH
HOH
55
B
HOH
56
3
HOH
HOH
56
B
HOH
57
3
HOH
HOH
57
B
HOH
58
3
HOH
HOH
58
B
HOH
60
3
HOH
HOH
60
B
HOH
61
3
HOH
HOH
61
B
HOH
62
3
HOH
HOH
62
B
HOH
64
3
HOH
HOH
64
B
HOH
65
3
HOH
HOH
65
B
HOH
67
3
HOH
HOH
67
B
HOH
68
3
HOH
HOH
68
B
HOH
69
3
HOH
HOH
69
B
HOH
70
3
HOH
HOH
70
B
HOH
71
3
HOH
HOH
71
B
C
1
n
1
DC
1
A
G
2
n
2
DG
2
A
C
3
n
3
DC
3
A
G
4
n
4
DG
4
A
+U
5
n
5
UFP
5
A
G
6
n
6
DG
6
A
C
7
n
1
DC
7
B
G
8
n
2
DG
8
B
C
9
n
3
DC
9
B
G
10
n
4
DG
10
B
+U
11
n
5
UFP
11
B
G
12
n
6
DG
12
B
author_defined_assembly
2
dimeric
A
HOH
15
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
A
HOH
16
D
O
HOH
1_555
89.2
A
HOH
15
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
A
HOH
19
D
O
HOH
4_456
98.1
A
HOH
16
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
A
HOH
19
D
O
HOH
4_456
91.7
A
HOH
15
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
B
HOH
14
E
O
HOH
4_456
176.0
A
HOH
16
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
B
HOH
14
E
O
HOH
4_456
89.5
A
HOH
19
D
O
HOH
4_456
A
MG
13
C
MG
MG
1_555
B
HOH
14
E
O
HOH
4_456
85.7
A
HOH
15
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
B
HOH
17
E
O
HOH
4_456
90.2
A
HOH
16
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
B
HOH
17
E
O
HOH
4_456
178.3
A
HOH
19
D
O
HOH
4_456
A
MG
13
C
MG
MG
1_555
B
HOH
17
E
O
HOH
4_456
89.9
B
HOH
14
E
O
HOH
4_456
A
MG
13
C
MG
MG
1_555
B
HOH
17
E
O
HOH
4_456
91.0
A
HOH
15
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
B
HOH
18
E
O
HOH
4_456
88.6
A
HOH
16
D
O
HOH
1_555
A
MG
13
C
MG
MG
1_555
B
HOH
18
E
O
HOH
4_456
88.6
A
HOH
19
D
O
HOH
4_456
A
MG
13
C
MG
MG
1_555
B
HOH
18
E
O
HOH
4_456
173.2
B
HOH
14
E
O
HOH
4_456
A
MG
13
C
MG
MG
1_555
B
HOH
18
E
O
HOH
4_456
87.6
B
HOH
17
E
O
HOH
4_456
A
MG
13
C
MG
MG
1_555
B
HOH
18
E
O
HOH
4_456
89.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
B
B
O
O
HOH
HOH
47
71
1.74
1
3.66
0.30
108.30
111.96
A
A
A
O4'
C1'
N1
DC
DC
DC
1
1
1
N
1
9.19
0.60
118.90
128.09
A
A
A
N1
C2
O2
DC
DC
DC
1
1
1
N
1
-7.80
0.70
121.90
114.10
A
A
A
N3
C2
O2
DC
DC
DC
1
1
1
N
1
-5.71
0.80
109.40
103.69
A
A
A
O5'
C5'
C4'
DG
DG
DG
2
2
2
N
1
-4.38
0.60
125.10
120.72
A
A
A
C6
N1
C2
DG
DG
DG
2
2
2
N
1
5.36
0.50
111.90
117.26
A
A
A
C2
N3
C4
DG
DG
DG
2
2
2
N
1
-3.92
0.50
128.60
124.68
A
A
A
N3
C4
C5
DG
DG
DG
2
2
2
N
1
4.39
0.50
111.50
115.89
A
A
A
C5
C6
N1
DG
DG
DG
2
2
2
N
1
-5.50
0.60
119.90
114.40
A
A
A
N1
C6
O6
DG
DG
DG
2
2
2
N
1
-12.70
0.80
109.40
96.70
A
A
A
O5'
C5'
C4'
DG
DG
DG
4
4
4
N
1
-2.42
0.40
106.40
103.98
A
A
A
C8
N9
C4
DG
DG
DG
4
4
4
N
1
6.74
0.90
116.20
122.94
A
A
A
N1
C2
N2
DG
DG
DG
4
4
4
N
1
-8.22
0.70
119.90
111.68
A
A
A
N3
C2
N2
DG
DG
DG
4
4
4
N
1
8.91
1.20
119.70
128.61
A
A
A
C3'
O3'
P
DG
DG
UFP
4
4
5
Y
1
-7.79
0.60
125.10
117.31
A
A
A
C6
N1
C2
DG
DG
DG
6
6
6
N
1
5.32
0.60
123.90
129.22
A
A
A
N1
C2
N3
DG
DG
DG
6
6
6
N
1
3.82
0.50
111.50
115.32
A
A
A
C5
C6
N1
DG
DG
DG
6
6
6
N
1
-5.05
0.60
119.90
114.85
A
A
A
N1
C6
O6
DG
DG
DG
6
6
6
N
1
5.29
0.40
120.30
125.59
B
B
B
C6
N1
C2
DC
DC
DC
7
7
7
N
1
-4.55
0.70
119.20
114.65
B
B
B
N1
C2
N3
DC
DC
DC
7
7
7
N
1
5.15
0.60
118.90
124.05
B
B
B
N1
C2
O2
DC
DC
DC
7
7
7
N
1
8.25
1.20
119.70
127.95
B
B
B
C3'
O3'
P
DC
DC
DG
7
7
8
Y
1
-4.67
0.60
123.90
119.23
B
B
B
N1
C2
N3
DG
DG
DG
8
8
8
N
1
6.95
0.50
111.90
118.85
B
B
B
C2
N3
C4
DG
DG
DG
8
8
8
N
1
-3.96
0.50
128.60
124.64
B
B
B
N3
C4
C5
DG
DG
DG
8
8
8
N
1
5.63
0.50
111.50
117.13
B
B
B
C5
C6
N1
DG
DG
DG
8
8
8
N
1
4.99
0.60
126.00
130.99
B
B
B
N3
C4
N9
DG
DG
DG
8
8
8
N
1
4.25
0.60
130.40
134.65
B
B
B
C6
C5
N7
DG
DG
DG
8
8
8
N
1
5.65
0.90
116.20
121.85
B
B
B
N1
C2
N2
DG
DG
DG
8
8
8
N
1
-6.04
0.60
119.90
113.86
B
B
B
N1
C6
O6
DG
DG
DG
8
8
8
N
1
13.24
1.20
119.70
132.94
B
B
B
C3'
O3'
P
DG
DG
DC
8
8
9
Y
1
17.78
1.90
104.00
121.78
B
B
B
O3'
P
O5'
DG
DC
DC
8
9
9
Y
1
10.48
1.10
110.50
120.98
B
B
B
O3'
P
OP1
DG
DC
DC
8
9
9
Y
1
-28.51
1.50
119.60
91.09
B
B
B
OP1
P
OP2
DC
DC
DC
9
9
9
N
1
-14.75
0.90
105.70
90.95
B
B
B
O5'
P
OP2
DC
DC
DC
9
9
9
N
1
-5.55
0.80
109.40
103.85
B
B
B
O5'
C5'
C4'
DC
DC
DC
9
9
9
N
1
-4.87
0.80
105.90
101.03
B
B
B
O4'
C1'
C2'
DC
DC
DC
9
9
9
N
1
3.28
0.30
108.30
111.58
B
B
B
O4'
C1'
N1
DC
DC
DC
9
9
9
N
1
-2.64
0.40
120.30
117.66
B
B
B
C6
N1
C2
DC
DC
DC
9
9
9
N
1
-3.08
0.40
121.90
118.82
B
B
B
N3
C4
C5
DC
DC
DC
9
9
9
N
1
-5.76
0.80
102.40
96.64
B
B
B
C3'
C2'
C1'
DG
DG
DG
12
12
12
N
1
2.23
0.30
108.30
110.53
B
B
B
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
3.54
0.50
111.90
115.44
B
B
B
C2
N3
C4
DG
DG
DG
12
12
12
N
1
4.10
0.50
111.50
115.60
B
B
B
C5
C6
N1
DG
DG
DG
12
12
12
N
1
3.09
0.40
110.80
113.89
B
B
B
C4
C5
N7
DG
DG
DG
12
12
12
N
1
3.96
0.60
126.00
129.96
B
B
B
N3
C4
N9
DG
DG
DG
12
12
12
N
1
-3.73
0.60
128.60
124.87
B
B
B
C5
C6
O6
DG
DG
DG
12
12
12
N
1
A
A
O4'
C4'
DG
DG
2
2
-0.060
0.010
1.446
1.386
N
1
A
A
O4'
C1'
DC
DC
3
3
0.077
0.011
1.420
1.497
N
1
A
A
O4'
C4'
DC
DC
3
3
-0.061
0.010
1.446
1.385
N
1
A
A
O3'
C3'
DC
DC
3
3
-0.037
0.006
1.419
1.382
N
1
A
A
N3
C4
DC
DC
3
3
0.052
0.007
1.335
1.387
N
1
A
A
C2'
C1'
DG
DG
4
4
-0.066
0.010
1.518
1.452
N
1
A
A
O4'
C1'
DG
DG
4
4
0.071
0.011
1.420
1.491
N
1
A
A
O4'
C4'
DG
DG
4
4
-0.083
0.010
1.446
1.363
N
1
A
A
N1
C2
DG
DG
4
4
-0.061
0.008
1.373
1.312
N
1
A
A
N7
C8
DG
DG
4
4
-0.054
0.006
1.305
1.251
N
1
A
A
O4'
C4'
DG
DG
6
6
-0.061
0.010
1.446
1.385
N
1
A
A
N7
C8
DG
DG
6
6
-0.045
0.006
1.305
1.260
N
1
B
B
C2
O2
DC
DC
7
7
-0.084
0.009
1.240
1.156
N
1
B
B
C5
C6
DC
DC
7
7
0.069
0.008
1.339
1.408
N
1
B
B
C3'
C2'
DG
DG
8
8
-0.059
0.008
1.516
1.457
N
1
B
B
N3
C4
DG
DG
8
8
-0.064
0.007
1.350
1.286
N
1
B
B
C4
C5
DG
DG
8
8
0.047
0.007
1.379
1.426
N
1
B
B
C6
N1
DG
DG
8
8
-0.044
0.007
1.391
1.347
N
1
B
B
C6
O6
DG
DG
8
8
0.063
0.009
1.237
1.300
N
1
B
B
O3'
P
DG
DC
8
9
-0.149
0.012
1.607
1.458
Y
1
B
B
P
OP2
DC
DC
9
9
0.296
0.017
1.485
1.781
N
1
B
B
N1
C6
DC
DC
9
9
0.044
0.006
1.367
1.411
N
1
B
B
O4'
C4'
DG
DG
10
10
-0.082
0.010
1.446
1.364
N
1
B
B
N1
C2
DG
DG
10
10
-0.053
0.008
1.373
1.320
N
1
B
B
O3'
C3'
DG
DG
12
12
0.091
0.013
1.435
1.526
N
1
B
B
C6
N1
DG
DG
12
12
-0.043
0.007
1.391
1.348
N
1
B
A
OP2
O
DC
HOH
9
54
2.01
1_555
2_665
1
A
B
O
O
HOH
HOH
31
42
2.14
1_555
4_556
0.172
1.500
2770
1
2.000
TR
isotropic
TR
isotropic
1.500
58
301
3
240
0
0.028
0.037
fix
fix
1.500
1DNF
2770
2.000
1
refinement
NUCLSQ
EFFECTS OF 5-FLUOROURACIL/GUANINE WOBBLE BASE PAIRS IN Z-DNA. MOLECULAR AND CRYSTAL STRUCTURE OF D(CGCGFG)
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
covale
1.626
both
A
DG
4
A
O3'
DG
4
1_555
A
UFP
5
A
P
UFP
5
1_555
covale
1.577
one
A
UFP
5
A
O3'
UFP
5
1_555
A
DG
6
A
P
DG
6
1_555
covale
1.593
both
B
DG
10
B
O3'
DG
4
1_555
B
UFP
11
B
P
UFP
5
1_555
covale
1.542
one
B
UFP
11
B
O3'
UFP
5
1_555
B
DG
12
B
P
DG
6
1_555
metalc
1.942
A
MG
13
C
MG
MG
1_555
A
HOH
15
D
O
HOH
1_555
metalc
2.038
A
MG
13
C
MG
MG
1_555
A
HOH
16
D
O
HOH
1_555
metalc
1.921
A
MG
13
C
MG
MG
1_555
A
HOH
19
D
O
HOH
4_456
metalc
2.070
A
MG
13
C
MG
MG
1_555
B
HOH
14
E
O
HOH
4_456
metalc
1.959
A
MG
13
C
MG
MG
1_555
B
HOH
17
E
O
HOH
4_456
metalc
2.035
A
MG
13
C
MG
MG
1_555
B
HOH
18
E
O
HOH
4_456
hydrog
WATSON-CRICK
A
DC
1
A
N3
DC
1
1_555
B
DG
12
B
N1
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
N4
DC
1
1_555
B
DG
12
B
O6
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
1
A
O2
DC
1
1_555
B
DG
12
B
N2
DG
6
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N3
DC
3
1_555
B
DG
10
B
N1
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
N4
DC
3
1_555
B
DG
10
B
O6
DG
4
1_555
hydrog
WATSON-CRICK
A
DC
3
A
O2
DC
3
1_555
B
DG
10
B
N2
DG
4
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N1
DG
4
1_555
B
DC
9
B
N3
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
N2
DG
4
1_555
B
DC
9
B
O2
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
4
A
O6
DG
4
1_555
B
DC
9
B
N4
DC
3
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N1
DG
6
1_555
B
DC
7
B
N3
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
N2
DG
6
1_555
B
DC
7
B
O2
DC
1
1_555
hydrog
WATSON-CRICK
A
DG
6
A
O6
DG
6
1_555
B
DC
7
B
N4
DC
1
1_555
DNA
Z-DNA, DOUBLE HELIX, MODIFIED, MISMATCHED, DNA
1DNF
PDB
1
1DNF
1
6
1DNF
1
6
1DNF
A
1
1
6
7
12
1DNF
7
12
1DNF
B
1
1
6
BINDING SITE FOR RESIDUE MG A 13
A
MG
13
Software
6
A
HOH
15
D
HOH
6
1_555
A
HOH
16
D
HOH
6
1_555
A
HOH
19
D
HOH
6
4_456
B
HOH
14
E
HOH
6
4_456
B
HOH
17
E
HOH
6
4_456
B
HOH
18
E
HOH
6
4_456
19
P 21 21 21