0.041322 0.000000 0.000000 0.000000 0.023443 0.000000 0.000000 0.000000 0.020278 0.00000 0.00000 0.00000 Robinson, H. Gao, Y.-G. Sanishvili, R. Joachimiak, A. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 24.200 42.656 49.315 C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C N 14 N N N 15 N C N 16 N O N 17 N N N 18 N C N 19 N N N 20 N C N 21 N C N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N O N 37 N P N 38 N O N 39 N O N 40 N O N 41 N C N 42 R C N 43 N O N 44 S C N 45 N O N 46 N C N 47 R C Y 48 N N Y 49 N C Y 50 N N Y 51 N C Y 52 N C N 53 N N Y 54 N N Y 55 N C Y 56 N N Y 57 N C N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N O N 73 N P N 74 N O N 75 N O N 76 N O N 77 N C N 78 R C N 79 N O N 80 S C N 81 N O N 82 N C N 83 R C N 84 N N N 85 N C N 86 N O N 87 N N N 88 N C N 89 N N N 90 N C N 91 N C N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N O N 107 N P N 108 N O N 109 N O N 110 N O N 111 N C N 112 R C N 113 N O N 114 S C N 115 N O N 116 N C N 117 R C Y 118 N N Y 119 N C Y 120 N N Y 121 N C N 122 N C N 123 N O N 124 N N N 125 N C N 126 N N N 127 N N Y 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N O N 144 N P N 145 N O N 146 N O N 147 N O N 148 N C N 149 R C N 150 N O N 151 S C N 152 N O N 153 N C N 154 R C N 155 N N N 156 N C N 157 N O N 158 N N N 159 N C N 160 N O N 161 N C N 162 N C N 163 N C N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N O N 180 N P N 181 N O N 182 N O N 183 N O N 184 N C N 185 R C N 186 N O N 187 S C N 188 N O N 189 R C N 190 N O N 191 R C Y 192 N N Y 193 N C Y 194 N N Y 195 N C N 196 N C N 197 N O N 198 N N N 199 N C N 200 N N N 201 N N Y 202 N C N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N O N 218 N H N 219 N H N 220 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N doub N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing Y 60 N sing Y 61 N sing Y 62 N doub N 63 N sing Y 64 N sing Y 65 N sing Y 66 N doub N 67 N sing Y 68 N doub N 69 N sing N 70 N sing Y 71 N sing Y 72 N doub N 73 N sing Y 74 N sing N 75 N sing N 76 N sing N 77 N doub N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N doub N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing Y 133 N sing Y 134 N sing Y 135 N doub N 136 N sing Y 137 N sing N 138 N sing Y 139 N doub N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N doub N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing Y 210 N sing Y 211 N sing Y 212 N doub N 213 N sing Y 214 N sing N 215 N sing Y 216 N doub N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 28 1760 1766 10.1093/nar/28.8.1760 10734195 Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes. 2000 10.2210/pdb1dno/pdb pdb_00001dno 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 110 1 CCD 1999-11-16 CUSTOM-MADE SINGLE WAVELENGTH M x-ray 1 1.03321 1.0 19-ID APS 1.03321 SYNCHROTRON APS BEAMLINE 19-ID 3093.005 DNA/RNA (5'-R(*GP*CP*GP)-D(*TP*AP*TP*AP*CP*GP*C)-3') 2 syn polymer 24.305 MAGNESIUM ION 4 syn non-polymer 18.015 water 120 nat water no no GCG(DT)(DA)(DT)(DA)(DC)(DG)(DC) GCGTATACGC A,B polydeoxyribonucleotide/polyribonucleotide hybrid n n n n n n n n n n 1 1.87 34.0 VAPOR DIFFUSION, SITTING DROP 6.5 2-MPD, CACODYLATE, SPERMINE, MGCL2, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 CACODYLATE 1 SPERMINE 1 MGCL2 1 MPD 1 MPD 2 3.180 1 19 A 1 B 20 -3.804 A_G1:DC20_B 1 -6.173 -0.092 0.113 -0.112 4.319 1 19 A 2 B 19 1.118 A_C2:DG19_B 2 -13.011 0.205 -0.019 -0.138 -11.408 1 19 A 3 B 18 0.375 A_G3:DC18_B 3 -15.384 -0.217 -0.054 -0.090 -4.502 1 20 A 4 B 17 -0.917 A_DT4:DA17_B 4 -9.488 -0.129 0.170 -0.092 1.052 1 20 A 5 B 16 3.360 A_DA5:DT16_B 5 -15.087 -0.020 0.186 -0.109 8.772 1 20 A 6 B 15 12.181 A_DT6:DA15_B 6 -14.410 0.032 0.270 0.005 10.106 1 20 A 7 B 14 5.009 A_DA7:DT14_B 7 -12.218 -0.039 0.118 -0.085 10.667 1 19 A 8 B 13 0.426 A_DC8:G13_B 8 -18.872 0.164 -0.132 -0.162 -2.757 1 19 A 9 B 12 0.504 A_DG9:C12_B 9 -13.106 -0.135 0.156 -0.225 -2.976 1 19 A 10 B 11 -2.813 A_DC10:G11_B 10 -0.345 0.270 0.220 -0.090 3.124 38.380 A A 1 2 3.231 B B 20 19 3.205 2.123 0.542 -1.718 AA_G1C2:DG19DC20_BB 1 1.218 -1.854 38.305 -2.870 -0.677 2.065 32.468 A A 2 3 30.499 B B 19 18 3.421 16.303 -0.594 -1.913 AA_C2G3:DC18DG19_BB 2 -1.902 3.558 28.110 -6.005 0.762 2.960 32.086 A A 3 4 8.603 B B 18 17 3.125 4.731 -0.502 -1.156 AA_G3DT4:DA17DC18_BB 3 -3.139 5.707 31.593 -2.889 0.380 2.244 32.554 A A 4 5 25.507 B B 17 16 3.007 13.861 0.450 -1.212 AA_DT4DA5:DT16DA17_BB 4 1.250 -2.300 29.502 -4.205 -0.619 2.716 33.668 A A 5 6 14.407 B B 16 15 3.092 8.264 0.897 -1.214 AA_DA5DT6:DA15DT16_BB 5 0.126 -0.219 32.666 -3.310 -1.531 2.183 33.548 A A 6 7 29.002 B B 15 14 3.062 16.087 -0.775 -1.114 AA_DT6DA7:DT14DA15_BB 6 -0.056 0.102 29.537 -4.192 1.335 3.033 32.150 A A 7 8 9.113 B B 14 13 3.283 5.024 -0.351 -1.206 AA_DA7DC8:G13DT14_BB 7 2.066 -3.748 31.700 -3.053 0.993 2.626 34.691 A A 8 9 23.332 B B 13 12 3.475 13.535 -0.124 -1.526 AA_DC8DG9:C12G13_BB 8 -3.774 6.505 31.798 -4.586 -0.356 3.402 36.020 A A 9 10 -0.662 B B 12 11 3.357 -0.409 0.453 -1.894 AA_DG9DC10:G11C12_BB 9 2.779 -4.498 35.914 -3.003 -0.325 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_keywords struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations Structure summary 1 0 2000-04-10 1 1 2008-04-27 1 2 2011-07-13 1 3 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_keywords.text _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 1999-12-16 REL REL MG MAGNESIUM ION HOH water MO6 24 2 MG MG 24 A MO6 21 2 MG MG 21 B MO6 22 2 MG MG 22 B MO6 23 2 MG MG 23 B HOH 102 3 HOH HOH 102 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 107 3 HOH HOH 107 A HOH 111 3 HOH HOH 111 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 117 3 HOH HOH 117 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 125 3 HOH HOH 125 A HOH 126 3 HOH HOH 126 A HOH 127 3 HOH HOH 127 A HOH 128 3 HOH HOH 128 A HOH 130 3 HOH HOH 130 A HOH 131 3 HOH HOH 131 A HOH 136 3 HOH HOH 136 A HOH 137 3 HOH HOH 137 A HOH 139 3 HOH HOH 139 A HOH 141 3 HOH HOH 141 A HOH 145 3 HOH HOH 145 A HOH 150 3 HOH HOH 150 A HOH 154 3 HOH HOH 154 A HOH 156 3 HOH HOH 156 A HOH 158 3 HOH HOH 158 A HOH 161 3 HOH HOH 161 A HOH 164 3 HOH HOH 164 A HOH 172 3 HOH HOH 172 A HOH 173 3 HOH HOH 173 A HOH 177 3 HOH HOH 177 A HOH 178 3 HOH HOH 178 A HOH 179 3 HOH HOH 179 A HOH 183 3 HOH HOH 183 A HOH 184 3 HOH HOH 184 A HOH 188 3 HOH HOH 188 A HOH 189 3 HOH HOH 189 A HOH 190 3 HOH HOH 190 A HOH 192 3 HOH HOH 192 A HOH 193 3 HOH HOH 193 A MO6 22 3 HOH HOH 205 A MO6 24 3 HOH HOH 215 A MO6 24 3 HOH HOH 216 A MO6 24 3 HOH HOH 217 A MO6 24 3 HOH HOH 218 A HOH 101 3 HOH HOH 101 B HOH 103 3 HOH HOH 103 B HOH 106 3 HOH HOH 106 B HOH 108 3 HOH HOH 108 B HOH 109 3 HOH HOH 109 B HOH 110 3 HOH HOH 110 B HOH 112 3 HOH HOH 112 B HOH 115 3 HOH HOH 115 B HOH 116 3 HOH HOH 116 B HOH 118 3 HOH HOH 118 B HOH 119 3 HOH HOH 119 B HOH 124 3 HOH HOH 124 B HOH 129 3 HOH HOH 129 B HOH 132 3 HOH HOH 132 B HOH 133 3 HOH HOH 133 B HOH 134 3 HOH HOH 134 B HOH 135 3 HOH HOH 135 B HOH 138 3 HOH HOH 138 B HOH 140 3 HOH HOH 140 B HOH 142 3 HOH HOH 142 B HOH 143 3 HOH HOH 143 B HOH 144 3 HOH HOH 144 B HOH 146 3 HOH HOH 146 B HOH 147 3 HOH HOH 147 B HOH 148 3 HOH HOH 148 B HOH 149 3 HOH HOH 149 B HOH 151 3 HOH HOH 151 B HOH 152 3 HOH HOH 152 B HOH 153 3 HOH HOH 153 B HOH 155 3 HOH HOH 155 B HOH 157 3 HOH HOH 157 B HOH 159 3 HOH HOH 159 B HOH 160 3 HOH HOH 160 B HOH 162 3 HOH HOH 162 B HOH 163 3 HOH HOH 163 B HOH 165 3 HOH HOH 165 B HOH 166 3 HOH HOH 166 B HOH 167 3 HOH HOH 167 B HOH 168 3 HOH HOH 168 B HOH 169 3 HOH HOH 169 B HOH 170 3 HOH HOH 170 B HOH 171 3 HOH HOH 171 B HOH 174 3 HOH HOH 174 B HOH 175 3 HOH HOH 175 B HOH 176 3 HOH HOH 176 B HOH 180 3 HOH HOH 180 B HOH 181 3 HOH HOH 181 B HOH 182 3 HOH HOH 182 B HOH 185 3 HOH HOH 185 B HOH 186 3 HOH HOH 186 B HOH 187 3 HOH HOH 187 B HOH 191 3 HOH HOH 191 B HOH 194 3 HOH HOH 194 B HOH 195 3 HOH HOH 195 B HOH 196 3 HOH HOH 196 B MO6 21 3 HOH HOH 197 B MO6 21 3 HOH HOH 198 B MO6 21 3 HOH HOH 199 B MO6 21 3 HOH HOH 200 B MO6 21 3 HOH HOH 201 B MO6 21 3 HOH HOH 202 B MO6 22 3 HOH HOH 203 B MO6 22 3 HOH HOH 204 B MO6 22 3 HOH HOH 206 B MO6 22 3 HOH HOH 207 B MO6 22 3 HOH HOH 208 B MO6 23 3 HOH HOH 209 B MO6 23 3 HOH HOH 210 B MO6 23 3 HOH HOH 211 B MO6 23 3 HOH HOH 212 B MO6 23 3 HOH HOH 213 B MO6 23 3 HOH HOH 214 B MO6 24 3 HOH HOH 219 B MO6 24 3 HOH HOH 220 B G 1 n 1 G 1 A C 2 n 2 C 2 A G 3 n 3 G 3 A T 4 n 4 DT 4 A A 5 n 5 DA 5 A T 6 n 6 DT 6 A A 7 n 7 DA 7 A C 8 n 8 DC 8 A G 9 n 9 DG 9 A C 10 n 10 DC 10 A G 11 n 1 G 11 B C 12 n 2 C 12 B G 13 n 3 G 13 B T 14 n 4 DT 14 B A 15 n 5 DA 15 B T 16 n 6 DT 16 B A 17 n 7 DA 17 B C 18 n 8 DC 18 B G 19 n 9 DG 19 B C 20 n 10 DC 20 B 0.193 0.191 0.239 507 5 10217 author_defined_assembly 2 dimeric A HOH 215 G O HOH 1_555 A MG 24 C MG MG 1_555 A HOH 216 G O HOH 1_555 178.0 A HOH 215 G O HOH 1_555 A MG 24 C MG MG 1_555 A HOH 217 G O HOH 1_555 89.7 A HOH 216 G O HOH 1_555 A MG 24 C MG MG 1_555 A HOH 217 G O HOH 1_555 91.4 A HOH 215 G O HOH 1_555 A MG 24 C MG MG 1_555 A HOH 218 G O HOH 1_555 88.8 A HOH 216 G O HOH 1_555 A MG 24 C MG MG 1_555 A HOH 218 G O HOH 1_555 89.4 A HOH 217 G O HOH 1_555 A MG 24 C MG MG 1_555 A HOH 218 G O HOH 1_555 90.7 A HOH 215 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 219 H O HOH 1_555 91.2 A HOH 216 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 219 H O HOH 1_555 87.8 A HOH 217 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 219 H O HOH 1_555 177.8 A HOH 218 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 219 H O HOH 1_555 91.3 A HOH 215 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 220 H O HOH 1_555 93.0 A HOH 216 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 220 H O HOH 1_555 88.8 A HOH 217 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 220 H O HOH 1_555 86.8 A HOH 218 G O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 220 H O HOH 1_555 176.8 B HOH 219 H O HOH 1_555 A MG 24 C MG MG 1_555 B HOH 220 H O HOH 1_555 91.2 A HOH 205 G O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 203 H O HOH 1_555 91.4 A HOH 205 G O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 204 H O HOH 1_555 89.2 B HOH 203 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 204 H O HOH 1_555 176.8 A HOH 205 G O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 206 H O HOH 1_555 90.0 B HOH 203 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 206 H O HOH 1_555 88.1 B HOH 204 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 206 H O HOH 1_555 88.7 A HOH 205 G O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 207 H O HOH 1_555 176.6 B HOH 203 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 207 H O HOH 1_555 91.3 B HOH 204 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 207 H O HOH 1_555 88.2 B HOH 206 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 207 H O HOH 1_555 92.1 A HOH 205 G O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 208 H O HOH 1_555 89.8 B HOH 203 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 208 H O HOH 1_555 89.9 B HOH 204 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 208 H O HOH 1_555 93.2 B HOH 206 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 208 H O HOH 1_555 178.0 B HOH 207 H O HOH 1_555 B MG 22 E MG MG 1_555 B HOH 208 H O HOH 1_555 88.2 B HOH 197 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 198 H O HOH 1_555 178.7 B HOH 197 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 199 H O HOH 1_555 88.4 B HOH 198 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 199 H O HOH 1_555 92.6 B HOH 197 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 200 H O HOH 1_555 90.0 B HOH 198 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 200 H O HOH 1_555 89.2 B HOH 199 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 200 H O HOH 1_555 90.1 B HOH 197 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 201 H O HOH 1_555 88.7 B HOH 198 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 201 H O HOH 1_555 90.3 B HOH 199 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 201 H O HOH 1_555 176.9 B HOH 200 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 201 H O HOH 1_555 90.9 B HOH 197 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 202 H O HOH 1_555 89.3 B HOH 198 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 202 H O HOH 1_555 91.4 B HOH 199 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 202 H O HOH 1_555 88.4 B HOH 200 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 202 H O HOH 1_555 178.4 B HOH 201 H O HOH 1_555 B MG 21 D MG MG 1_555 B HOH 202 H O HOH 1_555 90.6 B HOH 209 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 210 H O HOH 1_555 177.6 B HOH 209 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 211 H O HOH 1_555 88.8 B HOH 210 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 211 H O HOH 1_555 89.3 B HOH 209 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 212 H O HOH 1_555 88.3 B HOH 210 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 212 H O HOH 1_555 90.2 B HOH 211 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 212 H O HOH 1_555 89.5 B HOH 209 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 213 H O HOH 1_555 89.8 B HOH 210 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 213 H O HOH 1_555 92.0 B HOH 211 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 213 H O HOH 1_555 178.5 B HOH 212 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 213 H O HOH 1_555 89.8 B HOH 209 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 214 H O HOH 1_555 90.0 B HOH 210 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 214 H O HOH 1_555 91.4 B HOH 211 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 214 H O HOH 1_555 89.5 B HOH 212 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 214 H O HOH 1_555 178.1 B HOH 213 H O HOH 1_555 B MG 23 F MG MG 1_555 B HOH 214 H O HOH 1_555 91.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A G 3 0.068 SIDE CHAIN 1 A DA 7 0.063 SIDE CHAIN 1 B G 11 0.073 SIDE CHAIN 1 B DC 20 0.066 SIDE CHAIN 1 -4.46 0.70 109.70 105.24 A A A C1' O4' C4' C C C 2 2 2 N 1 -2.50 0.40 104.50 102.00 A A A O4' C4' C3' DT DT DT 4 4 4 N 1 3.83 0.60 118.60 122.43 A A A C6 N1 C2 DA DA DA 5 5 5 N 1 3.65 0.60 118.60 122.25 A A A C6 N1 C2 DA DA DA 7 7 7 N 1 -3.06 0.50 117.70 114.64 A A A C5 C6 N1 DA DA DA 7 7 7 N 1 5.29 0.80 123.70 128.99 A A A C5 C6 N6 DA DA DA 7 7 7 N 1 -3.17 0.40 104.50 101.33 A A A O4' C4' C3' DC DC DC 8 8 8 N 1 -3.86 0.40 104.50 100.64 A A A O4' C4' C3' DC DC DC 10 10 10 N 1 2.87 0.30 108.30 111.17 A A A O4' C1' N1 DC DC DC 10 10 10 N 1 4.10 0.40 120.30 124.40 A A A C6 N1 C2 DC DC DC 10 10 10 N 1 -3.83 0.50 121.00 117.17 A A A C5 C6 N1 DC DC DC 10 10 10 N 1 -5.02 0.70 120.20 115.18 A A A C5 C4 N4 DC DC DC 10 10 10 N 1 -3.20 0.40 120.30 117.10 B B B C6 N1 C2 C C C 12 12 12 N 1 5.06 0.50 121.00 126.06 B B B C5 C6 N1 C C C 12 12 12 N 1 5.41 0.90 109.80 115.21 B B B C5' C4' O4' G G G 13 13 13 N 1 -3.71 0.60 119.90 116.19 B B B N1 C6 O6 G G G 13 13 13 N 1 3.92 0.60 128.60 132.52 B B B C5 C6 O6 G G G 13 13 13 N 1 -2.41 0.40 104.50 102.09 B B B O4' C4' C3' DA DA DA 15 15 15 N 1 -2.82 0.40 104.50 101.68 B B B O4' C4' C3' DT DT DT 16 16 16 N 1 -2.67 0.40 104.50 101.83 B B B O4' C4' C3' DA DA DA 17 17 17 N 1 -3.07 0.40 104.50 101.43 B B B O4' C4' C3' DC DC DC 18 18 18 N 1 1.89 0.30 108.30 110.19 B B B O4' C1' N1 DC DC DC 18 18 18 N 0.242 0.193 0.195 0.193 1.40 20.0 2139 519 10433 10433 1830 5 98.7 RANDOM 1 A POSTERIORI 0.0 0.0 MOLECULAR REPLACEMENT NDB ID ADJ043 G.PARKINSON ET AL. SHELXL SWAT OPTION 0 0 534 1.40 20.0 96 534 28 410 0 0.011 0.027 0.070 0.006 0.032 22.2 1.40 20.0 1DNO 10433 10433 0.0 0.0 0.067 1 37.3 11.7 98.7 0.092 1.40 1.45 23.8 11.0 91.7 data scaling d*TREK data reduction HKL-2000 model building X-PLOR refinement SHELXL-97 data reduction d*TREK data scaling HKL-2000 phasing X-PLOR A-DNA/RNA DODECAMER R(GCG)D(TATACGC) MG BINDING SITES 1 N N 1 N N 2 N N 2 N N 2 N N 2 N N 3 N N 3 N N metalc 2.045 A MG 24 C MG MG 1_555 A HOH 215 G O HOH 1_555 metalc 2.050 A MG 24 C MG MG 1_555 A HOH 216 G O HOH 1_555 metalc 2.051 A MG 24 C MG MG 1_555 A HOH 217 G O HOH 1_555 metalc 2.065 A MG 24 C MG MG 1_555 A HOH 218 G O HOH 1_555 metalc 2.060 A MG 24 C MG MG 1_555 B HOH 219 H O HOH 1_555 metalc 2.081 A MG 24 C MG MG 1_555 B HOH 220 H O HOH 1_555 metalc 2.059 A HOH 205 G O HOH 1_555 B MG 22 E MG MG 1_555 metalc 2.067 B MG 21 D MG MG 1_555 B HOH 197 H O HOH 1_555 metalc 2.060 B MG 21 D MG MG 1_555 B HOH 198 H O HOH 1_555 metalc 2.072 B MG 21 D MG MG 1_555 B HOH 199 H O HOH 1_555 metalc 2.059 B MG 21 D MG MG 1_555 B HOH 200 H O HOH 1_555 metalc 2.061 B MG 21 D MG MG 1_555 B HOH 201 H O HOH 1_555 metalc 2.059 B MG 21 D MG MG 1_555 B HOH 202 H O HOH 1_555 metalc 2.053 B MG 22 E MG MG 1_555 B HOH 203 H O HOH 1_555 metalc 2.059 B MG 22 E MG MG 1_555 B HOH 204 H O HOH 1_555 metalc 2.059 B MG 22 E MG MG 1_555 B HOH 206 H O HOH 1_555 metalc 2.067 B MG 22 E MG MG 1_555 B HOH 207 H O HOH 1_555 metalc 2.053 B MG 22 E MG MG 1_555 B HOH 208 H O HOH 1_555 metalc 2.066 B MG 23 F MG MG 1_555 B HOH 209 H O HOH 1_555 metalc 2.057 B MG 23 F MG MG 1_555 B HOH 210 H O HOH 1_555 metalc 2.072 B MG 23 F MG MG 1_555 B HOH 211 H O HOH 1_555 metalc 2.058 B MG 23 F MG MG 1_555 B HOH 212 H O HOH 1_555 metalc 2.048 B MG 23 F MG MG 1_555 B HOH 213 H O HOH 1_555 metalc 2.050 B MG 23 F MG MG 1_555 B HOH 214 H O HOH 1_555 hydrog WATSON-CRICK A G 1 A N1 G 1 1_555 B DC 20 B N3 DC 10 1_555 hydrog WATSON-CRICK A G 1 A N2 G 1 1_555 B DC 20 B O2 DC 10 1_555 hydrog WATSON-CRICK A G 1 A O6 G 1 1_555 B DC 20 B N4 DC 10 1_555 hydrog WATSON-CRICK A C 2 A N3 C 2 1_555 B DG 19 B N1 DG 9 1_555 hydrog WATSON-CRICK A C 2 A N4 C 2 1_555 B DG 19 B O6 DG 9 1_555 hydrog WATSON-CRICK A C 2 A O2 C 2 1_555 B DG 19 B N2 DG 9 1_555 hydrog WATSON-CRICK A G 3 A N1 G 3 1_555 B DC 18 B N3 DC 8 1_555 hydrog WATSON-CRICK A G 3 A N2 G 3 1_555 B DC 18 B O2 DC 8 1_555 hydrog WATSON-CRICK A G 3 A O6 G 3 1_555 B DC 18 B N4 DC 8 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 B DA 17 B N1 DA 7 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 B DA 17 B N6 DA 7 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 16 B N3 DT 6 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 16 B O4 DT 6 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 B DA 15 B N1 DA 5 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 B DA 15 B N6 DA 5 1_555 hydrog WATSON-CRICK A DA 7 A N1 DA 7 1_555 B DT 14 B N3 DT 4 1_555 hydrog WATSON-CRICK A DA 7 A N6 DA 7 1_555 B DT 14 B O4 DT 4 1_555 hydrog WATSON-CRICK A DC 8 A N3 DC 8 1_555 B G 13 B N1 G 3 1_555 hydrog WATSON-CRICK A DC 8 A N4 DC 8 1_555 B G 13 B O6 G 3 1_555 hydrog WATSON-CRICK A DC 8 A O2 DC 8 1_555 B G 13 B N2 G 3 1_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 B C 12 B N3 C 2 1_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 B C 12 B O2 C 2 1_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 B C 12 B N4 C 2 1_555 hydrog WATSON-CRICK A DC 10 A N3 DC 10 1_555 B G 11 B N1 G 1 1_555 hydrog WATSON-CRICK A DC 10 A N4 DC 10 1_555 B G 11 B O6 G 1 1_555 hydrog WATSON-CRICK A DC 10 A O2 DC 10 1_555 B G 11 B N2 G 1 1_555 DNA-RNA HYBRID DNA CONFORMATION, RNA/DNA HYBRID, METAL IONS, DNA-RNA COMPLEX, DNA-RNA HYBRID COMPLEX, DNA-RNA HYBRID 1DNO PDB 1 1DNO 1 10 1DNO 1 10 1DNO A 1 1 10 11 20 1DNO 11 20 1DNO B 1 1 10 BINDING SITE FOR RESIDUE MG B 21 B MG 21 Software 6 BINDING SITE FOR RESIDUE MG B 22 B MG 22 Software 6 BINDING SITE FOR RESIDUE MG B 23 B MG 23 Software 6 BINDING SITE FOR RESIDUE MG A 24 A MG 24 Software 6 B HOH 197 H HOH 6 1_555 B HOH 198 H HOH 6 1_555 B HOH 199 H HOH 6 1_555 B HOH 200 H HOH 6 1_555 B HOH 201 H HOH 6 1_555 B HOH 202 H HOH 6 1_555 A HOH 205 G HOH 6 1_555 B HOH 203 H HOH 6 1_555 B HOH 204 H HOH 6 1_555 B HOH 206 H HOH 6 1_555 B HOH 207 H HOH 6 1_555 B HOH 208 H HOH 6 1_555 B HOH 209 H HOH 6 1_555 B HOH 210 H HOH 6 1_555 B HOH 211 H HOH 6 1_555 B HOH 212 H HOH 6 1_555 B HOH 213 H HOH 6 1_555 B HOH 214 H HOH 6 1_555 A HOH 215 G HOH 6 1_555 A HOH 216 G HOH 6 1_555 A HOH 217 G HOH 6 1_555 A HOH 218 G HOH 6 1_555 B HOH 219 H HOH 6 1_555 B HOH 220 H HOH 6 1_555 19 orthorhombic P 21 21 21