0.025973 0.014995 0.000000 0.000000 0.029991 0.000000 0.000000 0.000000 0.012881 0.00000 0.00000 0.00000 Robinson, H. Gao, Y.-G. Sanishvili, R. Joachimiak, A. Wang, A.H.-J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 38.502 38.502 77.631 C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 N C N 12 R C Y 13 N N Y 14 N C Y 15 N N Y 16 N C Y 17 N C N 18 N N Y 19 N N Y 20 N C Y 21 N N Y 22 N C N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N O N 38 N P N 39 N O N 40 N O N 41 N O N 42 N C N 43 R C N 44 N O N 45 S C N 46 N O N 47 N C N 48 R C N 49 N N N 50 N C N 51 N O N 52 N N N 53 N C N 54 N N N 55 N C N 56 N C N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N O N 72 N P N 73 N O N 74 N O N 75 N O N 76 N C N 77 R C N 78 N O N 79 S C N 80 N O N 81 N C N 82 R C Y 83 N N Y 84 N C Y 85 N N Y 86 N C N 87 N C N 88 N O N 89 N N N 90 N C N 91 N N N 92 N N Y 93 N C N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N O N 109 N P N 110 N O N 111 N O N 112 N O N 113 N C N 114 R C N 115 N O N 116 S C N 117 N O N 118 N C N 119 R C N 120 N N N 121 N C N 122 N O N 123 N N N 124 N C N 125 N O N 126 N C N 127 N C N 128 N C N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N MG N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing Y 24 N sing Y 25 N sing Y 26 N doub N 27 N sing Y 28 N sing Y 29 N sing Y 30 N doub N 31 N sing Y 32 N doub N 33 N sing N 34 N sing Y 35 N sing Y 36 N doub N 37 N sing Y 38 N sing N 39 N sing N 40 N sing N 41 N doub N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing Y 97 N sing Y 98 N sing Y 99 N doub N 100 N sing Y 101 N sing N 102 N sing Y 103 N doub N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N doub N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing UK Nucleic Acids Res. NARHAD 0389 0305-1048 28 1760 1766 10.1093/nar/28.8.1760 10734195 Hexahydrated magnesium ions bind in the deep major groove and at the outer mouth of A-form nucleic acid duplexes. 2000 10.2210/pdb1dnz/pdb pdb_00001dnz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 123 1 IMAGE PLATE 1999-05-05 RIGAKU RAXIS IIC SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RU200 3045.992 DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') 1 syn polymer 24.305 MAGNESIUM ION 2 syn non-polymer 18.015 water 36 nat water no no (DA)(DC)(DC)(DG)(DG)(DC)(DC)(DG)(DG)(DT) ACCGGCCGGT A polydeoxyribonucleotide n n n n n n n n n n 1 2.44 50.0 VAPOR DIFFUSION, SITTING DROP 6.5 MPD, CACODYLATE, MGCL2, SPERMINE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K 298 CACODYLATE 1 SPERMINE 1 MGCL2 1 MPD 1 MPD 2 -5.470 1 20 A 1 A 10 -7.138 A_DA1:DT10_A 1 -14.267 -0.732 -0.026 -0.613 7.488 1 19 A 2 A 9 2.159 A_DC2:DG9_A 2 -12.995 0.211 0.145 -0.141 7.265 1 19 A 3 A 8 0.221 A_DC3:DG8_A 3 -12.771 0.143 -0.038 -0.083 11.275 1 19 A 4 A 7 2.010 A_DG4:DC7_A 4 -9.851 -0.214 0.380 -0.118 2.426 1 19 A 5 A 6 0.338 A_DG5:DC6_A 5 -19.532 -0.340 0.154 -0.096 -2.426 1 19 A 6 A 5 0.338 A_DC6:DG5_A 6 -19.532 0.340 0.154 -0.096 -11.275 1 19 A 7 A 4 2.010 A_DC7:DG4_A 7 -9.851 0.214 0.380 -0.118 -7.265 1 19 A 8 A 3 0.221 A_DG8:DC3_A 8 -12.771 -0.143 -0.038 -0.083 -7.488 1 19 A 9 A 2 2.159 A_DG9:DC2_A 9 -12.995 -0.211 0.145 -0.141 5.470 1 20 A 10 A 1 -7.138 A_DT10:DA1_A 10 -14.267 0.732 -0.026 -0.613 2.551 38.092 A A 1 2 12.188 A A 10 9 2.902 7.898 0.874 -1.211 AA_DA1DC2:DG9DT10_AA 1 -2.057 3.174 37.239 -2.700 -1.559 3.012 34.815 A A 2 3 9.380 A A 9 8 3.268 5.589 -0.200 -1.406 AA_DC2DC3:DG8DG9_AA 2 -0.478 0.802 34.374 -3.172 0.265 2.149 27.761 A A 3 4 24.260 A A 8 7 3.097 11.244 -0.278 -1.719 AA_DC3DG4:DC7DG8_AA 3 -5.181 11.179 24.896 -5.879 -0.479 2.939 35.755 A A 4 5 13.201 A A 7 6 3.289 8.034 -0.568 -1.379 AA_DG4DG5:DC6DC7_AA 4 -2.333 3.834 34.794 -3.365 0.600 3.140 36.189 A A 5 6 7.711 A A 6 5 3.328 4.777 0.000 -1.262 AA_DG5DC6:DG5DC6_AA 5 0.000 0.000 35.883 -2.699 0.000 2.939 35.755 A A 6 7 13.201 A A 5 4 3.289 8.034 0.568 -1.379 AA_DC6DC7:DG4DG5_AA 6 2.333 -3.834 34.794 -3.365 -0.600 2.149 27.761 A A 7 8 24.260 A A 4 3 3.097 11.244 0.278 -1.719 AA_DC7DG8:DC3DG4_AA 7 5.181 -11.179 24.896 -5.879 0.479 3.012 34.815 A A 8 9 9.380 A A 3 2 3.268 5.589 0.200 -1.406 AA_DG8DG9:DC2DC3_AA 8 0.478 -0.802 34.374 -3.172 -0.265 2.551 38.092 A A 9 10 12.188 A A 2 1 2.902 7.898 -0.874 -1.211 AA_DG9DT10:DA1DC2_AA 9 2.057 -3.174 37.239 -2.700 1.559 software chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations 1 0 2000-04-10 1 1 2008-04-27 1 2 2011-07-13 1 3 2017-10-04 1 4 2024-02-07 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 1999-12-17 REL REL MG MAGNESIUM ION HOH water MO6 21 2 MG MG 21 A MO6 22 2 MG MG 22 A HOH 101 3 HOH HOH 101 A HOH 102 3 HOH HOH 102 A HOH 103 3 HOH HOH 103 A HOH 104 3 HOH HOH 104 A HOH 105 3 HOH HOH 105 A HOH 106 3 HOH HOH 106 A HOH 107 3 HOH HOH 107 A HOH 108 3 HOH HOH 108 A HOH 109 3 HOH HOH 109 A HOH 110 3 HOH HOH 110 A HOH 111 3 HOH HOH 111 A HOH 112 3 HOH HOH 112 A HOH 113 3 HOH HOH 113 A HOH 114 3 HOH HOH 114 A HOH 115 3 HOH HOH 115 A HOH 116 3 HOH HOH 116 A HOH 117 3 HOH HOH 117 A HOH 118 3 HOH HOH 118 A HOH 119 3 HOH HOH 119 A HOH 120 3 HOH HOH 120 A HOH 121 3 HOH HOH 121 A HOH 122 3 HOH HOH 122 A HOH 123 3 HOH HOH 123 A HOH 124 3 HOH HOH 124 A MO6 21 3 HOH HOH 125 A MO6 21 3 HOH HOH 126 A MO6 21 3 HOH HOH 127 A MO6 21 3 HOH HOH 128 A MO6 21 3 HOH HOH 129 A MO6 21 3 HOH HOH 130 A MO6 22 3 HOH HOH 131 A MO6 22 3 HOH HOH 132 A MO6 22 3 HOH HOH 133 A MO6 22 3 HOH HOH 134 A MO6 22 3 HOH HOH 135 A MO6 22 3 HOH HOH 136 A A 1 n 1 DA 1 A C 2 n 2 DC 2 A C 3 n 3 DC 3 A G 4 n 4 DG 4 A G 5 n 5 DG 5 A C 6 n 6 DC 6 A C 7 n 7 DC 7 A G 8 n 8 DG 8 A G 9 n 9 DG 9 A T 10 n 10 DT 10 A 0.2290000 0.2270000 0.2780000 242 5 4656 author_defined_assembly 2 dimeric A HOH 125 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 126 D O HOH 1_555 178.4 A HOH 125 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 127 D O HOH 1_555 90.5 A HOH 126 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 127 D O HOH 1_555 88.3 A HOH 125 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 128 D O HOH 1_555 90.3 A HOH 126 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 128 D O HOH 1_555 90.7 A HOH 127 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 128 D O HOH 1_555 87.6 A HOH 125 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 129 D O HOH 1_555 91.1 A HOH 126 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 129 D O HOH 1_555 90.2 A HOH 127 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 129 D O HOH 1_555 177.1 A HOH 128 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 129 D O HOH 1_555 90.0 A HOH 125 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 130 D O HOH 1_555 88.8 A HOH 126 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 130 D O HOH 1_555 90.2 A HOH 127 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 130 D O HOH 1_555 91.7 A HOH 128 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 130 D O HOH 1_555 178.9 A HOH 129 D O HOH 1_555 A MG 21 B MG MG 1_555 A HOH 130 D O HOH 1_555 90.7 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 102 D O HOH 11_555 75.6 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 131 D O HOH 1_555 73.2 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 131 D O HOH 1_555 12.3 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 1_555 106.0 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 1_555 167.3 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 1_555 179.2 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 11_555 89.1 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 11_555 78.0 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 11_555 90.1 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 11_555 89.5 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 1_555 152.4 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 1_555 83.7 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 1_555 90.2 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 1_555 90.3 A HOH 132 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 1_555 68.5 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 11_555 122.8 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 11_555 121.0 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 11_555 111.7 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 11_555 69.1 A HOH 132 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 11_555 144.8 A HOH 133 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 11_555 83.6 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 111.1 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 101.1 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 90.6 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 90.1 A HOH 132 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 159.1 A HOH 133 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 90.6 A HOH 133 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 22.3 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 157.8 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 85.2 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 90.3 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 90.3 A HOH 132 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 75.8 A HOH 133 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 7.3 A HOH 133 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 76.8 A HOH 134 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 83.3 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 26.9 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 96.2 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 89.9 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 89.6 A HOH 132 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 110.5 A HOH 133 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 179.0 A HOH 133 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 97.3 A HOH 134 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 90.4 A HOH 134 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 173.7 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 69.2 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 79.3 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 89.8 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 89.5 A HOH 132 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 20.7 A HOH 133 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 89.2 A HOH 133 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 157.2 A HOH 134 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 179.5 A HOH 134 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 96.5 A HOH 135 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 89.8 A HOH 101 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 98.9 A HOH 102 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 157.5 A HOH 131 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 167.7 A HOH 132 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 11.5 A HOH 132 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 80.2 A HOH 133 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 93.1 A HOH 133 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 80.5 A HOH 134 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 101.2 A HOH 134 D O HOH 11_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 94.5 A HOH 135 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 86.6 A HOH 136 D O HOH 1_555 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 78.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 11_555 -x+y,y,-z+1/2 crystal symmetry operation 0.0000000000 0.0000000000 38.8155000000 1 A DG 4 0.080 SIDE CHAIN 1 A DG 8 0.051 SIDE CHAIN 1 A DG 9 0.060 SIDE CHAIN 1 A DT 10 0.059 SIDE CHAIN 1 -4.63 0.70 108.00 103.37 A A A O4' C1' N9 DA DA DA 1 1 1 N 1 -2.46 0.40 104.50 102.04 A A A O4' C4' C3' DC DC DC 3 3 3 N 1 -4.64 0.70 102.20 97.56 A A A C4' C3' C2' DC DC DC 3 3 3 N 1 -2.56 0.40 121.90 119.34 A A A N3 C4 C5 DC DC DC 3 3 3 N 1 -4.44 0.70 102.20 97.76 A A A C4' C3' C2' DG DG DG 4 4 4 N 1 2.75 0.30 108.30 111.05 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 2.65 0.40 120.30 122.95 A A A C6 N1 C2 DC DC DC 6 6 6 N 1 -5.07 0.70 118.00 112.93 A A A N3 C4 N4 DC DC DC 6 6 6 N 1 -2.89 0.40 104.50 101.61 A A A O4' C4' C3' DG DG DG 9 9 9 N 0.2790000 0.2270000 0.2290000 0.2270000 1.6 20.0 963 245 4874 4874 907 5 99.6 RANDOM 1 A POSTERIORI 0.0 0.0 MOLECULAR REPLACEMENT G.PARKINSON ET AL. SHELXL SWAT OPTION 0 0 235.5 1.6 20.0 24 240 14 202 0 0.009 0.025 0.071 0.003 0.060 29.2 1.6 20.0 1DNZ 4901 4901 0.0 0.0 0.0420000 1 47.8 15.2 99.6 0.4890000 1.60 1.65 9.2 8.4 96.8 model building X-PLOR refinement SHELXL-97 data scaling d*TREK phasing X-PLOR A-DNA DECAMER ACCGGCCGGT WITH MAGNESIUM BINDING SITES 1 N N 2 N N 2 N N 3 N N metalc 2.064 A MG 21 B MG MG 1_555 A HOH 125 D O HOH 1_555 metalc 2.070 A MG 21 B MG MG 1_555 A HOH 126 D O HOH 1_555 metalc 2.070 A MG 21 B MG MG 1_555 A HOH 127 D O HOH 1_555 metalc 2.061 A MG 21 B MG MG 1_555 A HOH 128 D O HOH 1_555 metalc 2.058 A MG 21 B MG MG 1_555 A HOH 129 D O HOH 1_555 metalc 2.050 A MG 21 B MG MG 1_555 A HOH 130 D O HOH 1_555 metalc 2.399 A MG 22 C MG MG 1_555 A HOH 101 D O HOH 1_555 metalc 2.477 A MG 22 C MG MG 1_555 A HOH 102 D O HOH 11_555 metalc 2.055 A MG 22 C MG MG 1_555 A HOH 131 D O HOH 1_555 metalc 2.059 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 1_555 metalc 1.548 A MG 22 C MG MG 1_555 A HOH 132 D O HOH 11_555 metalc 2.062 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 1_555 metalc 1.516 A MG 22 C MG MG 1_555 A HOH 133 D O HOH 11_555 metalc 2.052 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 1_555 metalc 2.871 A MG 22 C MG MG 1_555 A HOH 134 D O HOH 11_555 metalc 2.060 A MG 22 C MG MG 1_555 A HOH 135 D O HOH 1_555 metalc 2.067 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 1_555 metalc 2.736 A MG 22 C MG MG 1_555 A HOH 136 D O HOH 11_555 hydrog WATSON-CRICK A DA 1 A N1 DA 1 1_555 A DT 10 A N3 DT 10 11_555 hydrog WATSON-CRICK A DA 1 A N6 DA 1 1_555 A DT 10 A O4 DT 10 11_555 hydrog WATSON-CRICK A DC 2 A N3 DC 2 1_555 A DG 9 A N1 DG 9 11_555 hydrog WATSON-CRICK A DC 2 A N4 DC 2 1_555 A DG 9 A O6 DG 9 11_555 hydrog WATSON-CRICK A DC 2 A O2 DC 2 1_555 A DG 9 A N2 DG 9 11_555 hydrog WATSON-CRICK A DC 3 A N3 DC 3 1_555 A DG 8 A N1 DG 8 11_555 hydrog WATSON-CRICK A DC 3 A N4 DC 3 1_555 A DG 8 A O6 DG 8 11_555 hydrog WATSON-CRICK A DC 3 A O2 DC 3 1_555 A DG 8 A N2 DG 8 11_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 A DC 7 A N3 DC 7 11_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 A DC 7 A O2 DC 7 11_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 A DC 7 A N4 DC 7 11_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 A DC 6 A N3 DC 6 11_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 A DC 6 A O2 DC 6 11_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 A DC 6 A N4 DC 6 11_555 hydrog WATSON-CRICK A DC 6 A N3 DC 6 1_555 A DG 5 A N1 DG 5 11_555 hydrog WATSON-CRICK A DC 6 A N4 DC 6 1_555 A DG 5 A O6 DG 5 11_555 hydrog WATSON-CRICK A DC 6 A O2 DC 6 1_555 A DG 5 A N2 DG 5 11_555 hydrog WATSON-CRICK A DC 7 A N3 DC 7 1_555 A DG 4 A N1 DG 4 11_555 hydrog WATSON-CRICK A DC 7 A N4 DC 7 1_555 A DG 4 A O6 DG 4 11_555 hydrog WATSON-CRICK A DC 7 A O2 DC 7 1_555 A DG 4 A N2 DG 4 11_555 hydrog WATSON-CRICK A DG 8 A N1 DG 8 1_555 A DC 3 A N3 DC 3 11_555 hydrog WATSON-CRICK A DG 8 A N2 DG 8 1_555 A DC 3 A O2 DC 3 11_555 hydrog WATSON-CRICK A DG 8 A O6 DG 8 1_555 A DC 3 A N4 DC 3 11_555 hydrog WATSON-CRICK A DG 9 A N1 DG 9 1_555 A DC 2 A N3 DC 2 11_555 hydrog WATSON-CRICK A DG 9 A N2 DG 9 1_555 A DC 2 A O2 DC 2 11_555 hydrog WATSON-CRICK A DG 9 A O6 DG 9 1_555 A DC 2 A N4 DC 2 11_555 hydrog WATSON-CRICK A DT 10 A N3 DT 10 1_555 A DA 1 A N1 DA 1 11_555 hydrog WATSON-CRICK A DT 10 A O4 DT 10 1_555 A DA 1 A N6 DA 1 11_555 DNA DNA CONFORMATION, METAL IONS, DNA 1DNZ PDB 1 1DNZ 1 10 1DNZ 1 10 1DNZ A 1 1 10 BINDING SITE FOR RESIDUE MG A 21 A MG 21 Software 6 BINDING SITE FOR RESIDUE MG A 22 A MG 22 Software 12 A HOH 125 D HOH 6 1_555 A HOH 126 D HOH 6 1_555 A HOH 127 D HOH 6 1_555 A HOH 128 D HOH 6 1_555 A HOH 129 D HOH 6 1_555 A HOH 130 D HOH 6 1_555 A HOH 101 D HOH 12 1_555 A HOH 102 D HOH 12 11_555 A HOH 131 D HOH 12 1_555 A HOH 132 D HOH 12 11_555 A HOH 132 D HOH 12 1_555 A HOH 133 D HOH 12 1_555 A HOH 133 D HOH 12 11_555 A HOH 134 D HOH 12 11_555 A HOH 134 D HOH 12 1_555 A HOH 135 D HOH 12 1_555 A HOH 136 D HOH 12 11_555 A HOH 136 D HOH 12 1_555 178 hexagonal P 61 2 2