0.019708
0.000000
0.000000
0.000000
0.019708
0.000000
0.000000
0.000000
0.009289
0.00000
0.00000
0.00000
Lubkowski, J.
Bujacz, G.
Boque, L.
Wlodawer, A.
Domaille, P.J.
Handel, T.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.00
90.00
90.00
50.740
50.740
107.650
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Nat.Struct.Biol.
NSBIEW
2024
1072-8368
4
64
69
10.1038/nsb0197-64
8989326
The structure of MCP-1 in two crystal forms provides a rare example of variable quaternary interactions.
1997
US
Biochemistry
BICHAW
0033
0006-2960
35
6569
Heteronuclear (1H, 13C, 15N) NMR Assignments and Solution Structure of the Monocyte Chemoattractant Protein-1 (Mcp-1) Dimer
1996
10.2210/pdb1dok/pdb
pdb_00001dok
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
298
1
COLLIMATOR
IMAGE PLATE
1995-11-05
RIGAKU
GRAPHITE(002)
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
RIGAKU RUH2R
8830.239
MONOCYTE CHEMOATTRACTANT PROTEIN 1
N-TERMINAL METHIONINE NOT REMOVED POST-TRANSLATIONALLY
2
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
116
nat
water
MCP-1, MCAF
no
no
MQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
MQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQTPKT
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
9606
Homo sapiens
562
Escherichia coli
BL21
1
2.04
32.
INITIAL MODEL FOR MOLECULAR REPLACEMENT WAS MODIFIED AS DESCRIBED IN JOURNAL ARTICLE.
VAPOR DIFFUSION, HANGING DROP
8.0
10 MG/ML PROTEIN IN 50 MM TRIS BUFFER PH 7.5-8 EQUILIBRATED AGAINST 50-55% AMMONIUM SULFATE USING HANGING DROP VAPOR DIFFUSION METHOD., pH 8.0, vapor diffusion - hanging drop
7.5-8.0
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Refinement description
1
0
1997-03-12
1
1
2008-03-24
1
2
2011-07-13
1
3
2023-08-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
BNL
1996-11-27
REL
SO4
SULFATE ION
HOH
water
RESIDUE MET 0 IS AN ARTIFACT OF EXPRESSION.
1DOM
PDB ENTRY 1DOM
PDB
experimental model
SO4
402
2
SO4
SO4
402
A
SO4
401
2
SO4
SO4
401
B
HOH
201
3
HOH
HOH
201
A
HOH
204
3
HOH
HOH
204
A
HOH
205
3
HOH
HOH
205
A
HOH
207
3
HOH
HOH
207
A
HOH
209
3
HOH
HOH
209
A
HOH
210
3
HOH
HOH
210
A
HOH
211
3
HOH
HOH
211
A
HOH
212
3
HOH
HOH
212
A
HOH
213
3
HOH
HOH
213
A
HOH
214
3
HOH
HOH
214
A
HOH
215
3
HOH
HOH
215
A
HOH
216
3
HOH
HOH
216
A
HOH
217
3
HOH
HOH
217
A
HOH
218
3
HOH
HOH
218
A
HOH
221
3
HOH
HOH
221
A
HOH
242
3
HOH
HOH
242
A
HOH
244
3
HOH
HOH
244
A
HOH
246
3
HOH
HOH
246
A
HOH
247
3
HOH
HOH
247
A
HOH
248
3
HOH
HOH
248
A
HOH
249
3
HOH
HOH
249
A
HOH
250
3
HOH
HOH
250
A
HOH
251
3
HOH
HOH
251
A
HOH
252
3
HOH
HOH
252
A
HOH
253
3
HOH
HOH
253
A
HOH
254
3
HOH
HOH
254
A
HOH
255
3
HOH
HOH
255
A
HOH
256
3
HOH
HOH
256
A
HOH
257
3
HOH
HOH
257
A
HOH
270
3
HOH
HOH
270
A
HOH
271
3
HOH
HOH
271
A
HOH
272
3
HOH
HOH
272
A
HOH
273
3
HOH
HOH
273
A
HOH
274
3
HOH
HOH
274
A
HOH
275
3
HOH
HOH
275
A
HOH
276
3
HOH
HOH
276
A
HOH
277
3
HOH
HOH
277
A
HOH
278
3
HOH
HOH
278
A
HOH
279
3
HOH
HOH
279
A
HOH
284
3
HOH
HOH
284
A
HOH
285
3
HOH
HOH
285
A
HOH
286
3
HOH
HOH
286
A
HOH
295
3
HOH
HOH
295
A
HOH
296
3
HOH
HOH
296
A
HOH
300
3
HOH
HOH
300
A
HOH
304
3
HOH
HOH
304
A
HOH
306
3
HOH
HOH
306
A
HOH
307
3
HOH
HOH
307
A
HOH
308
3
HOH
HOH
308
A
HOH
309
3
HOH
HOH
309
A
HOH
313
3
HOH
HOH
313
A
HOH
316
3
HOH
HOH
316
A
HOH
202
3
HOH
HOH
202
B
HOH
203
3
HOH
HOH
203
B
HOH
206
3
HOH
HOH
206
B
HOH
208
3
HOH
HOH
208
B
HOH
219
3
HOH
HOH
219
B
HOH
220
3
HOH
HOH
220
B
HOH
222
3
HOH
HOH
222
B
HOH
223
3
HOH
HOH
223
B
HOH
224
3
HOH
HOH
224
B
HOH
225
3
HOH
HOH
225
B
HOH
226
3
HOH
HOH
226
B
HOH
227
3
HOH
HOH
227
B
HOH
228
3
HOH
HOH
228
B
HOH
229
3
HOH
HOH
229
B
HOH
230
3
HOH
HOH
230
B
HOH
231
3
HOH
HOH
231
B
HOH
232
3
HOH
HOH
232
B
HOH
233
3
HOH
HOH
233
B
HOH
234
3
HOH
HOH
234
B
HOH
235
3
HOH
HOH
235
B
HOH
236
3
HOH
HOH
236
B
HOH
237
3
HOH
HOH
237
B
HOH
238
3
HOH
HOH
238
B
HOH
239
3
HOH
HOH
239
B
HOH
240
3
HOH
HOH
240
B
HOH
241
3
HOH
HOH
241
B
HOH
243
3
HOH
HOH
243
B
HOH
245
3
HOH
HOH
245
B
HOH
258
3
HOH
HOH
258
B
HOH
259
3
HOH
HOH
259
B
HOH
260
3
HOH
HOH
260
B
HOH
261
3
HOH
HOH
261
B
HOH
262
3
HOH
HOH
262
B
HOH
263
3
HOH
HOH
263
B
HOH
264
3
HOH
HOH
264
B
HOH
265
3
HOH
HOH
265
B
HOH
266
3
HOH
HOH
266
B
HOH
267
3
HOH
HOH
267
B
HOH
268
3
HOH
HOH
268
B
HOH
269
3
HOH
HOH
269
B
HOH
280
3
HOH
HOH
280
B
HOH
281
3
HOH
HOH
281
B
HOH
282
3
HOH
HOH
282
B
HOH
283
3
HOH
HOH
283
B
HOH
287
3
HOH
HOH
287
B
HOH
288
3
HOH
HOH
288
B
HOH
289
3
HOH
HOH
289
B
HOH
290
3
HOH
HOH
290
B
HOH
291
3
HOH
HOH
291
B
HOH
292
3
HOH
HOH
292
B
HOH
293
3
HOH
HOH
293
B
HOH
294
3
HOH
HOH
294
B
HOH
297
3
HOH
HOH
297
B
HOH
298
3
HOH
HOH
298
B
HOH
299
3
HOH
HOH
299
B
HOH
301
3
HOH
HOH
301
B
HOH
302
3
HOH
HOH
302
B
HOH
303
3
HOH
HOH
303
B
HOH
305
3
HOH
HOH
305
B
HOH
310
3
HOH
HOH
310
B
HOH
311
3
HOH
HOH
311
B
HOH
312
3
HOH
HOH
312
B
HOH
314
3
HOH
HOH
314
B
HOH
315
3
HOH
HOH
315
B
MET
0
n
1
MET
0
A
GLN
1
n
2
GLN
1
A
PRO
2
n
3
PRO
2
A
ASP
3
n
4
ASP
3
A
ALA
4
n
5
ALA
4
A
ILE
5
n
6
ILE
5
A
ASN
6
n
7
ASN
6
A
ALA
7
n
8
ALA
7
A
PRO
8
n
9
PRO
8
A
VAL
9
n
10
VAL
9
A
THR
10
n
11
THR
10
A
CYS
11
n
12
CYS
11
A
CYS
12
n
13
CYS
12
A
TYR
13
n
14
TYR
13
A
ASN
14
n
15
ASN
14
A
PHE
15
n
16
PHE
15
A
THR
16
n
17
THR
16
A
ASN
17
n
18
ASN
17
A
ARG
18
n
19
ARG
18
A
LYS
19
n
20
LYS
19
A
ILE
20
n
21
ILE
20
A
SER
21
n
22
SER
21
A
VAL
22
n
23
VAL
22
A
GLN
23
n
24
GLN
23
A
ARG
24
n
25
ARG
24
A
LEU
25
n
26
LEU
25
A
ALA
26
n
27
ALA
26
A
SER
27
n
28
SER
27
A
TYR
28
n
29
TYR
28
A
ARG
29
n
30
ARG
29
A
ARG
30
n
31
ARG
30
A
ILE
31
n
32
ILE
31
A
THR
32
n
33
THR
32
A
SER
33
n
34
SER
33
A
SER
34
n
35
SER
34
A
LYS
35
n
36
LYS
35
A
CYS
36
n
37
CYS
36
A
PRO
37
n
38
PRO
37
A
LYS
38
n
39
LYS
38
A
GLU
39
n
40
GLU
39
A
ALA
40
n
41
ALA
40
A
VAL
41
n
42
VAL
41
A
ILE
42
n
43
ILE
42
A
PHE
43
n
44
PHE
43
A
LYS
44
n
45
LYS
44
A
THR
45
n
46
THR
45
A
ILE
46
n
47
ILE
46
A
VAL
47
n
48
VAL
47
A
ALA
48
n
49
ALA
48
A
LYS
49
n
50
LYS
49
A
GLU
50
n
51
GLU
50
A
ILE
51
n
52
ILE
51
A
CYS
52
n
53
CYS
52
A
ALA
53
n
54
ALA
53
A
ASP
54
n
55
ASP
54
A
PRO
55
n
56
PRO
55
A
LYS
56
n
57
LYS
56
A
GLN
57
n
58
GLN
57
A
LYS
58
n
59
LYS
58
A
TRP
59
n
60
TRP
59
A
VAL
60
n
61
VAL
60
A
GLN
61
n
62
GLN
61
A
ASP
62
n
63
ASP
62
A
SER
63
n
64
SER
63
A
MET
64
n
65
MET
64
A
ASP
65
n
66
ASP
65
A
HIS
66
n
67
HIS
66
A
LEU
67
n
68
LEU
67
A
ASP
68
n
69
ASP
68
A
LYS
69
n
70
LYS
69
A
GLN
70
n
71
GLN
70
A
THR
71
n
72
THR
71
A
n
73
72
A
n
74
73
A
n
75
74
A
n
76
75
A
n
77
76
A
MET
0
n
1
MET
0
B
GLN
1
n
2
GLN
1
B
PRO
2
n
3
PRO
2
B
ASP
3
n
4
ASP
3
B
ALA
4
n
5
ALA
4
B
ILE
5
n
6
ILE
5
B
ASN
6
n
7
ASN
6
B
ALA
7
n
8
ALA
7
B
PRO
8
n
9
PRO
8
B
VAL
9
n
10
VAL
9
B
THR
10
n
11
THR
10
B
CYS
11
n
12
CYS
11
B
CYS
12
n
13
CYS
12
B
TYR
13
n
14
TYR
13
B
ASN
14
n
15
ASN
14
B
PHE
15
n
16
PHE
15
B
THR
16
n
17
THR
16
B
ASN
17
n
18
ASN
17
B
ARG
18
n
19
ARG
18
B
LYS
19
n
20
LYS
19
B
ILE
20
n
21
ILE
20
B
SER
21
n
22
SER
21
B
VAL
22
n
23
VAL
22
B
GLN
23
n
24
GLN
23
B
ARG
24
n
25
ARG
24
B
LEU
25
n
26
LEU
25
B
ALA
26
n
27
ALA
26
B
SER
27
n
28
SER
27
B
TYR
28
n
29
TYR
28
B
ARG
29
n
30
ARG
29
B
ARG
30
n
31
ARG
30
B
ILE
31
n
32
ILE
31
B
THR
32
n
33
THR
32
B
SER
33
n
34
SER
33
B
SER
34
n
35
SER
34
B
LYS
35
n
36
LYS
35
B
CYS
36
n
37
CYS
36
B
PRO
37
n
38
PRO
37
B
LYS
38
n
39
LYS
38
B
GLU
39
n
40
GLU
39
B
ALA
40
n
41
ALA
40
B
VAL
41
n
42
VAL
41
B
ILE
42
n
43
ILE
42
B
PHE
43
n
44
PHE
43
B
LYS
44
n
45
LYS
44
B
THR
45
n
46
THR
45
B
ILE
46
n
47
ILE
46
B
VAL
47
n
48
VAL
47
B
ALA
48
n
49
ALA
48
B
LYS
49
n
50
LYS
49
B
GLU
50
n
51
GLU
50
B
ILE
51
n
52
ILE
51
B
CYS
52
n
53
CYS
52
B
ALA
53
n
54
ALA
53
B
ASP
54
n
55
ASP
54
B
PRO
55
n
56
PRO
55
B
LYS
56
n
57
LYS
56
B
GLN
57
n
58
GLN
57
B
LYS
58
n
59
LYS
58
B
TRP
59
n
60
TRP
59
B
VAL
60
n
61
VAL
60
B
GLN
61
n
62
GLN
61
B
ASP
62
n
63
ASP
62
B
SER
63
n
64
SER
63
B
MET
64
n
65
MET
64
B
ASP
65
n
66
ASP
65
B
HIS
66
n
67
HIS
66
B
LEU
67
n
68
LEU
67
B
ASP
68
n
69
ASP
68
B
LYS
69
n
70
LYS
69
B
GLN
70
n
71
GLN
70
B
THR
71
n
72
THR
71
B
n
73
72
B
n
74
73
B
n
75
74
B
n
76
75
B
n
77
76
B
author_and_software_defined_assembly
PISA
2
dimeric
software_defined_assembly
PISA
4
tetrameric
2130
-23
9190
6750
-92
16270
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_665
-y+1,-x+1,-z+1/2
crystal symmetry operation
50.7400000000
50.7400000000
53.8250000000
A
O
VAL
9
A
O
VAL
10
B
N
CYS
11
B
N
CYS
12
A
O
ILE
51
A
O
ILE
52
A
N
PHE
43
A
N
PHE
44
A
O
ALA
40
A
O
ALA
41
A
N
ILE
31
A
N
ILE
32
B
O
ILE
51
B
O
ILE
52
B
N
PHE
43
B
N
PHE
44
B
O
ILE
42
B
O
ILE
43
B
N
ARG
29
B
N
ARG
30
1
A
GLN
72
A
GLN
73
1
Y
1
A
THR
73
A
THR
74
1
Y
1
A
PRO
74
A
PRO
75
1
Y
1
A
LYS
75
A
LYS
76
1
Y
1
A
THR
76
A
THR
77
1
Y
1
B
GLN
72
B
GLN
73
1
Y
1
B
THR
73
B
THR
74
1
Y
1
B
PRO
74
B
PRO
75
1
Y
1
B
LYS
75
B
LYS
76
1
Y
1
B
THR
76
B
THR
77
1
Y
1
B
GLN
1
-13.06
-65.09
1
B
SER
27
-170.09
-178.85
1
B
ALA
48
70.68
40.05
PARHCSDX.PRO
TOPHCSDX.PRO
30.0
REFLECTIONS FOR R-FREE TEST SELECTED IN 10.0 - 2.0 A RESOLUTION RANGE. THE TWO CHAINS WERE REFINED INDEPENDENTLY.
0.245
0.010
0.191
0.191
1.85
10.0
572
12308
7.0
97.0
RANDOM, UP TO 2.0 A
10000000.00
0.001
1
2.0
MOLECULAR REPLACEMENT
PDB ENTRY 1DOM
1.85
10.0
116
1278
10
0
1152
0.014
1.74
27.7
1.46
2.19
1.5
2.32
2.0
2.19
2.0
2.32
2.5
1.85
10.0
1DOK
12318
0.0
0.078
1
15.3
4.59
97.0
1.85
1.92
2.15
0.363
3.82
94.7
data reduction
DENZO
data scaling
SCALEPACK
phasing
AMoRE
refinement
X-PLOR
3.1
MONOCYTE CHEMOATTRACTANT PROTEIN 1, P-FORM
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
PRO
2
A
PRO
3
HELX_P
A
ASN
6
A
ASN
7
1
1
5
A
VAL
22
A
VAL
23
HELX_P
A
ARG
24
A
ARG
25
5
2
3
A
LYS
58
A
LYS
59
HELX_P
A
LYS
69
A
LYS
70
1
3
12
B
ASP
3
B
ASP
4
HELX_P
B
ASN
6
B
ASN
7
5
4
4
B
LYS
58
B
LYS
59
HELX_P
B
LYS
69
B
LYS
70
1
5
12
disulf
2.029
A
CYS
11
A
SG
CYS
12
1_555
A
CYS
36
A
SG
CYS
37
1_555
disulf
2.036
A
CYS
12
A
SG
CYS
13
1_555
A
CYS
52
A
SG
CYS
53
1_555
disulf
2.023
B
CYS
11
B
SG
CYS
12
1_555
B
CYS
36
B
SG
CYS
37
1_555
disulf
2.024
B
CYS
12
B
SG
CYS
13
1_555
B
CYS
52
B
SG
CYS
53
1_555
CHEMOATTRACTANT
CHEMOATTRACTANT, CYTOKINE
given
-0.652315
-0.596164
0.468052
-0.546077
-0.058591
-0.835684
0.525628
-0.800722
-0.287332
35.99238
84.54701
71.81376
CCL2_HUMAN
UNP
1
1
P13500
MKVSAALLCLLLIAATFIPQGLAQPDAINAPVTCCYNFTNRKISVQRLASYRRITSSKCPKEAVIFKTIVAKEICADPKQ
KWVQDSMDHLDKQTQTPKT
24
99
1DOK
1
76
P13500
A
1
2
77
24
99
1DOK
1
76
P13500
B
1
2
77
2
3
3
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
9
A
VAL
10
A
CYS
11
A
CYS
12
B
VAL
9
B
VAL
10
B
CYS
11
B
CYS
12
A
GLU
50
A
GLU
51
A
ALA
53
A
ALA
54
A
ALA
40
A
ALA
41
A
THR
45
A
THR
46
A
LEU
25
A
LEU
26
A
ILE
31
A
ILE
32
B
GLU
50
B
GLU
51
B
ALA
53
B
ALA
54
B
VAL
41
B
VAL
42
B
THR
45
B
THR
46
B
LEU
25
B
LEU
26
B
ARG
30
B
ARG
31
BINDING SITE FOR RESIDUE SO4 B 401
B
SO4
401
Software
8
BINDING SITE FOR RESIDUE SO4 A 402
A
SO4
402
Software
7
A
ASN
6
A
ASN
7
8
1_555
A
ASN
14
A
ASN
15
8
3_654
B
THR
16
B
THR
17
8
1_555
B
ASN
17
B
ASN
18
8
1_555
B
ARG
18
B
ARG
19
8
1_555
B
LYS
35
B
LYS
36
8
3_654
B
HOH
234
F
HOH
8
3_654
B
HOH
299
F
HOH
8
1_555
A
SER
33
A
SER
34
7
8_665
A
SER
34
A
SER
35
7
8_665
A
SER
34
A
SER
35
7
1_555
A
HOH
279
E
HOH
7
1_555
A
HOH
279
E
HOH
7
8_665
A
HOH
304
E
HOH
7
8_665
A
HOH
304
E
HOH
7
1_555
96
P 43 21 2