1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Stockner, T.
Plugariu, C.
Koraimann, G.
Hoegenauer, G.
Bermel, W.
Prytulla, S.
Sterk, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
40
3370
3377
10.1021/bi002031c
11258958
Solution structure of the DNA-binding domain of TraM.
2001
10.2210/pdb1dp3/pdb
pdb_00001dp3
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
6289.221
TRAM PROTEIN
TRAMM26
1
man
polymer
no
no
AKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMER
AKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMER
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
562
Escherichia coli
562
Escherichia coli
PET28A(+)
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2001-04-04
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
RCSB
Y
RCSB
1999-12-23
REL
REL
structures with acceptable covalent geometry
100
20
2D NOESY
3D-15N-NOESY-HSQC
HNHA
50 mM posphate buffer
4.0
ambient
300
K
50 mM phospate buffer
4.0
ambient
300
K
This structures are based on 438 NOE restraints derived from 15N labeled NOE-derived distance restraints, 115 distance restraints from 2D homonuclear NOESY experiments and 40 dihedral angle restraints. The dihedral restraints with random coil values for the flexible terminal part extracted from the HNHA spectra were not used in the structure calculations.
distance geometry; simulated annealing
13
lowest energy
unlabeled TraMM26, uniform labeled TraMM26 with 15N; 50mM phosphate buffer NA; 95% H2O 5% D2O
95% H2O/5% D2O
uniform labeled TraMM26 with 15N; 50mM phosphate buffer NA; 95% H2O 5% D2O
95% H2O/5% D2O
Bruker Analytical GmbH
collection
XwinNMR
2.5
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. Bax, A.
processing
NMRPipe
Kraulis, F.J.
data analysis
ANSIG
3.3
Brunger, A.T.
refinement
X-PLOR
3.851
Koradi, R., Billeter, M., Wuthrich, K.
data analysis
MOLMOL
2.6
Varian Inc.
collection
VNMR
5.2
600
Bruker
DMX
800
Bruker
DMX
600
Varian
UNITY INOVA
ALA
2
n
1
ALA
2
A
LYS
3
n
2
LYS
3
A
VAL
4
n
3
VAL
4
A
GLN
5
n
4
GLN
5
A
ALA
6
n
5
ALA
6
A
TYR
7
n
6
TYR
7
A
VAL
8
n
7
VAL
8
A
SER
9
n
8
SER
9
A
ASP
10
n
9
ASP
10
A
GLU
11
n
10
GLU
11
A
ILE
12
n
11
ILE
12
A
VAL
13
n
12
VAL
13
A
TYR
14
n
13
TYR
14
A
LYS
15
n
14
LYS
15
A
ILE
16
n
15
ILE
16
A
ASN
17
n
16
ASN
17
A
LYS
18
n
17
LYS
18
A
ILE
19
n
18
ILE
19
A
VAL
20
n
19
VAL
20
A
GLU
21
n
20
GLU
21
A
ARG
22
n
21
ARG
22
A
ARG
23
n
22
ARG
23
A
ARG
24
n
23
ARG
24
A
ALA
25
n
24
ALA
25
A
GLU
26
n
25
GLU
26
A
GLY
27
n
26
GLY
27
A
ALA
28
n
27
ALA
28
A
LYS
29
n
28
LYS
29
A
SER
30
n
29
SER
30
A
THR
31
n
30
THR
31
A
ASP
32
n
31
ASP
32
A
VAL
33
n
32
VAL
33
A
SER
34
n
33
SER
34
A
PHE
35
n
34
PHE
35
A
SER
36
n
35
SER
36
A
SER
37
n
36
SER
37
A
ILE
38
n
37
ILE
38
A
SER
39
n
38
SER
39
A
THR
40
n
39
THR
40
A
MET
41
n
40
MET
41
A
LEU
42
n
41
LEU
42
A
LEU
43
n
42
LEU
43
A
GLU
44
n
43
GLU
44
A
LEU
45
n
44
LEU
45
A
GLY
46
n
45
GLY
46
A
LEU
47
n
46
LEU
47
A
ARG
48
n
47
ARG
48
A
VAL
49
n
48
VAL
49
A
TYR
50
n
49
TYR
50
A
GLU
51
n
50
GLU
51
A
ALA
52
n
51
ALA
52
A
GLN
53
n
52
GLN
53
A
MET
54
n
53
MET
54
A
GLU
55
n
54
GLU
55
A
ARG
56
n
55
ARG
56
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
A
O
H
VAL
ALA
49
52
1.56
3
A
A
O
H
PHE
SER
35
39
1.54
3
A
A
O
H
VAL
ALA
49
52
1.59
4
A
A
O
H
PHE
SER
35
39
1.49
4
A
A
O
H
ARG
GLY
24
27
1.60
6
A
A
O
H
VAL
ALA
49
52
1.53
7
A
A
O
H
VAL
ALA
49
52
1.57
7
A
A
O
H
ASP
VAL
10
13
1.60
8
A
A
O
H
ASP
ILE
10
12
1.57
11
A
A
O
H
SER
THR
36
40
1.60
13
A
A
O
H
ASP
VAL
10
13
1.52
13
A
A
O
H
VAL
GLN
49
53
1.59
16
A
A
O
H
PHE
SER
35
39
1.59
18
A
A
O
HG
PHE
SER
35
39
1.41
18
A
A
O
H
GLU
ALA
21
25
1.49
19
A
A
O
H
GLU
ALA
21
25
1.50
19
A
A
O
H
ILE
ILE
12
16
1.56
20
A
A
O
H
GLU
ALA
21
25
1.53
20
A
A
O
H
PHE
SER
35
39
1.54
1
A
ARG
22
0.227
SIDE CHAIN
1
A
ARG
23
0.262
SIDE CHAIN
1
A
ARG
24
0.265
SIDE CHAIN
1
A
ARG
48
0.190
SIDE CHAIN
1
A
ARG
56
0.292
SIDE CHAIN
2
A
ARG
22
0.283
SIDE CHAIN
2
A
ARG
23
0.316
SIDE CHAIN
2
A
ARG
24
0.243
SIDE CHAIN
2
A
ARG
48
0.311
SIDE CHAIN
2
A
ARG
56
0.088
SIDE CHAIN
3
A
ARG
22
0.308
SIDE CHAIN
3
A
ARG
23
0.206
SIDE CHAIN
3
A
ARG
24
0.307
SIDE CHAIN
3
A
ARG
48
0.296
SIDE CHAIN
3
A
ARG
56
0.272
SIDE CHAIN
4
A
ARG
22
0.239
SIDE CHAIN
4
A
ARG
23
0.294
SIDE CHAIN
4
A
ARG
24
0.313
SIDE CHAIN
4
A
ARG
48
0.256
SIDE CHAIN
4
A
ARG
56
0.311
SIDE CHAIN
5
A
ARG
22
0.312
SIDE CHAIN
5
A
ARG
23
0.288
SIDE CHAIN
5
A
ARG
24
0.249
SIDE CHAIN
5
A
ARG
48
0.236
SIDE CHAIN
5
A
ARG
56
0.310
SIDE CHAIN
6
A
ARG
22
0.301
SIDE CHAIN
6
A
ARG
23
0.203
SIDE CHAIN
6
A
ARG
24
0.316
SIDE CHAIN
6
A
ARG
48
0.307
SIDE CHAIN
6
A
ARG
56
0.290
SIDE CHAIN
7
A
ARG
22
0.259
SIDE CHAIN
7
A
ARG
23
0.297
SIDE CHAIN
7
A
ARG
24
0.228
SIDE CHAIN
7
A
ARG
48
0.315
SIDE CHAIN
7
A
ARG
56
0.318
SIDE CHAIN
8
A
ARG
22
0.253
SIDE CHAIN
8
A
ARG
23
0.203
SIDE CHAIN
8
A
ARG
24
0.280
SIDE CHAIN
8
A
ARG
48
0.193
SIDE CHAIN
8
A
ARG
56
0.257
SIDE CHAIN
9
A
ARG
23
0.313
SIDE CHAIN
9
A
ARG
24
0.232
SIDE CHAIN
9
A
ARG
48
0.206
SIDE CHAIN
9
A
ARG
56
0.279
SIDE CHAIN
10
A
ARG
22
0.312
SIDE CHAIN
10
A
ARG
23
0.312
SIDE CHAIN
10
A
ARG
24
0.311
SIDE CHAIN
10
A
ARG
48
0.129
SIDE CHAIN
11
A
ARG
22
0.247
SIDE CHAIN
11
A
ARG
23
0.246
SIDE CHAIN
11
A
ARG
24
0.113
SIDE CHAIN
11
A
ARG
48
0.265
SIDE CHAIN
11
A
ARG
56
0.211
SIDE CHAIN
12
A
ARG
22
0.195
SIDE CHAIN
12
A
ARG
23
0.133
SIDE CHAIN
12
A
ARG
24
0.167
SIDE CHAIN
12
A
ARG
48
0.312
SIDE CHAIN
12
A
ARG
56
0.285
SIDE CHAIN
13
A
ARG
22
0.301
SIDE CHAIN
13
A
ARG
24
0.218
SIDE CHAIN
13
A
ARG
48
0.298
SIDE CHAIN
13
A
ARG
56
0.094
SIDE CHAIN
14
A
ARG
22
0.226
SIDE CHAIN
14
A
ARG
23
0.155
SIDE CHAIN
14
A
ARG
24
0.131
SIDE CHAIN
14
A
ARG
48
0.233
SIDE CHAIN
14
A
ARG
56
0.126
SIDE CHAIN
15
A
ARG
22
0.204
SIDE CHAIN
15
A
ARG
23
0.256
SIDE CHAIN
15
A
ARG
24
0.298
SIDE CHAIN
15
A
ARG
48
0.310
SIDE CHAIN
15
A
ARG
56
0.281
SIDE CHAIN
16
A
ARG
22
0.317
SIDE CHAIN
16
A
ARG
23
0.259
SIDE CHAIN
16
A
ARG
24
0.310
SIDE CHAIN
16
A
ARG
48
0.260
SIDE CHAIN
16
A
ARG
56
0.202
SIDE CHAIN
17
A
ARG
22
0.311
SIDE CHAIN
17
A
ARG
23
0.225
SIDE CHAIN
17
A
ARG
24
0.279
SIDE CHAIN
17
A
ARG
48
0.310
SIDE CHAIN
17
A
ARG
56
0.301
SIDE CHAIN
18
A
ARG
22
0.287
SIDE CHAIN
18
A
ARG
23
0.274
SIDE CHAIN
18
A
ARG
24
0.303
SIDE CHAIN
18
A
ARG
48
0.304
SIDE CHAIN
18
A
ARG
56
0.247
SIDE CHAIN
19
A
ARG
22
0.242
SIDE CHAIN
19
A
ARG
23
0.190
SIDE CHAIN
19
A
ARG
24
0.239
SIDE CHAIN
19
A
ARG
48
0.213
SIDE CHAIN
19
A
ARG
56
0.223
SIDE CHAIN
20
A
ARG
22
0.296
SIDE CHAIN
20
A
ARG
23
0.276
SIDE CHAIN
20
A
ARG
48
0.314
SIDE CHAIN
20
A
ARG
56
0.300
SIDE CHAIN
1
A
GLN
5
48.01
-162.44
1
A
ALA
6
61.01
124.21
1
A
SER
9
-123.35
-169.23
1
A
ASP
10
-59.90
78.69
1
A
ALA
28
-50.54
173.17
1
A
SER
30
62.63
146.64
1
A
THR
31
-89.20
32.42
1
A
LEU
47
47.37
22.69
1
A
ARG
48
-74.68
-120.74
1
A
GLU
55
45.22
-170.65
2
A
VAL
4
60.53
123.47
2
A
ALA
6
-166.93
90.13
2
A
TYR
7
-143.07
56.05
2
A
ASP
10
-60.02
78.07
2
A
ARG
23
-53.71
-71.23
2
A
LYS
29
-179.46
-32.00
2
A
SER
34
177.13
151.51
2
A
LEU
47
73.24
-3.22
2
A
VAL
49
-56.21
-113.05
2
A
GLU
55
38.80
-160.70
3
A
LYS
3
-170.53
-172.08
3
A
GLN
5
58.98
157.11
3
A
ALA
6
54.37
89.22
3
A
TYR
7
-160.62
50.94
3
A
VAL
8
-176.81
130.62
3
A
ASP
10
-63.24
71.31
3
A
ALA
28
-97.01
40.22
3
A
LYS
29
177.37
32.03
3
A
SER
30
52.36
-170.56
3
A
SER
34
179.09
148.05
3
A
LEU
47
50.69
14.73
3
A
ARG
48
-75.81
-73.27
3
A
GLU
55
-79.44
-165.60
4
A
LYS
3
56.65
73.25
4
A
GLN
5
54.86
164.65
4
A
ALA
6
175.47
48.01
4
A
TYR
7
47.84
73.88
4
A
ASP
10
-60.49
77.49
4
A
ALA
28
-36.05
144.54
4
A
LYS
29
179.74
-67.14
4
A
VAL
33
-45.80
173.71
4
A
LEU
47
77.17
-18.99
4
A
VAL
49
-53.28
-71.47
5
A
GLN
5
-66.62
-163.37
5
A
TYR
7
-66.05
-175.72
5
A
SER
9
43.24
-152.32
5
A
ASP
10
-31.95
90.09
5
A
LYS
29
-173.89
-35.19
5
A
SER
30
-43.44
155.31
5
A
THR
31
-86.54
39.61
5
A
LEU
47
73.58
-24.70
5
A
GLN
53
-87.31
33.58
5
A
GLU
55
-108.04
-165.39
6
A
VAL
4
52.16
90.04
6
A
GLN
5
-45.62
170.74
6
A
ALA
6
172.60
123.81
6
A
TYR
7
-161.72
65.42
6
A
VAL
8
-165.35
-43.25
6
A
SER
9
171.75
45.25
6
A
ALA
28
-49.70
174.59
6
A
LEU
47
33.12
34.52
6
A
VAL
49
-52.83
-105.66
6
A
GLU
55
-58.64
-174.65
7
A
GLN
5
-45.78
170.77
7
A
TYR
7
-105.53
-168.78
7
A
VAL
8
-69.37
89.76
7
A
SER
9
-87.85
-158.77
7
A
ASP
10
-56.28
81.81
7
A
ARG
23
-48.08
-71.64
7
A
ALA
28
-107.11
44.52
7
A
LYS
29
169.96
131.03
7
A
SER
30
-56.58
-160.28
7
A
SER
34
170.81
146.25
7
A
ARG
48
-76.72
-77.71
7
A
VAL
49
-39.42
-85.16
7
A
TYR
50
-33.42
-29.43
8
A
LYS
3
43.63
73.75
8
A
VAL
4
-124.25
-53.97
8
A
GLN
5
-179.12
-166.08
8
A
ALA
6
-172.03
89.64
8
A
TYR
7
56.73
159.66
8
A
ASP
10
-58.93
79.84
8
A
GLU
11
-66.40
60.45
8
A
ARG
23
-60.52
-83.55
8
A
ALA
28
-59.88
-160.06
8
A
THR
31
-107.30
40.03
8
A
VAL
33
-52.44
-168.44
8
A
LEU
47
43.59
24.98
8
A
VAL
49
-39.52
-96.06
8
A
TYR
50
-35.66
-29.70
9
A
ALA
6
-160.02
108.83
9
A
VAL
8
50.48
90.40
9
A
ASP
10
-62.47
73.14
9
A
LYS
29
163.17
34.09
9
A
SER
34
-175.52
146.29
9
A
LEU
47
35.47
31.48
9
A
ARG
48
-74.16
-88.46
10
A
LYS
3
-102.07
61.77
10
A
GLN
5
45.82
-167.22
10
A
ALA
6
66.04
89.95
10
A
TYR
7
-53.12
104.15
10
A
VAL
8
50.02
79.16
10
A
ASP
10
-62.09
78.09
10
A
ALA
28
-55.49
-162.69
10
A
LYS
29
-138.83
-45.88
10
A
SER
39
-61.63
-79.48
10
A
LEU
47
77.46
-32.30
10
A
MET
54
-154.49
-67.36
11
A
VAL
4
35.71
76.84
11
A
GLN
5
61.08
157.13
11
A
TYR
7
-119.06
51.78
11
A
VAL
8
-114.84
59.75
11
A
ALA
28
-53.77
-169.17
11
A
SER
34
-173.27
-179.25
11
A
ARG
48
-74.87
-81.37
11
A
GLN
53
-95.46
38.18
12
A
ALA
6
50.80
80.23
12
A
VAL
8
54.63
-89.93
12
A
ASP
10
-73.32
-128.90
12
A
LYS
18
-64.17
-76.67
12
A
SER
34
172.00
-175.04
12
A
THR
40
-48.51
-72.02
12
A
LEU
47
21.21
44.84
12
A
ARG
48
-75.32
-87.61
13
A
LYS
3
-101.97
48.13
13
A
GLN
5
43.20
-167.81
13
A
TYR
7
40.63
70.85
13
A
VAL
8
49.72
100.86
13
A
VAL
20
-44.49
-72.10
13
A
ALA
28
-56.83
-156.38
13
A
SER
30
-165.94
-166.47
13
A
SER
34
174.34
175.43
13
A
LEU
47
77.49
-22.15
14
A
VAL
4
-151.84
-38.83
14
A
SER
9
-105.40
-162.04
14
A
ASP
10
-58.70
80.61
14
A
ARG
23
-46.45
-75.94
14
A
ALA
28
-77.83
-165.43
14
A
LYS
29
-163.46
-168.72
14
A
SER
30
60.85
136.71
14
A
LEU
47
36.87
28.65
14
A
ARG
48
-74.53
-93.50
14
A
GLU
55
53.63
-177.54
15
A
GLN
5
-56.14
-165.44
15
A
ALA
6
177.76
91.37
15
A
ASP
10
-60.64
77.86
15
A
ALA
28
-50.91
-175.25
15
A
LYS
29
-138.94
-43.90
15
A
SER
34
170.05
139.39
15
A
LEU
47
68.82
-47.95
15
A
ARG
48
-44.88
-71.94
15
A
MET
54
-90.95
-72.29
16
A
ALA
6
-160.62
78.48
16
A
ASP
10
-59.69
78.61
16
A
VAL
20
-60.20
-72.54
16
A
SER
30
59.57
168.43
16
A
THR
31
-85.86
38.37
16
A
SER
34
174.32
148.91
16
A
LEU
47
53.33
18.28
16
A
ARG
48
-74.22
-93.46
16
A
GLU
55
44.66
-170.44
17
A
LYS
3
55.39
-178.36
17
A
VAL
4
58.20
72.40
17
A
GLN
5
52.48
175.04
17
A
TYR
7
48.48
80.90
17
A
VAL
8
-176.53
42.24
17
A
SER
9
-109.02
-163.02
17
A
ASP
10
-59.32
79.83
17
A
LYS
29
-179.59
-62.26
17
A
SER
30
-106.68
40.01
17
A
VAL
33
-57.28
-157.18
17
A
SER
34
-169.18
-158.49
17
A
LEU
47
77.12
-15.27
17
A
ARG
48
-74.78
-79.34
17
A
MET
54
49.95
28.93
18
A
LYS
3
63.39
118.27
18
A
GLN
5
55.41
165.29
18
A
ALA
6
-177.58
54.89
18
A
TYR
7
52.26
104.41
18
A
VAL
8
63.75
-70.42
18
A
SER
9
-172.87
130.44
18
A
ALA
28
-66.29
-176.45
18
A
LYS
29
-160.47
-162.28
18
A
SER
30
62.16
146.26
18
A
SER
34
-176.91
145.12
18
A
LEU
47
40.99
25.30
18
A
ARG
48
-75.00
-75.28
18
A
MET
54
49.28
27.30
18
A
GLU
55
49.71
-174.70
19
A
LYS
3
-151.87
78.13
19
A
GLN
5
46.77
-165.39
19
A
ALA
6
174.82
117.93
19
A
TYR
7
-46.17
152.17
19
A
VAL
8
53.93
80.97
19
A
ASP
10
-60.24
78.21
19
A
ARG
23
-44.39
-71.52
19
A
ALA
28
-96.46
31.38
19
A
LYS
29
160.52
-162.76
19
A
SER
30
-90.00
38.48
19
A
THR
31
-89.15
40.99
19
A
VAL
33
-55.56
-158.36
19
A
VAL
49
-43.94
-90.57
20
A
LYS
3
-168.17
115.51
20
A
ALA
6
66.09
122.68
20
A
VAL
8
33.85
79.65
20
A
ASP
10
-60.13
77.81
20
A
LYS
29
179.57
161.67
20
A
SER
30
-87.84
40.58
20
A
THR
31
-105.87
44.16
20
A
VAL
33
-57.00
-151.98
20
A
SER
34
-147.59
-154.46
20
A
SER
37
-72.59
-76.62
20
A
SER
39
-55.95
-79.05
20
A
LEU
47
77.90
-36.89
SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF THE TRAM PROTEIN
1
N
N
A
ASP
10
A
ASP
9
HELX_P
A
GLY
27
A
GLY
26
1
1
18
A
SER
34
A
SER
33
HELX_P
A
GLY
46
A
GLY
45
1
2
13
A
LEU
47
A
LEU
46
HELX_P
A
GLN
53
A
GLN
52
1
3
7
DNA BINDING PROTEIN
helix-loop-helix, DNA BINDING PROTEIN
TRAM2_ECOLI
UNP
1
P07294
2
56
1DP3
2
56
P07294
A
1
1
55
1
P 1