1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Stockner, T. Plugariu, C. Koraimann, G. Hoegenauer, G. Bermel, W. Prytulla, S. Sterk, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 40 3370 3377 10.1021/bi002031c 11258958 Solution structure of the DNA-binding domain of TraM. 2001 10.2210/pdb1dp3/pdb pdb_00001dp3 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 6289.221 TRAM PROTEIN TRAMM26 1 man polymer no no AKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMER AKVQAYVSDEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELGLRVYEAQMER A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample 562 Escherichia coli 562 Escherichia coli PET28A(+) database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2001-04-04 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name RCSB Y RCSB 1999-12-23 REL REL structures with acceptable covalent geometry 100 20 2D NOESY 3D-15N-NOESY-HSQC HNHA 50 mM posphate buffer 4.0 ambient 300 K 50 mM phospate buffer 4.0 ambient 300 K This structures are based on 438 NOE restraints derived from 15N labeled NOE-derived distance restraints, 115 distance restraints from 2D homonuclear NOESY experiments and 40 dihedral angle restraints. The dihedral restraints with random coil values for the flexible terminal part extracted from the HNHA spectra were not used in the structure calculations. distance geometry; simulated annealing 13 lowest energy unlabeled TraMM26, uniform labeled TraMM26 with 15N; 50mM phosphate buffer NA; 95% H2O 5% D2O 95% H2O/5% D2O uniform labeled TraMM26 with 15N; 50mM phosphate buffer NA; 95% H2O 5% D2O 95% H2O/5% D2O Bruker Analytical GmbH collection XwinNMR 2.5 Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J. Bax, A. processing NMRPipe Kraulis, F.J. data analysis ANSIG 3.3 Brunger, A.T. refinement X-PLOR 3.851 Koradi, R., Billeter, M., Wuthrich, K. data analysis MOLMOL 2.6 Varian Inc. collection VNMR 5.2 600 Bruker DMX 800 Bruker DMX 600 Varian UNITY INOVA ALA 2 n 1 ALA 2 A LYS 3 n 2 LYS 3 A VAL 4 n 3 VAL 4 A GLN 5 n 4 GLN 5 A ALA 6 n 5 ALA 6 A TYR 7 n 6 TYR 7 A VAL 8 n 7 VAL 8 A SER 9 n 8 SER 9 A ASP 10 n 9 ASP 10 A GLU 11 n 10 GLU 11 A ILE 12 n 11 ILE 12 A VAL 13 n 12 VAL 13 A TYR 14 n 13 TYR 14 A LYS 15 n 14 LYS 15 A ILE 16 n 15 ILE 16 A ASN 17 n 16 ASN 17 A LYS 18 n 17 LYS 18 A ILE 19 n 18 ILE 19 A VAL 20 n 19 VAL 20 A GLU 21 n 20 GLU 21 A ARG 22 n 21 ARG 22 A ARG 23 n 22 ARG 23 A ARG 24 n 23 ARG 24 A ALA 25 n 24 ALA 25 A GLU 26 n 25 GLU 26 A GLY 27 n 26 GLY 27 A ALA 28 n 27 ALA 28 A LYS 29 n 28 LYS 29 A SER 30 n 29 SER 30 A THR 31 n 30 THR 31 A ASP 32 n 31 ASP 32 A VAL 33 n 32 VAL 33 A SER 34 n 33 SER 34 A PHE 35 n 34 PHE 35 A SER 36 n 35 SER 36 A SER 37 n 36 SER 37 A ILE 38 n 37 ILE 38 A SER 39 n 38 SER 39 A THR 40 n 39 THR 40 A MET 41 n 40 MET 41 A LEU 42 n 41 LEU 42 A LEU 43 n 42 LEU 43 A GLU 44 n 43 GLU 44 A LEU 45 n 44 LEU 45 A GLY 46 n 45 GLY 46 A LEU 47 n 46 LEU 47 A ARG 48 n 47 ARG 48 A VAL 49 n 48 VAL 49 A TYR 50 n 49 TYR 50 A GLU 51 n 50 GLU 51 A ALA 52 n 51 ALA 52 A GLN 53 n 52 GLN 53 A MET 54 n 53 MET 54 A GLU 55 n 54 GLU 55 A ARG 56 n 55 ARG 56 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A A O H VAL ALA 49 52 1.56 3 A A O H PHE SER 35 39 1.54 3 A A O H VAL ALA 49 52 1.59 4 A A O H PHE SER 35 39 1.49 4 A A O H ARG GLY 24 27 1.60 6 A A O H VAL ALA 49 52 1.53 7 A A O H VAL ALA 49 52 1.57 7 A A O H ASP VAL 10 13 1.60 8 A A O H ASP ILE 10 12 1.57 11 A A O H SER THR 36 40 1.60 13 A A O H ASP VAL 10 13 1.52 13 A A O H VAL GLN 49 53 1.59 16 A A O H PHE SER 35 39 1.59 18 A A O HG PHE SER 35 39 1.41 18 A A O H GLU ALA 21 25 1.49 19 A A O H GLU ALA 21 25 1.50 19 A A O H ILE ILE 12 16 1.56 20 A A O H GLU ALA 21 25 1.53 20 A A O H PHE SER 35 39 1.54 1 A ARG 22 0.227 SIDE CHAIN 1 A ARG 23 0.262 SIDE CHAIN 1 A ARG 24 0.265 SIDE CHAIN 1 A ARG 48 0.190 SIDE CHAIN 1 A ARG 56 0.292 SIDE CHAIN 2 A ARG 22 0.283 SIDE CHAIN 2 A ARG 23 0.316 SIDE CHAIN 2 A ARG 24 0.243 SIDE CHAIN 2 A ARG 48 0.311 SIDE CHAIN 2 A ARG 56 0.088 SIDE CHAIN 3 A ARG 22 0.308 SIDE CHAIN 3 A ARG 23 0.206 SIDE CHAIN 3 A ARG 24 0.307 SIDE CHAIN 3 A ARG 48 0.296 SIDE CHAIN 3 A ARG 56 0.272 SIDE CHAIN 4 A ARG 22 0.239 SIDE CHAIN 4 A ARG 23 0.294 SIDE CHAIN 4 A ARG 24 0.313 SIDE CHAIN 4 A ARG 48 0.256 SIDE CHAIN 4 A ARG 56 0.311 SIDE CHAIN 5 A ARG 22 0.312 SIDE CHAIN 5 A ARG 23 0.288 SIDE CHAIN 5 A ARG 24 0.249 SIDE CHAIN 5 A ARG 48 0.236 SIDE CHAIN 5 A ARG 56 0.310 SIDE CHAIN 6 A ARG 22 0.301 SIDE CHAIN 6 A ARG 23 0.203 SIDE CHAIN 6 A ARG 24 0.316 SIDE CHAIN 6 A ARG 48 0.307 SIDE CHAIN 6 A ARG 56 0.290 SIDE CHAIN 7 A ARG 22 0.259 SIDE CHAIN 7 A ARG 23 0.297 SIDE CHAIN 7 A ARG 24 0.228 SIDE CHAIN 7 A ARG 48 0.315 SIDE CHAIN 7 A ARG 56 0.318 SIDE CHAIN 8 A ARG 22 0.253 SIDE CHAIN 8 A ARG 23 0.203 SIDE CHAIN 8 A ARG 24 0.280 SIDE CHAIN 8 A ARG 48 0.193 SIDE CHAIN 8 A ARG 56 0.257 SIDE CHAIN 9 A ARG 23 0.313 SIDE CHAIN 9 A ARG 24 0.232 SIDE CHAIN 9 A ARG 48 0.206 SIDE CHAIN 9 A ARG 56 0.279 SIDE CHAIN 10 A ARG 22 0.312 SIDE CHAIN 10 A ARG 23 0.312 SIDE CHAIN 10 A ARG 24 0.311 SIDE CHAIN 10 A ARG 48 0.129 SIDE CHAIN 11 A ARG 22 0.247 SIDE CHAIN 11 A ARG 23 0.246 SIDE CHAIN 11 A ARG 24 0.113 SIDE CHAIN 11 A ARG 48 0.265 SIDE CHAIN 11 A ARG 56 0.211 SIDE CHAIN 12 A ARG 22 0.195 SIDE CHAIN 12 A ARG 23 0.133 SIDE CHAIN 12 A ARG 24 0.167 SIDE CHAIN 12 A ARG 48 0.312 SIDE CHAIN 12 A ARG 56 0.285 SIDE CHAIN 13 A ARG 22 0.301 SIDE CHAIN 13 A ARG 24 0.218 SIDE CHAIN 13 A ARG 48 0.298 SIDE CHAIN 13 A ARG 56 0.094 SIDE CHAIN 14 A ARG 22 0.226 SIDE CHAIN 14 A ARG 23 0.155 SIDE CHAIN 14 A ARG 24 0.131 SIDE CHAIN 14 A ARG 48 0.233 SIDE CHAIN 14 A ARG 56 0.126 SIDE CHAIN 15 A ARG 22 0.204 SIDE CHAIN 15 A ARG 23 0.256 SIDE CHAIN 15 A ARG 24 0.298 SIDE CHAIN 15 A ARG 48 0.310 SIDE CHAIN 15 A ARG 56 0.281 SIDE CHAIN 16 A ARG 22 0.317 SIDE CHAIN 16 A ARG 23 0.259 SIDE CHAIN 16 A ARG 24 0.310 SIDE CHAIN 16 A ARG 48 0.260 SIDE CHAIN 16 A ARG 56 0.202 SIDE CHAIN 17 A ARG 22 0.311 SIDE CHAIN 17 A ARG 23 0.225 SIDE CHAIN 17 A ARG 24 0.279 SIDE CHAIN 17 A ARG 48 0.310 SIDE CHAIN 17 A ARG 56 0.301 SIDE CHAIN 18 A ARG 22 0.287 SIDE CHAIN 18 A ARG 23 0.274 SIDE CHAIN 18 A ARG 24 0.303 SIDE CHAIN 18 A ARG 48 0.304 SIDE CHAIN 18 A ARG 56 0.247 SIDE CHAIN 19 A ARG 22 0.242 SIDE CHAIN 19 A ARG 23 0.190 SIDE CHAIN 19 A ARG 24 0.239 SIDE CHAIN 19 A ARG 48 0.213 SIDE CHAIN 19 A ARG 56 0.223 SIDE CHAIN 20 A ARG 22 0.296 SIDE CHAIN 20 A ARG 23 0.276 SIDE CHAIN 20 A ARG 48 0.314 SIDE CHAIN 20 A ARG 56 0.300 SIDE CHAIN 1 A GLN 5 48.01 -162.44 1 A ALA 6 61.01 124.21 1 A SER 9 -123.35 -169.23 1 A ASP 10 -59.90 78.69 1 A ALA 28 -50.54 173.17 1 A SER 30 62.63 146.64 1 A THR 31 -89.20 32.42 1 A LEU 47 47.37 22.69 1 A ARG 48 -74.68 -120.74 1 A GLU 55 45.22 -170.65 2 A VAL 4 60.53 123.47 2 A ALA 6 -166.93 90.13 2 A TYR 7 -143.07 56.05 2 A ASP 10 -60.02 78.07 2 A ARG 23 -53.71 -71.23 2 A LYS 29 -179.46 -32.00 2 A SER 34 177.13 151.51 2 A LEU 47 73.24 -3.22 2 A VAL 49 -56.21 -113.05 2 A GLU 55 38.80 -160.70 3 A LYS 3 -170.53 -172.08 3 A GLN 5 58.98 157.11 3 A ALA 6 54.37 89.22 3 A TYR 7 -160.62 50.94 3 A VAL 8 -176.81 130.62 3 A ASP 10 -63.24 71.31 3 A ALA 28 -97.01 40.22 3 A LYS 29 177.37 32.03 3 A SER 30 52.36 -170.56 3 A SER 34 179.09 148.05 3 A LEU 47 50.69 14.73 3 A ARG 48 -75.81 -73.27 3 A GLU 55 -79.44 -165.60 4 A LYS 3 56.65 73.25 4 A GLN 5 54.86 164.65 4 A ALA 6 175.47 48.01 4 A TYR 7 47.84 73.88 4 A ASP 10 -60.49 77.49 4 A ALA 28 -36.05 144.54 4 A LYS 29 179.74 -67.14 4 A VAL 33 -45.80 173.71 4 A LEU 47 77.17 -18.99 4 A VAL 49 -53.28 -71.47 5 A GLN 5 -66.62 -163.37 5 A TYR 7 -66.05 -175.72 5 A SER 9 43.24 -152.32 5 A ASP 10 -31.95 90.09 5 A LYS 29 -173.89 -35.19 5 A SER 30 -43.44 155.31 5 A THR 31 -86.54 39.61 5 A LEU 47 73.58 -24.70 5 A GLN 53 -87.31 33.58 5 A GLU 55 -108.04 -165.39 6 A VAL 4 52.16 90.04 6 A GLN 5 -45.62 170.74 6 A ALA 6 172.60 123.81 6 A TYR 7 -161.72 65.42 6 A VAL 8 -165.35 -43.25 6 A SER 9 171.75 45.25 6 A ALA 28 -49.70 174.59 6 A LEU 47 33.12 34.52 6 A VAL 49 -52.83 -105.66 6 A GLU 55 -58.64 -174.65 7 A GLN 5 -45.78 170.77 7 A TYR 7 -105.53 -168.78 7 A VAL 8 -69.37 89.76 7 A SER 9 -87.85 -158.77 7 A ASP 10 -56.28 81.81 7 A ARG 23 -48.08 -71.64 7 A ALA 28 -107.11 44.52 7 A LYS 29 169.96 131.03 7 A SER 30 -56.58 -160.28 7 A SER 34 170.81 146.25 7 A ARG 48 -76.72 -77.71 7 A VAL 49 -39.42 -85.16 7 A TYR 50 -33.42 -29.43 8 A LYS 3 43.63 73.75 8 A VAL 4 -124.25 -53.97 8 A GLN 5 -179.12 -166.08 8 A ALA 6 -172.03 89.64 8 A TYR 7 56.73 159.66 8 A ASP 10 -58.93 79.84 8 A GLU 11 -66.40 60.45 8 A ARG 23 -60.52 -83.55 8 A ALA 28 -59.88 -160.06 8 A THR 31 -107.30 40.03 8 A VAL 33 -52.44 -168.44 8 A LEU 47 43.59 24.98 8 A VAL 49 -39.52 -96.06 8 A TYR 50 -35.66 -29.70 9 A ALA 6 -160.02 108.83 9 A VAL 8 50.48 90.40 9 A ASP 10 -62.47 73.14 9 A LYS 29 163.17 34.09 9 A SER 34 -175.52 146.29 9 A LEU 47 35.47 31.48 9 A ARG 48 -74.16 -88.46 10 A LYS 3 -102.07 61.77 10 A GLN 5 45.82 -167.22 10 A ALA 6 66.04 89.95 10 A TYR 7 -53.12 104.15 10 A VAL 8 50.02 79.16 10 A ASP 10 -62.09 78.09 10 A ALA 28 -55.49 -162.69 10 A LYS 29 -138.83 -45.88 10 A SER 39 -61.63 -79.48 10 A LEU 47 77.46 -32.30 10 A MET 54 -154.49 -67.36 11 A VAL 4 35.71 76.84 11 A GLN 5 61.08 157.13 11 A TYR 7 -119.06 51.78 11 A VAL 8 -114.84 59.75 11 A ALA 28 -53.77 -169.17 11 A SER 34 -173.27 -179.25 11 A ARG 48 -74.87 -81.37 11 A GLN 53 -95.46 38.18 12 A ALA 6 50.80 80.23 12 A VAL 8 54.63 -89.93 12 A ASP 10 -73.32 -128.90 12 A LYS 18 -64.17 -76.67 12 A SER 34 172.00 -175.04 12 A THR 40 -48.51 -72.02 12 A LEU 47 21.21 44.84 12 A ARG 48 -75.32 -87.61 13 A LYS 3 -101.97 48.13 13 A GLN 5 43.20 -167.81 13 A TYR 7 40.63 70.85 13 A VAL 8 49.72 100.86 13 A VAL 20 -44.49 -72.10 13 A ALA 28 -56.83 -156.38 13 A SER 30 -165.94 -166.47 13 A SER 34 174.34 175.43 13 A LEU 47 77.49 -22.15 14 A VAL 4 -151.84 -38.83 14 A SER 9 -105.40 -162.04 14 A ASP 10 -58.70 80.61 14 A ARG 23 -46.45 -75.94 14 A ALA 28 -77.83 -165.43 14 A LYS 29 -163.46 -168.72 14 A SER 30 60.85 136.71 14 A LEU 47 36.87 28.65 14 A ARG 48 -74.53 -93.50 14 A GLU 55 53.63 -177.54 15 A GLN 5 -56.14 -165.44 15 A ALA 6 177.76 91.37 15 A ASP 10 -60.64 77.86 15 A ALA 28 -50.91 -175.25 15 A LYS 29 -138.94 -43.90 15 A SER 34 170.05 139.39 15 A LEU 47 68.82 -47.95 15 A ARG 48 -44.88 -71.94 15 A MET 54 -90.95 -72.29 16 A ALA 6 -160.62 78.48 16 A ASP 10 -59.69 78.61 16 A VAL 20 -60.20 -72.54 16 A SER 30 59.57 168.43 16 A THR 31 -85.86 38.37 16 A SER 34 174.32 148.91 16 A LEU 47 53.33 18.28 16 A ARG 48 -74.22 -93.46 16 A GLU 55 44.66 -170.44 17 A LYS 3 55.39 -178.36 17 A VAL 4 58.20 72.40 17 A GLN 5 52.48 175.04 17 A TYR 7 48.48 80.90 17 A VAL 8 -176.53 42.24 17 A SER 9 -109.02 -163.02 17 A ASP 10 -59.32 79.83 17 A LYS 29 -179.59 -62.26 17 A SER 30 -106.68 40.01 17 A VAL 33 -57.28 -157.18 17 A SER 34 -169.18 -158.49 17 A LEU 47 77.12 -15.27 17 A ARG 48 -74.78 -79.34 17 A MET 54 49.95 28.93 18 A LYS 3 63.39 118.27 18 A GLN 5 55.41 165.29 18 A ALA 6 -177.58 54.89 18 A TYR 7 52.26 104.41 18 A VAL 8 63.75 -70.42 18 A SER 9 -172.87 130.44 18 A ALA 28 -66.29 -176.45 18 A LYS 29 -160.47 -162.28 18 A SER 30 62.16 146.26 18 A SER 34 -176.91 145.12 18 A LEU 47 40.99 25.30 18 A ARG 48 -75.00 -75.28 18 A MET 54 49.28 27.30 18 A GLU 55 49.71 -174.70 19 A LYS 3 -151.87 78.13 19 A GLN 5 46.77 -165.39 19 A ALA 6 174.82 117.93 19 A TYR 7 -46.17 152.17 19 A VAL 8 53.93 80.97 19 A ASP 10 -60.24 78.21 19 A ARG 23 -44.39 -71.52 19 A ALA 28 -96.46 31.38 19 A LYS 29 160.52 -162.76 19 A SER 30 -90.00 38.48 19 A THR 31 -89.15 40.99 19 A VAL 33 -55.56 -158.36 19 A VAL 49 -43.94 -90.57 20 A LYS 3 -168.17 115.51 20 A ALA 6 66.09 122.68 20 A VAL 8 33.85 79.65 20 A ASP 10 -60.13 77.81 20 A LYS 29 179.57 161.67 20 A SER 30 -87.84 40.58 20 A THR 31 -105.87 44.16 20 A VAL 33 -57.00 -151.98 20 A SER 34 -147.59 -154.46 20 A SER 37 -72.59 -76.62 20 A SER 39 -55.95 -79.05 20 A LEU 47 77.90 -36.89 SOLUTION STRUCTURE OF THE DNA BINDING DOMAIN OF THE TRAM PROTEIN 1 N N A ASP 10 A ASP 9 HELX_P A GLY 27 A GLY 26 1 1 18 A SER 34 A SER 33 HELX_P A GLY 46 A GLY 45 1 2 13 A LEU 47 A LEU 46 HELX_P A GLN 53 A GLN 52 1 3 7 DNA BINDING PROTEIN helix-loop-helix, DNA BINDING PROTEIN TRAM2_ECOLI UNP 1 P07294 2 56 1DP3 2 56 P07294 A 1 1 55 1 P 1