0.007939
0.004584
0.000000
0.000000
0.009167
0.000000
0.000000
0.000000
0.008443
0.00000
0.00000
0.00000
Sutton, R.B.
Ernst, J.A.
Brunger, A.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
125.959
125.959
118.438
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
N
N
159
S
C
N
160
N
C
N
161
N
O
N
162
S
C
N
163
N
C
N
164
N
C
N
165
N
C
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
O
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
N
N
203
S
C
N
204
N
C
N
205
N
O
N
206
N
C
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
N
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
N
N
228
S
C
N
229
N
C
N
230
N
O
N
231
N
C
N
232
N
C
N
233
N
S
N
234
N
C
N
235
N
O
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
MG
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
S
N
303
N
O
N
304
N
O
N
305
N
O
N
306
N
O
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
R
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
N
Y
333
N
C
Y
334
N
C
Y
335
N
C
Y
336
N
C
Y
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
N
N
352
S
C
N
353
N
C
N
354
N
O
N
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
N
362
N
O
N
363
N
O
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
N
N
376
S
C
N
377
N
C
N
378
N
O
N
379
N
C
N
380
N
C
N
381
N
C
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
doub
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
doub
Y
324
N
sing
Y
325
N
sing
N
326
N
sing
Y
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
doub
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
Y
347
N
doub
Y
348
N
sing
Y
349
N
sing
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
doub
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
US
J.Cell Biol.
JCLBA3
2019
0021-9525
147
589
598
10.1083/jcb.147.3.589
10545502
Crystal structure of the cytosolic C2A-C2B domains of synaptotagmin III. Implications for Ca(+2)-independent snare complex interaction.
1999
10.2210/pdb1dqv/pdb
pdb_00001dqv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
293.0
1
CCD
1998-03-13
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
BL1-5
SSRL
1.00
SYNCHROTRON
SSRL BEAMLINE BL1-5
SOLUBLE PORTION
33253.914
SYNAPTOTAGMIN III
C2A/C2B
1
man
polymer
24.305
MAGNESIUM ION
4
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
no
no
EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL
AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIK
ASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGV
CRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSFTKGGKGLSEKENSE
EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPL
AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIK
ASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGV
CRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEKTLSSFTKGGKGLSEKENSE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
black rat
Rattus
Escherichia
sample
10117
BRAIN
Rattus rattus
562
Escherichia coli
PET28A
11
4.08
69.82
VAPOR DIFFUSION, HANGING DROP
6.5
1.6M Magnesium Sulfate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
chem_comp_atom
chem_comp_bond
database_2
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-01-19
1
1
2008-04-27
1
2
2011-07-13
1
3
2024-02-07
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Isolated C2A domain of synaptotagmin I
RCSB
Y
RCSB
2000-01-05
REL
MG
MAGNESIUM ION
SO4
SULFATE ION
MG
570
2
MG
MG
590
A
MG
571
2
MG
MG
591
A
MG
572
2
MG
MG
592
A
MG
573
2
MG
MG
593
A
SO4
574
3
SO4
SO4
594
A
n
1
293
A
n
2
294
A
GLY
295
n
3
GLY
295
A
ALA
296
n
4
ALA
296
A
PRO
297
n
5
PRO
297
A
CYS
298
n
6
CYS
298
A
GLY
299
n
7
GLY
299
A
ARG
300
n
8
ARG
300
A
ILE
301
n
9
ILE
301
A
SER
302
n
10
SER
302
A
PHE
303
n
11
PHE
303
A
ALA
304
n
12
ALA
304
A
LEU
305
n
13
LEU
305
A
ARG
306
n
14
ARG
306
A
TYR
307
n
15
TYR
307
A
LEU
308
n
16
LEU
308
A
TYR
309
n
17
TYR
309
A
GLY
310
n
18
GLY
310
A
SER
311
n
19
SER
311
A
ASP
312
n
20
ASP
312
A
GLN
313
n
21
GLN
313
A
LEU
314
n
22
LEU
314
A
VAL
315
n
23
VAL
315
A
VAL
316
n
24
VAL
316
A
ARG
317
n
25
ARG
317
A
ILE
318
n
26
ILE
318
A
LEU
319
n
27
LEU
319
A
GLN
320
n
28
GLN
320
A
ALA
321
n
29
ALA
321
A
LEU
322
n
30
LEU
322
A
ASP
323
n
31
ASP
323
A
LEU
324
n
32
LEU
324
A
PRO
325
n
33
PRO
325
A
ALA
326
n
34
ALA
326
A
LYS
327
n
35
LYS
327
A
ASP
328
n
36
ASP
328
A
SER
329
n
37
SER
329
A
ASN
330
n
38
ASN
330
A
GLY
331
n
39
GLY
331
A
PHE
332
n
40
PHE
332
A
SER
333
n
41
SER
333
A
ASP
334
n
42
ASP
334
A
PRO
335
n
43
PRO
335
A
TYR
336
n
44
TYR
336
A
VAL
337
n
45
VAL
337
A
LYS
338
n
46
LYS
338
A
ILE
339
n
47
ILE
339
A
TYR
340
n
48
TYR
340
A
LEU
341
n
49
LEU
341
A
LEU
342
n
50
LEU
342
A
PRO
343
n
51
PRO
343
A
ASP
344
n
52
ASP
344
A
ARG
345
n
53
ARG
345
A
LYS
346
n
54
LYS
346
A
LYS
347
n
55
LYS
347
A
LYS
348
n
56
LYS
348
A
PHE
349
n
57
PHE
349
A
GLN
350
n
58
GLN
350
A
THR
351
n
59
THR
351
A
LYS
352
n
60
LYS
352
A
VAL
353
n
61
VAL
353
A
HIS
354
n
62
HIS
354
A
ARG
355
n
63
ARG
355
A
LYS
356
n
64
LYS
356
A
THR
357
n
65
THR
357
A
LEU
358
n
66
LEU
358
A
ASN
359
n
67
ASN
359
A
PRO
360
n
68
PRO
360
A
ILE
361
n
69
ILE
361
A
PHE
362
n
70
PHE
362
A
ASN
363
n
71
ASN
363
A
GLU
364
n
72
GLU
364
A
THR
365
n
73
THR
365
A
PHE
366
n
74
PHE
366
A
GLN
367
n
75
GLN
367
A
PHE
368
n
76
PHE
368
A
SER
369
n
77
SER
369
A
VAL
370
n
78
VAL
370
A
PRO
371
n
79
PRO
371
A
LEU
372
n
80
LEU
372
A
ALA
373
n
81
ALA
373
A
GLU
374
n
82
GLU
374
A
LEU
375
n
83
LEU
375
A
ALA
376
n
84
ALA
376
A
GLN
377
n
85
GLN
377
A
ARG
378
n
86
ARG
378
A
LYS
379
n
87
LYS
379
A
LEU
380
n
88
LEU
380
A
HIS
381
n
89
HIS
381
A
PHE
382
n
90
PHE
382
A
SER
383
n
91
SER
383
A
VAL
384
n
92
VAL
384
A
TYR
385
n
93
TYR
385
A
ASP
386
n
94
ASP
386
A
PHE
387
n
95
PHE
387
A
ASP
388
n
96
ASP
388
A
ARG
389
n
97
ARG
389
A
PHE
390
n
98
PHE
390
A
SER
391
n
99
SER
391
A
ARG
392
n
100
ARG
392
A
HIS
393
n
101
HIS
393
A
ASP
394
n
102
ASP
394
A
LEU
395
n
103
LEU
395
A
ILE
396
n
104
ILE
396
A
GLY
397
n
105
GLY
397
A
GLN
398
n
106
GLN
398
A
VAL
399
n
107
VAL
399
A
VAL
400
n
108
VAL
400
A
LEU
401
n
109
LEU
401
A
ASP
402
n
110
ASP
402
A
ASN
403
n
111
ASN
403
A
LEU
404
n
112
LEU
404
A
LEU
405
n
113
LEU
405
A
GLU
406
n
114
GLU
406
A
LEU
407
n
115
LEU
407
A
ALA
408
n
116
ALA
408
A
GLU
409
n
117
GLU
409
A
GLN
410
n
118
GLN
410
A
CPR
411
n
119
PRO
411
A
PRO
412
n
120
PRO
412
A
ASP
413
n
121
ASP
413
A
ARG
414
n
122
ARG
414
A
PRO
415
n
123
PRO
415
A
LEU
416
n
124
LEU
416
A
TRP
417
n
125
TRP
417
A
ARG
418
n
126
ARG
418
A
ASP
419
n
127
ASP
419
A
ILE
420
n
128
ILE
420
A
LEU
421
n
129
LEU
421
A
GLU
422
n
130
GLU
422
A
GLY
423
n
131
GLY
423
A
GLY
424
n
132
GLY
424
A
SER
425
n
133
SER
425
A
GLU
426
n
134
GLU
426
A
LYS
427
n
135
LYS
427
A
ALA
428
n
136
ALA
428
A
ASP
429
n
137
ASP
429
A
LEU
430
n
138
LEU
430
A
GLY
431
n
139
GLY
431
A
GLU
432
n
140
GLU
432
A
LEU
433
n
141
LEU
433
A
ASN
434
n
142
ASN
434
A
PHE
435
n
143
PHE
435
A
SER
436
n
144
SER
436
A
LEU
437
n
145
LEU
437
A
CYS
438
n
146
CYS
438
A
TYR
439
n
147
TYR
439
A
LEU
440
n
148
LEU
440
A
PRO
441
n
149
PRO
441
A
THR
442
n
150
THR
442
A
ALA
443
n
151
ALA
443
A
GLY
444
n
152
GLY
444
A
LEU
445
n
153
LEU
445
A
LEU
446
n
154
LEU
446
A
THR
447
n
155
THR
447
A
VAL
448
n
156
VAL
448
A
THR
449
n
157
THR
449
A
ILE
450
n
158
ILE
450
A
ILE
451
n
159
ILE
451
A
LYS
452
n
160
LYS
452
A
ALA
453
n
161
ALA
453
A
SER
454
n
162
SER
454
A
ASN
455
n
163
ASN
455
A
LEU
456
n
164
LEU
456
A
LYS
457
n
165
LYS
457
A
ALA
458
n
166
ALA
458
A
MET
459
n
167
MET
459
A
ASP
460
n
168
ASP
460
A
LEU
461
n
169
LEU
461
A
THR
462
n
170
THR
462
A
GLY
463
n
171
GLY
463
A
PHE
464
n
172
PHE
464
A
SER
465
n
173
SER
465
A
ASP
466
n
174
ASP
466
A
PRO
467
n
175
PRO
467
A
TYR
468
n
176
TYR
468
A
VAL
469
n
177
VAL
469
A
LYS
470
n
178
LYS
470
A
ALA
471
n
179
ALA
471
A
SER
472
n
180
SER
472
A
LEU
473
n
181
LEU
473
A
ILE
474
n
182
ILE
474
A
SER
475
n
183
SER
475
A
GLU
476
n
184
GLU
476
A
GLY
477
n
185
GLY
477
A
ARG
478
n
186
ARG
478
A
ARG
479
n
187
ARG
479
A
LEU
480
n
188
LEU
480
A
LYS
481
n
189
LYS
481
A
LYS
482
n
190
LYS
482
A
ARG
483
n
191
ARG
483
A
LYS
484
n
192
LYS
484
A
THR
485
n
193
THR
485
A
SER
486
n
194
SER
486
A
ILE
487
n
195
ILE
487
A
LYS
488
n
196
LYS
488
A
LYS
489
n
197
LYS
489
A
ASN
490
n
198
ASN
490
A
THR
491
n
199
THR
491
A
LEU
492
n
200
LEU
492
A
ASN
493
n
201
ASN
493
A
PRO
494
n
202
PRO
494
A
THR
495
n
203
THR
495
A
TYR
496
n
204
TYR
496
A
ASN
497
n
205
ASN
497
A
GLU
498
n
206
GLU
498
A
ALA
499
n
207
ALA
499
A
LEU
500
n
208
LEU
500
A
VAL
501
n
209
VAL
501
A
PHE
502
n
210
PHE
502
A
ASP
503
n
211
ASP
503
A
VAL
504
n
212
VAL
504
A
ALA
505
n
213
ALA
505
A
PRO
506
n
214
PRO
506
A
GLU
507
n
215
GLU
507
A
SER
508
n
216
SER
508
A
VAL
509
n
217
VAL
509
A
GLU
510
n
218
GLU
510
A
ASN
511
n
219
ASN
511
A
VAL
512
n
220
VAL
512
A
GLY
513
n
221
GLY
513
A
LEU
514
n
222
LEU
514
A
SER
515
n
223
SER
515
A
ILE
516
n
224
ILE
516
A
ALA
517
n
225
ALA
517
A
VAL
518
n
226
VAL
518
A
VAL
519
n
227
VAL
519
A
ASP
520
n
228
ASP
520
A
TYR
521
n
229
TYR
521
A
ASP
522
n
230
ASP
522
A
CYS
523
n
231
CYS
523
A
ILE
524
n
232
ILE
524
A
GLY
525
n
233
GLY
525
A
HIS
526
n
234
HIS
526
A
ASN
527
n
235
ASN
527
A
GLU
528
n
236
GLU
528
A
VAL
529
n
237
VAL
529
A
ILE
530
n
238
ILE
530
A
GLY
531
n
239
GLY
531
A
VAL
532
n
240
VAL
532
A
CYS
533
n
241
CYS
533
A
ARG
534
n
242
ARG
534
A
VAL
535
n
243
VAL
535
A
GLY
536
n
244
GLY
536
A
PRO
537
n
245
PRO
537
A
ALA
538
n
246
GLU
538
A
ALA
539
n
247
ALA
539
A
ALA
540
n
248
ALA
540
A
ASP
541
n
249
ASP
541
A
PRO
542
n
250
PRO
542
A
HIS
543
n
251
HIS
543
A
GLY
544
n
252
GLY
544
A
ARG
545
n
253
ARG
545
A
GLU
546
n
254
GLU
546
A
HIS
547
n
255
HIS
547
A
TRP
548
n
256
TRP
548
A
ALA
549
n
257
ALA
549
A
GLU
550
n
258
GLU
550
A
MET
551
n
259
MET
551
A
LEU
552
n
260
LEU
552
A
ALA
553
n
261
ALA
553
A
ASN
554
n
262
ASN
554
A
PRO
555
n
263
PRO
555
A
ARG
556
n
264
ARG
556
A
LYS
557
n
265
LYS
557
A
PRO
558
n
266
PRO
558
A
VAL
559
n
267
VAL
559
A
GLU
560
n
268
GLU
560
A
HIS
561
n
269
HIS
561
A
TRP
562
n
270
TRP
562
A
HIS
563
n
271
HIS
563
A
GLN
564
n
272
GLN
564
A
LEU
565
n
273
LEU
565
A
VAL
566
n
274
VAL
566
A
GLU
567
n
275
GLU
567
A
GLU
568
n
276
GLU
568
A
LYS
569
n
277
LYS
569
A
n
278
570
A
n
279
571
A
n
280
572
A
n
281
573
A
n
282
574
A
n
283
575
A
n
284
576
A
n
285
577
A
n
286
578
A
n
287
579
A
n
288
580
A
n
289
581
A
n
290
582
A
n
291
583
A
n
292
584
A
n
293
585
A
n
294
586
A
n
295
587
A
n
296
588
A
author_and_software_defined_assembly
PISA
1
monomeric
software_defined_assembly
PISA
4
tetrameric
9750
-160
53210
A
ASP
328
A
OD2
ASP
36
1_555
A
MG
590
B
MG
MG
1_555
A
MG
591
C
MG
MG
1_555
60.0
A
ASP
460
A
OD2
ASP
168
1_555
A
MG
593
E
MG
MG
1_555
A
ASP
460
A
OD1
ASP
168
1_555
45.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
4_765
-x+2,-y+1,z
crystal symmetry operation
188.9385000000
109.0836938353
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
9_765
-x+2,-x+y+1,-z+1/3
crystal symmetry operation
188.9385000000
109.0836938353
39.4793333333
0.5000000000
0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
12_555
x,x-y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
39.4793333333
A
O
PHE
368
A
O
PHE
76
A
N
LEU
314
A
N
LEU
22
A
N
LEU
322
A
N
LEU
30
A
O
ARG
300
A
O
ARG
8
A
N
ILE
301
A
N
ILE
9
A
O
ARG
418
A
O
ARG
126
A
O
PHE
349
A
O
PHE
57
A
N
ILE
339
A
N
ILE
47
A
O
TYR
340
A
O
TYR
48
A
N
HIS
381
A
N
HIS
89
A
O
VAL
384
A
O
VAL
92
A
N
ILE
396
A
N
ILE
104
A
O
LEU
440
A
O
LEU
148
A
N
LEU
445
A
N
LEU
153
A
O
ILE
451
A
O
ILE
159
A
N
TYR
496
A
N
TYR
204
A
O
ARG
483
A
O
ARG
191
A
N
ALA
471
A
N
ALA
179
A
N
LYS
470
A
N
LYS
178
A
O
ALA
517
A
O
ALA
225
A
N
ASP
520
A
N
ASP
228
A
O
GLU
528
A
O
GLU
236
1
A
CG
GLU
538
A
CG
GLU
246
1
Y
1
A
CD
GLU
538
A
CD
GLU
246
1
Y
1
A
OE1
GLU
538
A
OE1
GLU
246
1
Y
1
A
OE2
GLU
538
A
OE2
GLU
246
1
Y
1
A
GLU
293
A
GLU
1
1
Y
1
A
ALA
294
A
ALA
2
1
Y
1
A
THR
570
A
THR
278
1
Y
1
A
LEU
571
A
LEU
279
1
Y
1
A
SER
572
A
SER
280
1
Y
1
A
SER
573
A
SER
281
1
Y
1
A
PHE
574
A
PHE
282
1
Y
1
A
THR
575
A
THR
283
1
Y
1
A
LYS
576
A
LYS
284
1
Y
1
A
GLY
577
A
GLY
285
1
Y
1
A
GLY
578
A
GLY
286
1
Y
1
A
LYS
579
A
LYS
287
1
Y
1
A
GLY
580
A
GLY
288
1
Y
1
A
LEU
581
A
LEU
289
1
Y
1
A
SER
582
A
SER
290
1
Y
1
A
GLU
583
A
GLU
291
1
Y
1
A
LYS
584
A
LYS
292
1
Y
1
A
GLU
585
A
GLU
293
1
Y
1
A
ASN
586
A
ASN
294
1
Y
1
A
SER
587
A
SER
295
1
Y
1
A
GLU
588
A
GLU
296
1
Y
1
A
A
O
N
LEU
ASN
552
554
2.17
1
9.54
1.50
119.30
128.84
A
A
A
C
N
CA
ASN
PRO
PRO
554
555
555
Y
1
A
A
CD1
CD1
ILE
ILE
487
487
1.83
1_555
9_765
1
A
ALA
296
-142.06
-54.35
1
A
LEU
319
-94.41
-74.15
1
A
ASN
330
-57.45
-0.63
1
A
PHE
332
-105.00
-150.26
1
A
LEU
342
-5.41
-63.99
1
A
PRO
343
-36.18
-70.96
1
A
LYS
346
-165.12
38.94
1
A
LYS
347
-143.45
28.49
1
A
LYS
356
42.57
82.91
1
A
THR
357
-179.42
132.08
1
A
PHE
362
-70.52
-71.06
1
A
LEU
372
-30.10
-70.03
1
A
ALA
376
-58.65
-79.84
1
A
ARG
378
-174.10
123.61
1
A
PHE
390
-130.66
-45.98
1
A
ASP
402
-44.52
-82.66
1
A
ASN
403
-65.89
67.39
1
A
GLU
409
-15.42
-90.14
1
A
GLN
410
158.31
156.82
1
A
PRO
411
-130.36
-155.48
1
A
ARG
414
-145.03
32.22
1
A
PRO
415
-23.97
118.85
1
A
TRP
417
-32.44
147.87
1
A
GLU
422
72.37
100.83
1
A
SER
425
-130.43
-152.77
1
A
GLU
426
-60.36
-172.25
1
A
LYS
427
171.48
-82.20
1
A
ALA
428
-65.85
-174.51
1
A
LEU
430
-161.63
-5.22
1
A
GLU
432
-168.18
119.53
1
A
CYS
438
-169.03
99.31
1
A
THR
442
-46.73
-92.20
1
A
ILE
451
-86.03
-70.80
1
A
ASP
460
-149.74
-9.60
1
A
LEU
461
80.65
-23.94
1
A
ASP
466
-111.18
70.22
1
A
TYR
468
177.94
157.38
1
A
LEU
473
-112.33
-162.40
1
A
SER
475
44.09
-93.13
1
A
ARG
478
50.90
17.58
1
A
SER
486
-75.81
-167.36
1
A
ASN
490
15.45
81.88
1
A
PRO
506
-52.75
-98.54
1
A
GLU
507
-33.76
-37.06
1
A
LEU
514
179.12
84.41
1
A
ILE
524
-54.85
-79.91
1
A
ARG
534
-155.79
-39.73
1
A
PRO
537
-56.73
50.15
1
A
ALA
539
-50.17
-7.22
1
A
HIS
543
-35.08
-36.56
1
A
MET
551
-84.59
40.78
1
A
LEU
552
-166.79
-140.87
1
A
ALA
553
56.12
-74.70
1
A
PRO
555
-39.81
49.85
1
A
ARG
556
158.02
-173.64
1
A
LYS
557
33.84
-85.49
1
A
VAL
559
157.13
7.38
1
A
HIS
561
92.81
75.27
1
A
TRP
562
-39.90
160.39
1
A
VAL
566
-65.13
30.02
used maximum likelihood/experiment
phase set target function
0.3485000
0.2930000
0.2930000
0.2930000
3.2
50.0
1564
16371
16371
94.3
random
1
0
0
Engh & Huber
3.2
50.0
0
2195
9
0
2186
1.622
0.0084
-1
3.2
50.0
1DQV
61080
9578
3
3
0.0500000
1
2.9
6.3
99.6
0.7850000
3.2
3.31
929
7
99.9
refinement
CNS
data reduction
DENZO
data scaling
SCALEPACK
phasing
CNS
CRYSTAL STRUCTURE OF SYNAPTOTAGMIN III C2A/C2B
1
N
N
2
N
N
2
N
N
2
N
N
2
N
N
3
N
N
The biological assembly is one
C2A domain and one C2B domain
A
PRO
371
A
PRO
79
HELX_P
A
ALA
376
A
ALA
84
5
1
6
A
LEU
405
A
LEU
113
HELX_P
A
GLU
409
A
GLU
117
5
2
5
A
PRO
506
A
PRO
214
HELX_P
A
ASN
511
A
ASN
219
5
3
6
A
ASP
541
A
ASP
249
HELX_P
A
GLU
550
A
GLU
258
1
4
10
metalc
2.775
A
ASP
328
A
OD2
ASP
36
1_555
A
MG
590
B
MG
MG
1_555
metalc
2.847
A
ASP
328
A
OD2
ASP
36
1_555
A
MG
591
C
MG
MG
1_555
metalc
2.809
A
ASP
460
A
OD2
ASP
168
1_555
A
MG
593
E
MG
MG
1_555
metalc
2.915
A
ASP
460
A
OD1
ASP
168
1_555
A
MG
593
E
MG
MG
1_555
metalc
2.913
A
MG
590
B
MG
MG
1_555
A
MG
591
C
MG
MG
1_555
ENDOCYTOSIS/EXOCYTOSIS
beta sandwich, calcium ion, C2 domain, ENDOCYTOSIS-EXOCYTOSIS COMPLEX
A
GLN
410
A
GLN
118
1
A
PRO
411
A
PRO
119
-0.07
SYT3_RAT
UNP
1
P40748
293
588
1DQV
293
588
P40748
A
1
1
296
4
4
3
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ILE
361
A
ILE
69
A
SER
369
A
SER
77
A
GLN
313
A
GLN
21
A
LEU
322
A
LEU
30
A
ARG
300
A
ARG
8
A
ARG
306
A
ARG
14
A
ARG
418
A
ARG
126
A
ASP
419
A
ASP
127
A
PHE
349
A
PHE
57
A
GLN
350
A
GLN
58
A
PRO
335
A
PRO
43
A
TYR
340
A
TYR
48
A
HIS
381
A
HIS
89
A
ASP
386
A
ASP
94
A
LEU
395
A
LEU
103
A
VAL
400
A
VAL
108
A
GLU
432
A
GLU
140
A
LEU
440
A
LEU
148
A
LEU
445
A
LEU
153
A
SER
454
A
SER
162
A
THR
495
A
THR
203
A
GLU
498
A
GLU
206
A
ARG
483
A
ARG
191
A
LYS
484
A
LYS
192
A
PRO
467
A
PRO
175
A
ALA
471
A
ALA
179
A
ALA
517
A
ALA
225
A
ASP
520
A
ASP
228
A
GLU
528
A
GLU
236
A
VAL
532
A
VAL
240
BINDING SITE FOR RESIDUE MG A 590
A
MG
590
Software
4
BINDING SITE FOR RESIDUE MG A 591
A
MG
591
Software
4
BINDING SITE FOR RESIDUE MG A 592
A
MG
592
Software
2
BINDING SITE FOR RESIDUE MG A 593
A
MG
593
Software
2
BINDING SITE FOR RESIDUE SO4 A 594
A
SO4
594
Software
2
A
ASP
328
A
ASP
36
4
1_555
A
ASP
386
A
ASP
94
4
1_555
A
ASP
388
A
ASP
96
4
1_555
A
MG
591
C
MG
4
1_555
A
ASP
328
A
ASP
36
4
1_555
A
ASP
334
A
ASP
42
4
1_555
A
PHE
387
A
PHE
95
4
1_555
A
MG
590
B
MG
4
1_555
A
ASP
388
A
ASP
96
2
1_555
A
SER
391
A
SER
99
2
1_555
A
ASP
460
A
ASP
168
2
1_555
A
ASP
466
A
ASP
174
2
1_555
A
SER
329
A
SER
37
2
12_555
A
LYS
356
A
LYS
64
2
1_555
180
P 62 2 2