0.36 7.748 -3.242 13.873 A O5' DG 1 ATOM A O5' DG 1 1 1.00 1 O 0.34 8.499 -4.363 14.345 A C5' DG 1 ATOM A C5' DG 1 1 1.00 1 C 0.32 8.117 -5.646 13.613 A C4' DG 1 ATOM A C4' DG 1 1 1.00 1 C 0.32 6.703 -5.921 13.752 A O4' DG 1 ATOM A O4' DG 1 1 1.00 1 O 0.29 8.437 -5.527 12.132 A C3' DG 1 ATOM A C3' DG 1 1 1.00 1 C 0.32 9.255 -6.630 11.716 A O3' DG 1 ATOM A O3' DG 1 1 1.00 1 O 0.30 7.082 -5.554 11.424 A C2' DG 1 ATOM A C2' DG 1 1 1.00 1 C 0.30 6.093 -6.080 12.452 A C1' DG 1 ATOM A C1' DG 1 1 1.00 1 C 0.29 4.818 -5.345 12.389 A N9 DG 1 ATOM A N9 DG 1 1 1.00 1 N 0.29 4.587 -4.012 12.445 A C8 DG 1 ATOM A C8 DG 1 1 1.00 1 C 0.28 3.359 -3.616 12.454 A N7 DG 1 ATOM A N7 DG 1 1 1.00 1 N 0.26 2.670 -4.832 12.392 A C5 DG 1 ATOM A C5 DG 1 1 1.00 1 C 0.24 1.273 -5.087 12.371 A C6 DG 1 ATOM A C6 DG 1 1 1.00 1 C 0.23 0.350 -4.279 12.418 A O6 DG 1 ATOM A O6 DG 1 1 1.00 1 O 0.25 1.005 -6.446 12.300 A N1 DG 1 ATOM A N1 DG 1 1 1.00 1 N 0.28 1.957 -7.442 12.257 A C2 DG 1 ATOM A C2 DG 1 1 1.00 1 C 0.31 1.504 -8.688 12.181 A N2 DG 1 ATOM A N2 DG 1 1 1.00 1 N 0.28 3.270 -7.214 12.280 A N3 DG 1 ATOM A N3 DG 1 1 1.00 1 N 0.27 3.557 -5.894 12.347 A C4 DG 1 ATOM A C4 DG 1 1 1.00 1 C 0.33 9.676 -6.817 10.173 A P DG 2 ATOM A P DG 1 2 1.00 1 P 0.40 10.798 -7.781 10.112 A OP1 DG 2 ATOM A OP1 DG 1 2 1.00 1 O 0.33 9.822 -5.476 9.563 A OP2 DG 2 ATOM A OP2 DG 1 2 1.00 1 O 0.28 8.371 -7.520 9.542 A O5' DG 2 ATOM A O5' DG 1 2 1.00 1 O 0.30 8.135 -8.922 9.724 A C5' DG 2 ATOM A C5' DG 1 2 1.00 1 C 0.28 6.981 -9.416 8.856 A C4' DG 2 ATOM A C4' DG 1 2 1.00 1 C 0.26 5.733 -8.776 9.231 A O4' DG 2 ATOM A O4' DG 1 2 1.00 1 O 0.28 7.245 -9.097 7.399 A C3' DG 2 ATOM A C3' DG 1 2 1.00 1 C 0.28 6.886 -10.227 6.569 A O3' DG 2 ATOM A O3' DG 1 2 1.00 1 O 0.26 6.375 -7.895 7.132 A C2' DG 2 ATOM A C2' DG 1 2 1.00 1 C 0.24 5.209 -8.063 8.093 A C1' DG 2 ATOM A C1' DG 1 2 1.00 1 C 0.22 4.589 -6.778 8.491 A N9 DG 2 ATOM A N9 DG 1 2 1.00 1 N 0.23 5.151 -5.599 8.860 A C8 DG 2 ATOM A C8 DG 1 2 1.00 1 C 0.22 4.353 -4.620 9.145 A N7 DG 2 ATOM A N7 DG 1 2 1.00 1 N 0.19 3.097 -5.207 8.949 A C5 DG 2 ATOM A C5 DG 1 2 1.00 1 C 0.18 1.790 -4.656 9.098 A C6 DG 2 ATOM A C6 DG 1 2 1.00 1 C 0.18 1.468 -3.515 9.429 A O6 DG 2 ATOM A O6 DG 1 2 1.00 1 O 0.17 0.808 -5.592 8.802 A N1 DG 2 ATOM A N1 DG 1 2 1.00 1 N 0.19 1.043 -6.892 8.412 A C2 DG 2 ATOM A C2 DG 1 2 1.00 1 C 0.21 -0.028 -7.640 8.174 A N2 DG 2 ATOM A N2 DG 1 2 1.00 1 N 0.21 2.260 -7.416 8.269 A N3 DG 2 ATOM A N3 DG 1 2 1.00 1 N 0.20 3.237 -6.527 8.551 A C4 DG 2 ATOM A C4 DG 1 2 1.00 1 C 0.28 6.090 -10.066 5.165 A P DA 3 ATOM A P DA 1 3 1.00 1 P 0.31 6.038 -11.394 4.513 A OP1 DA 3 ATOM A OP1 DA 1 3 1.00 1 O 0.31 6.664 -8.913 4.434 A OP2 DA 3 ATOM A OP2 DA 1 3 1.00 1 O 0.25 4.591 -9.673 5.631 A O5' DA 3 ATOM A O5' DA 1 3 1.00 1 O 0.24 3.575 -10.681 5.764 A C5' DA 3 ATOM A C5' DA 1 3 1.00 1 C 0.21 2.294 -10.326 5.002 A C4' DA 3 ATOM A C4' DA 1 3 1.00 1 C 0.18 1.541 -9.278 5.660 A O4' DA 3 ATOM A O4' DA 1 3 1.00 1 O 0.21 2.607 -9.871 3.597 A C3' DA 3 ATOM A C3' DA 1 3 1.00 1 C 0.22 2.190 -10.859 2.638 A O3' DA 3 ATOM A O3' DA 1 3 1.00 1 O 0.18 1.853 -8.569 3.416 A C2' DA 3 ATOM A C2' DA 1 3 1.00 1 C 0.16 1.041 -8.351 4.674 A C1' DA 3 ATOM A C1' DA 1 3 1.00 1 C 0.15 1.158 -6.958 5.137 A N9 DA 3 ATOM A N9 DA 1 3 1.00 1 N 0.17 2.260 -6.266 5.483 A C8 DA 3 ATOM A C8 DA 1 3 1.00 1 C 0.17 2.107 -5.048 5.878 A N7 DA 3 ATOM A N7 DA 1 3 1.00 1 N 0.14 0.721 -4.898 5.783 A C5 DA 3 ATOM A C5 DA 1 3 1.00 1 C 0.13 -0.137 -3.829 6.053 A C6 DA 3 ATOM A C6 DA 1 3 1.00 1 C 0.15 0.288 -2.651 6.512 A N6 DA 3 ATOM A N6 DA 1 3 1.00 1 N 0.11 -1.451 -4.024 5.846 A N1 DA 3 ATOM A N1 DA 1 3 1.00 1 N 0.11 -1.899 -5.204 5.400 A C2 DA 3 ATOM A C2 DA 1 3 1.00 1 C 0.12 -1.175 -6.280 5.115 A N3 DA 3 ATOM A N3 DA 1 3 1.00 1 N 0.13 0.136 -6.059 5.330 A C4 DA 3 ATOM A C4 DA 1 3 1.00 1 C 0.24 2.001 -10.489 1.077 A P DG 4 ATOM A P DG 1 4 1.00 1 P 0.28 1.694 -11.733 0.338 A OP1 DG 4 ATOM A OP1 DG 1 4 1.00 1 O 0.25 3.140 -9.642 0.656 A OP2 DG 4 ATOM A OP2 DG 1 4 1.00 1 O 0.20 0.672 -9.575 1.100 A O5' DG 4 ATOM A O5' DG 1 4 1.00 1 O 0.19 -0.539 -10.061 1.696 A C5' DG 4 ATOM A C5' DG 1 4 1.00 1 C 0.17 -1.732 -9.162 1.372 A C4' DG 4 ATOM A C4' DG 1 4 1.00 1 C 0.15 -1.641 -7.892 2.063 A O4' DG 4 ATOM A O4' DG 1 4 1.00 1 O 0.18 -1.803 -8.878 -0.121 A C3' DG 4 ATOM A C3' DG 1 4 1.00 1 C 0.19 -3.077 -9.290 -0.651 A O3' DG 4 ATOM A O3' DG 1 4 1.00 1 O 0.17 -1.608 -7.393 -0.234 A C2' DG 4 ATOM A C2' DG 1 4 1.00 1 C 0.15 -1.940 -6.839 1.132 A C1' DG 4 ATOM A C1' DG 1 4 1.00 1 C 0.14 -1.161 -5.625 1.422 A N9 DG 4 ATOM A N9 DG 1 4 1.00 1 N 0.15 0.177 -5.463 1.486 A C8 DG 4 ATOM A C8 DG 1 4 1.00 1 C 0.14 0.626 -4.298 1.818 A N7 DG 4 ATOM A N7 DG 1 4 1.00 1 N 0.12 -0.562 -3.578 1.994 A C5 DG 4 ATOM A C5 DG 1 4 1.00 1 C 0.11 -0.764 -2.220 2.364 A C6 DG 4 ATOM A C6 DG 1 4 1.00 1 C 0.11 0.078 -1.364 2.625 A O6 DG 4 ATOM A O6 DG 1 4 1.00 1 O 0.10 -2.114 -1.904 2.419 A N1 DG 4 ATOM A N1 DG 1 4 1.00 1 N 0.10 -3.146 -2.779 2.154 A C2 DG 4 ATOM A C2 DG 1 4 1.00 1 C 0.10 -4.376 -2.286 2.237 A N2 DG 4 ATOM A N2 DG 1 4 1.00 1 N 0.11 -2.968 -4.053 1.811 A N3 DG 4 ATOM A N3 DG 1 4 1.00 1 N 0.12 -1.660 -4.387 1.749 A C4 DG 4 ATOM A C4 DG 1 4 1.00 1 C 0.21 -3.615 -8.759 -2.079 A P DA 5 ATOM A P DA 1 5 1.00 1 P 0.23 -4.748 -9.616 -2.495 A OP1 DA 5 ATOM A OP1 DA 1 5 1.00 1 O 0.24 -2.454 -8.584 -2.981 A OP2 DA 5 ATOM A OP2 DA 1 5 1.00 1 O 0.20 -4.196 -7.295 -1.718 A O5' DA 5 ATOM A O5' DA 1 5 1.00 1 O 0.18 -5.531 -7.134 -1.213 A C5' DA 5 ATOM A C5' DA 1 5 1.00 1 C 0.16 -6.066 -5.721 -1.453 A C4' DA 5 ATOM A C4' DA 1 5 1.00 1 C 0.16 -5.276 -4.735 -0.747 A O4' DA 5 ATOM A O4' DA 1 5 1.00 1 O 0.17 -6.036 -5.384 -2.932 A C3' DA 5 ATOM A C3' DA 1 5 1.00 1 C 0.17 -7.363 -5.185 -3.444 A O3' DA 5 ATOM A O3' DA 1 5 1.00 1 O 0.17 -5.237 -4.097 -3.032 A C2' DA 5 ATOM A C2' DA 1 5 1.00 1 C 0.16 -5.016 -3.615 -1.613 A C1' DA 5 ATOM A C1' DA 1 5 1.00 1 C 0.17 -3.648 -3.089 -1.418 A N9 DA 5 ATOM A N9 DA 1 5 1.00 1 N 0.17 -2.458 -3.726 -1.496 A C8 DA 5 ATOM A C8 DA 1 5 1.00 1 C 0.16 -1.396 -3.054 -1.207 A N7 DA 5 ATOM A N7 DA 1 5 1.00 1 N 0.16 -1.933 -1.802 -0.902 A C5 DA 5 ATOM A C5 DA 1 5 1.00 1 C 0.16 -1.349 -0.595 -0.507 A C6 DA 5 ATOM A C6 DA 1 5 1.00 1 C 0.16 -0.035 -0.446 -0.336 A N6 DA 5 ATOM A N6 DA 1 5 1.00 1 N 0.16 -2.168 0.449 -0.290 A N1 DA 5 ATOM A N1 DA 1 5 1.00 1 N 0.17 -3.490 0.315 -0.453 A C2 DA 5 ATOM A C2 DA 1 5 1.00 1 C 0.16 -4.146 -0.782 -0.820 A N3 DA 5 ATOM A N3 DA 1 5 1.00 1 N 0.16 -3.303 -1.812 -1.030 A C4 DA 5 ATOM A C4 DA 1 5 1.00 1 C 0.19 -7.600 -4.617 -4.940 A P U 6 ATOM A P U 1 6 1.00 1 P 0.19 -9.056 -4.611 -5.206 A OP1 U 6 ATOM A OP1 U 1 6 1.00 1 O 0.21 -6.687 -5.334 -5.859 A OP2 U 6 ATOM A OP2 U 1 6 1.00 1 O 0.19 -7.099 -3.082 -4.826 A O5' U 6 ATOM A O5' U 1 6 1.00 1 O 0.18 -7.810 -2.146 -4.005 A C5' U 6 ATOM A C5' U 1 6 1.00 1 C 0.18 -7.209 -0.736 -4.051 A C4' U 6 ATOM A C4' U 1 6 1.00 1 C 0.19 -5.930 -0.672 -3.393 A O4' U 6 ATOM A O4' U 1 6 1.00 1 O 0.20 -7.001 -0.249 -5.481 A C3' U 6 ATOM A C3' U 1 6 1.00 1 C 0.20 -8.011 0.712 -5.838 A O3' U 6 ATOM A O3' U 1 6 1.00 1 O 0.22 -5.605 0.339 -5.507 A C2' U 6 ATOM A C2' U 1 6 1.00 1 C 0.25 -5.576 1.681 -5.998 A O2' U 6 ATOM A O2' U 1 6 1.00 1 O 0.20 -5.126 0.300 -4.081 A C1' U 6 ATOM A C1' U 1 6 1.00 1 C 0.20 -3.688 -0.013 -3.994 A N1 U 6 ATOM A N1 U 1 6 1.00 1 N 0.20 -2.838 0.988 -3.562 A C2 U 6 ATOM A C2 U 1 6 1.00 1 C 0.20 -3.234 2.119 -3.289 A O2 U 6 ATOM A O2 U 1 6 1.00 1 O 0.20 -1.508 0.647 -3.455 A N3 U 6 ATOM A N3 U 1 6 1.00 1 N 0.21 -0.957 -0.589 -3.732 A C4 U 6 ATOM A C4 U 1 6 1.00 1 C 0.21 0.249 -0.776 -3.598 A O4 U 6 ATOM A O4 U 1 6 1.00 1 O 0.21 -1.916 -1.577 -4.175 A C5 U 6 ATOM A C5 U 1 6 1.00 1 C 0.20 -3.231 -1.255 -4.297 A C6 U 6 ATOM A C6 U 1 6 1.00 1 C 0.21 -8.139 1.294 -7.337 A P G 7 ATOM A P G 1 7 1.00 1 P 0.27 -9.556 1.640 -7.585 A OP1 G 7 ATOM A OP1 G 1 7 1.00 1 O 0.23 -7.429 0.377 -8.257 A OP2 G 7 ATOM A OP2 G 1 7 1.00 1 O 0.16 -7.288 2.664 -7.239 A O5' G 7 ATOM A O5' G 1 7 1.00 1 O 0.20 -7.676 3.695 -6.318 A C5' G 7 ATOM A C5' G 1 7 1.00 1 C 0.18 -6.566 4.727 -6.075 A C4' G 7 ATOM A C4' G 1 7 1.00 1 C 0.19 -5.474 4.188 -5.299 A O4' G 7 ATOM A O4' G 1 7 1.00 1 O 0.13 -5.962 5.225 -7.376 A C3' G 7 ATOM A C3' G 1 7 1.00 1 C 0.15 -6.598 6.427 -7.839 A O3' G 7 ATOM A O3' G 1 7 1.00 1 O 0.13 -4.510 5.466 -7.056 A C2' G 7 ATOM A C2' G 1 7 1.00 1 C 0.15 -4.209 6.852 -7.004 A O2' G 7 ATOM A O2' G 1 7 1.00 1 O 0.16 -4.252 4.836 -5.722 A C1' G 7 ATOM A C1' G 1 7 1.00 1 C 0.14 -3.112 3.908 -5.821 A N9 G 7 ATOM A N9 G 1 7 1.00 1 N 0.14 -3.083 2.590 -6.108 A C8 G 7 ATOM A C8 G 1 7 1.00 1 C 0.15 -1.928 2.005 -6.130 A N7 G 7 ATOM A N7 G 1 7 1.00 1 N 0.12 -1.069 3.067 -5.821 A C5 G 7 ATOM A C5 G 1 7 1.00 1 C 0.13 0.348 3.097 -5.686 A C6 G 7 ATOM A C6 G 1 7 1.00 1 C 0.18 1.156 2.172 -5.794 A O6 G 7 ATOM A O6 G 1 7 1.00 1 O 0.10 0.796 4.372 -5.372 A N1 G 7 ATOM A N1 G 1 7 1.00 1 N 0.11 -0.006 5.482 -5.207 A C2 G 7 ATOM A C2 G 1 7 1.00 1 C 0.14 0.608 6.620 -4.912 A N2 G 7 ATOM A N2 G 1 7 1.00 1 N 0.13 -1.328 5.462 -5.329 A N3 G 7 ATOM A N3 G 1 7 1.00 1 N 0.12 -1.793 4.233 -5.634 A C4 G 7 ATOM A C4 G 1 7 1.00 1 C 0.16 -6.360 6.951 -9.350 A P A 8 ATOM A P A 1 8 1.00 1 P 0.19 -7.549 7.733 -9.759 A OP1 A 8 ATOM A OP1 A 1 8 1.00 1 O 0.16 -5.920 5.803 -10.174 A OP2 A 8 ATOM A OP2 A 1 8 1.00 1 O 0.22 -5.112 7.968 -9.203 A O5' A 8 ATOM A O5' A 1 8 1.00 1 O 0.33 -5.318 9.337 -8.831 A C5' A 8 ATOM A C5' A 1 8 1.00 1 C 0.37 -3.998 10.091 -8.645 A C4' A 8 ATOM A C4' A 1 8 1.00 1 C 0.32 -3.144 9.425 -7.683 A O4' A 8 ATOM A O4' A 1 8 1.00 1 O 0.38 -3.211 10.179 -9.945 A C3' A 8 ATOM A C3' A 1 8 1.00 1 C 0.50 -3.444 11.411 -10.643 A O3' A 8 ATOM A O3' A 1 8 1.00 1 O 0.36 -1.777 10.049 -9.516 A C2' A 8 ATOM A C2' A 1 8 1.00 1 C 0.46 -1.177 11.326 -9.288 A O2' A 8 ATOM A O2' A 1 8 1.00 1 O 0.30 -1.820 9.254 -8.250 A C1' A 8 ATOM A C1' A 1 8 1.00 1 C 0.21 -1.533 7.833 -8.535 A N9 A 8 ATOM A N9 A 1 8 1.00 1 N 0.16 -2.386 6.816 -8.799 A C8 A 8 ATOM A C8 A 1 8 1.00 1 C 0.14 -1.885 5.637 -8.949 A N7 A 8 ATOM A N7 A 1 8 1.00 1 N 0.15 -0.522 5.888 -8.773 A C5 A 8 ATOM A C5 A 1 8 1.00 1 C 0.19 0.603 5.059 -8.804 A C6 A 8 ATOM A C6 A 1 8 1.00 1 C 0.25 0.527 3.742 -8.999 A N6 A 8 ATOM A N6 A 1 8 1.00 1 N 0.20 1.804 5.633 -8.599 A N1 A 8 ATOM A N1 A 1 8 1.00 1 N 0.19 1.893 6.949 -8.373 A C2 A 8 ATOM A C2 A 1 8 1.00 1 C 0.20 0.891 7.822 -8.316 A N3 A 8 ATOM A N3 A 1 8 1.00 1 N 0.18 -0.298 7.222 -8.526 A C4 A 8 ATOM A C4 A 1 8 1.00 1 C 0.57 -3.150 11.514 -12.228 A P C 9 ATOM A P C 1 9 1.00 1 P 0.68 -3.396 12.909 -12.657 A OP1 C 9 ATOM A OP1 C 1 9 1.00 1 O 0.54 -3.855 10.400 -12.903 A OP2 C 9 ATOM A OP2 C 1 9 1.00 1 O 0.58 -1.564 11.229 -12.319 A O5' C 9 ATOM A O5' C 1 9 1.00 1 O 0.61 -0.627 12.164 -11.774 A C5' C 9 ATOM A C5' C 1 9 1.00 1 C 0.59 0.809 11.642 -11.830 A C4' C 9 ATOM A C4' C 1 9 1.00 1 C 0.52 0.963 10.413 -11.089 A O4' C 9 ATOM A O4' C 1 9 1.00 1 O 0.66 1.237 11.350 -13.256 A C3' C 9 ATOM A C3' C 1 9 1.00 1 C 0.75 1.881 12.482 -13.858 A O3' C 9 ATOM A O3' C 1 9 1.00 1 O 0.64 2.173 10.179 -13.138 A C2' C 9 ATOM A C2' C 1 9 1.00 1 C 0.69 3.536 10.618 -13.075 A O2' C 9 ATOM A O2' C 1 9 1.00 1 O 0.53 1.770 9.485 -11.857 A C1' C 9 ATOM A C1' C 1 9 1.00 1 C 0.51 1.020 8.248 -12.150 A N1 C 9 ATOM A N1 C 1 9 1.00 1 N 0.50 1.721 7.054 -12.131 A C2 C 9 ATOM A C2 C 1 9 1.00 1 C 0.50 2.938 7.053 -11.961 A O2 C 9 ATOM A O2 C 1 9 1.00 1 O 0.50 1.034 5.898 -12.323 A N3 C 9 ATOM A N3 C 1 9 1.00 1 N 0.50 -0.288 5.910 -12.525 A C4 C 9 ATOM A C4 C 1 9 1.00 1 C 0.51 -0.924 4.753 -12.705 A N4 C 9 ATOM A N4 C 1 9 1.00 1 N 0.51 -1.018 7.142 -12.550 A C5 C 9 ATOM A C5 C 1 9 1.00 1 C 0.51 -0.323 8.282 -12.369 A C6 C 9 ATOM A C6 C 1 9 1.00 1 C 0.77 7.455 -2.937 -12.308 B O5' DG 10 ATOM B O5' DG 2 1 1.00 1 O 0.79 8.596 -2.427 -13.003 B C5' DG 10 ATOM B C5' DG 2 1 1.00 1 C 0.75 8.765 -0.927 -12.783 B C4' DG 10 ATOM B C4' DG 2 1 1.00 1 C 0.70 7.682 -0.180 -13.378 B O4' DG 10 ATOM B O4' DG 2 1 1.00 1 O 0.74 8.796 -0.599 -11.298 B C3' DG 10 ATOM B C3' DG 2 1 1.00 1 C 0.78 10.121 -0.221 -10.898 B O3' DG 10 ATOM B O3' DG 2 1 1.00 1 O 0.69 7.818 0.552 -11.119 B C2' DG 10 ATOM B C2' DG 2 1 1.00 1 C 0.66 7.318 0.908 -12.509 B C1' DG 10 ATOM B C1' DG 2 1 1.00 1 C 0.61 5.860 1.126 -12.513 B N9 DG 10 ATOM B N9 DG 2 1 1.00 1 N 0.62 4.859 0.234 -12.677 B C8 DG 10 ATOM B C8 DG 2 1 1.00 1 C 0.58 3.649 0.685 -12.706 B N7 DG 10 ATOM B N7 DG 2 1 1.00 1 N 0.53 3.857 2.059 -12.538 B C5 DG 10 ATOM B C5 DG 2 1 1.00 1 C 0.49 2.918 3.127 -12.482 B C6 DG 10 ATOM B C6 DG 2 1 1.00 1 C 0.49 1.693 3.079 -12.583 B O6 DG 10 ATOM B O6 DG 2 1 1.00 1 O 0.47 3.550 4.346 -12.301 B N1 DG 10 ATOM B N1 DG 2 1 1.00 1 N 0.48 4.910 4.530 -12.186 B C2 DG 10 ATOM B C2 DG 2 1 1.00 1 C 0.47 5.321 5.780 -12.010 B N2 DG 10 ATOM B N2 DG 2 1 1.00 1 N 0.52 5.800 3.538 -12.239 B N3 DG 10 ATOM B N3 DG 2 1 1.00 1 N 0.55 5.210 2.335 -12.416 B C4 DG 10 ATOM B C4 DG 2 1 1.00 1 C 0.79 10.432 0.261 -9.392 B P DT 11 ATOM B P DT 2 2 1.00 1 P 0.89 11.883 0.531 -9.286 B OP1 DT 11 ATOM B OP1 DT 2 2 1.00 1 O 0.84 9.789 -0.689 -8.457 B OP2 DT 11 ATOM B OP2 DT 2 2 1.00 1 O 0.64 9.649 1.665 -9.307 B O5' DT 11 ATOM B O5' DT 2 2 1.00 1 O 0.58 10.209 2.855 -9.876 B C5' DT 11 ATOM B C5' DT 2 2 1.00 1 C 0.46 9.589 4.107 -9.265 B C4' DT 11 ATOM B C4' DT 2 2 1.00 1 C 0.42 8.207 4.249 -9.661 B O4' DT 11 ATOM B O4' DT 2 2 1.00 1 O 0.40 9.639 4.034 -7.749 B C3' DT 11 ATOM B C3' DT 2 2 1.00 1 C 0.36 10.381 5.135 -7.202 B O3' DT 11 ATOM B O3' DT 2 2 1.00 1 O 0.35 8.207 4.077 -7.301 B C2' DT 11 ATOM B C2' DT 2 2 1.00 1 C 0.34 7.400 4.512 -8.499 B C1' DT 11 ATOM B C1' DT 2 2 1.00 1 C 0.35 6.123 3.783 -8.560 B N1 DT 11 ATOM B N1 DT 2 2 1.00 1 N 0.29 4.956 4.522 -8.550 B C2 DT 11 ATOM B C2 DT 2 2 1.00 1 C 0.23 4.949 5.743 -8.423 B O2 DT 11 ATOM B O2 DT 2 2 1.00 1 O 0.31 3.788 3.802 -8.670 B N3 DT 11 ATOM B N3 DT 2 2 1.00 1 N 0.41 3.683 2.431 -8.796 B C4 DT 11 ATOM B C4 DT 2 2 1.00 1 C 0.43 2.584 1.898 -8.915 B O4 DT 11 ATOM B O4 DT 2 2 1.00 1 O 0.47 4.953 1.741 -8.788 B C5 DT 11 ATOM B C5 DT 2 2 1.00 1 C 0.60 4.986 0.222 -8.937 B C7 DT 11 ATOM B C7 DT 2 2 1.00 1 C 0.44 6.109 2.422 -8.668 B C6 DT 11 ATOM B C6 DT 2 2 1.00 1 C 0.31 10.444 5.389 -5.608 B P DC 12 ATOM B P DC 2 3 1.00 1 P 0.31 11.537 6.348 -5.337 B OP1 DC 12 ATOM B OP1 DC 2 3 1.00 1 O 0.34 10.431 4.074 -4.927 B OP2 DC 12 ATOM B OP2 DC 2 3 1.00 1 O 0.29 9.038 6.123 -5.303 B O5' DC 12 ATOM B O5' DC 2 3 1.00 1 O 0.27 8.857 7.519 -5.588 B C5' DC 12 ATOM B C5' DC 2 3 1.00 1 C 0.22 7.510 8.032 -5.071 B C4' DC 12 ATOM B C4' DC 2 3 1.00 1 C 0.20 6.429 7.241 -5.602 B O4' DC 12 ATOM B O4' DC 2 3 1.00 1 O 0.21 7.455 7.978 -3.560 B C3' DC 12 ATOM B C3' DC 2 3 1.00 1 C 0.28 7.286 9.297 -3.014 B O3' DC 12 ATOM B O3' DC 2 3 1.00 1 O 0.19 6.262 7.106 -3.234 B C2' DC 12 ATOM B C2' DC 2 3 1.00 1 C 0.16 5.555 6.824 -4.543 B C1' DC 12 ATOM B C1' DC 2 3 1.00 1 C 0.18 5.233 5.395 -4.673 B N1 DC 12 ATOM B N1 DC 2 3 1.00 1 N 0.15 3.919 5.056 -4.914 B C2 DC 12 ATOM B C2 DC 2 3 1.00 1 C 0.13 3.051 5.917 -4.894 B O2 DC 12 ATOM B O2 DC 2 3 1.00 1 O 0.19 3.617 3.753 -5.149 B N3 DC 12 ATOM B N3 DC 2 3 1.00 1 N 0.27 4.572 2.820 -5.147 B C4 DC 12 ATOM B C4 DC 2 3 1.00 1 C 0.32 4.236 1.554 -5.394 B N4 DC 12 ATOM B N4 DC 2 3 1.00 1 N 0.30 5.939 3.170 -4.888 B C5 DC 12 ATOM B C5 DC 2 3 1.00 1 C 0.25 6.214 4.461 -4.647 B C6 DC 12 ATOM B C6 DC 2 3 1.00 1 C 0.61 6.851 9.514 -1.474 B P DA 13 ATOM B P DA 2 4 1.00 1 P 1.22 6.906 10.963 -1.177 B OP1 DA 13 ATOM B OP1 DA 2 4 1.00 1 O 1.27 7.615 8.562 -0.636 B OP2 DA 13 ATOM B OP2 DA 2 4 1.00 1 O 0.36 5.302 9.055 -1.475 B O5' DA 13 ATOM B O5' DA 2 4 1.00 1 O 0.33 4.276 9.941 -1.946 B C5' DA 13 ATOM B C5' DA 2 4 1.00 1 C 0.26 2.882 9.474 -1.530 B C4' DA 13 ATOM B C4' DA 2 4 1.00 1 C 0.25 2.500 8.257 -2.218 B O4' DA 13 ATOM B O4' DA 2 4 1.00 1 O 0.22 2.823 9.206 -0.035 B C3' DA 13 ATOM B C3' DA 2 4 1.00 1 C 0.24 1.796 10.014 0.578 B O3' DA 13 ATOM B O3' DA 2 4 1.00 1 O 0.28 2.505 7.731 0.069 B C2' DA 13 ATOM B C2' DA 2 4 1.00 1 C 0.26 1.890 7.375 -1.267 B C1' DA 13 ATOM B C1' DA 2 4 1.00 1 C 0.25 2.121 5.961 -1.602 B N9 DA 13 ATOM B N9 DA 2 4 1.00 1 N 0.25 3.276 5.258 -1.601 B C8 DA 13 ATOM B C8 DA 2 4 1.00 1 C 0.24 3.217 4.012 -1.925 B N7 DA 13 ATOM B N7 DA 2 4 1.00 1 N 0.23 1.851 3.852 -2.174 B C5 DA 13 ATOM B C5 DA 2 4 1.00 1 C 0.22 1.087 2.752 -2.568 B C6 DA 13 ATOM B C6 DA 2 4 1.00 1 C 0.22 1.617 1.553 -2.797 B N6 DA 13 ATOM B N6 DA 2 4 1.00 1 N 0.22 -0.239 2.937 -2.723 B N1 DA 13 ATOM B N1 DA 2 4 1.00 1 N 0.22 -0.782 4.141 -2.504 B C2 DA 13 ATOM B C2 DA 2 4 1.00 1 C 0.23 -0.149 5.249 -2.127 B N3 DA 13 ATOM B N3 DA 2 4 1.00 1 N 0.24 1.175 5.033 -1.980 B C4 DA 13 ATOM B C4 DA 2 4 1.00 1 C 0.30 1.143 9.639 2.013 B P DT 14 ATOM B P DT 2 5 1.00 1 P 0.31 0.600 10.880 2.609 B OP1 DT 14 ATOM B OP1 DT 2 5 1.00 1 O 0.37 2.122 8.827 2.772 B OP2 DT 14 ATOM B OP2 DT 2 5 1.00 1 O 0.29 -0.101 8.683 1.609 B O5' DT 14 ATOM B O5' DT 2 5 1.00 1 O 0.22 -1.250 9.209 0.919 B C5' DT 14 ATOM B C5' DT 2 5 1.00 1 C 0.22 -2.443 8.239 0.955 B C4' DT 14 ATOM B C4' DT 2 5 1.00 1 C 0.24 -2.143 7.026 0.245 B O4' DT 14 ATOM B O4' DT 2 5 1.00 1 O 0.21 -2.828 7.881 2.373 B C3' DT 14 ATOM B C3' DT 2 5 1.00 1 C 0.23 -4.124 8.405 2.702 B O3' DT 14 ATOM B O3' DT 2 5 1.00 1 O 0.19 -2.836 6.389 2.417 B C2' DT 14 ATOM B C2' DT 2 5 1.00 1 C 0.20 -2.588 5.898 1.012 B C1' DT 14 ATOM B C1' DT 2 5 1.00 1 C 0.18 -1.564 4.850 1.004 B N1 DT 14 ATOM B N1 DT 2 5 1.00 1 N 0.17 -1.909 3.586 0.576 B C2 DT 14 ATOM B C2 DT 2 5 1.00 1 C 0.18 -3.066 3.270 0.317 B O2 DT 14 ATOM B O2 DT 2 5 1.00 1 O 0.16 -0.873 2.680 0.492 B N3 DT 14 ATOM B N3 DT 2 5 1.00 1 N 0.17 0.454 2.927 0.795 B C4 DT 14 ATOM B C4 DT 2 5 1.00 1 C 0.18 1.298 2.045 0.663 B O4 DT 14 ATOM B O4 DT 2 5 1.00 1 O 0.18 0.710 4.280 1.244 B C5 DT 14 ATOM B C5 DT 2 5 1.00 1 C 0.20 2.133 4.719 1.590 B C7 DT 14 ATOM B C7 DT 2 5 1.00 1 C 0.18 -0.292 5.170 1.338 B C6 DT 14 ATOM B C6 DT 2 5 1.00 1 C 0.24 -4.776 8.147 4.155 B P DC 15 ATOM B P DC 2 6 1.00 1 P 0.28 -6.026 8.936 4.249 B OP1 DC 15 ATOM B OP1 DC 2 6 1.00 1 O 0.27 -3.716 8.325 5.174 B OP2 DC 15 ATOM B OP2 DC 2 6 1.00 1 O 0.17 -5.164 6.581 4.107 B O5' DC 15 ATOM B O5' DC 2 6 1.00 1 O 0.17 -6.410 6.135 3.552 B C5' DC 15 ATOM B C5' DC 2 6 1.00 1 C 0.14 -6.503 4.610 3.560 B C4' DC 15 ATOM B C4' DC 2 6 1.00 1 C 0.13 -5.366 4.018 2.920 B O4' DC 15 ATOM B O4' DC 2 6 1.00 1 O 0.13 -6.553 4.078 4.971 B C3' DC 15 ATOM B C3' DC 2 6 1.00 1 C 0.17 -7.912 3.836 5.364 B O3' DC 15 ATOM B O3' DC 2 6 1.00 1 O 0.12 -5.756 2.769 4.898 B C2' DC 15 ATOM B C2' DC 2 6 1.00 1 C 0.12 -5.142 2.732 3.511 B C1' DC 15 ATOM B C1' DC 2 6 1.00 1 C 0.11 -3.703 2.416 3.571 B N1 DC 15 ATOM B N1 DC 2 6 1.00 1 N 0.10 -3.303 1.135 3.223 B C2 DC 15 ATOM B C2 DC 2 6 1.00 1 C 0.10 -4.136 0.280 2.931 B O2 DC 15 ATOM B O2 DC 2 6 1.00 1 O 0.11 -1.970 0.856 3.223 B N3 DC 15 ATOM B N3 DC 2 6 1.00 1 N 0.11 -1.072 1.795 3.549 B C4 DC 15 ATOM B C4 DC 2 6 1.00 1 C 0.12 0.226 1.494 3.508 B N4 DC 15 ATOM B N4 DC 2 6 1.00 1 N 0.12 -1.490 3.116 3.914 B C5 DC 15 ATOM B C5 DC 2 6 1.00 1 C 0.12 -2.800 3.375 3.915 B C6 DC 15 ATOM B C6 DC 2 6 1.00 1 C 0.20 -8.262 3.120 6.765 B P DT 16 ATOM B P DT 2 7 1.00 1 P 0.32 -9.711 3.282 7.016 B OP1 DT 16 ATOM B OP1 DT 2 7 1.00 1 O 0.23 -7.283 3.572 7.780 B OP2 DT 16 ATOM B OP2 DT 2 7 1.00 1 O 0.18 -7.977 1.568 6.446 B O5' DT 16 ATOM B O5' DT 2 7 1.00 1 O 0.19 -8.765 0.869 5.475 B C5' DT 16 ATOM B C5' DT 2 7 1.00 1 C 0.18 -8.401 -0.611 5.415 B C4' DT 16 ATOM B C4' DT 2 7 1.00 1 C 0.16 -7.021 -0.781 5.050 B O4' DT 16 ATOM B O4' DT 2 7 1.00 1 O 0.16 -8.624 -1.290 6.759 B C3' DT 16 ATOM B C3' DT 2 7 1.00 1 C 0.17 -9.679 -2.253 6.651 B O3' DT 16 ATOM B O3' DT 2 7 1.00 1 O 0.15 -7.311 -1.964 7.094 B C2' DT 16 ATOM B C2' DT 2 7 1.00 1 C 0.15 -6.419 -1.781 5.885 B C1' DT 16 ATOM B C1' DT 2 7 1.00 1 C 0.14 -5.075 -1.367 6.297 B N1 DT 16 ATOM B N1 DT 2 7 1.00 1 N 0.14 -4.042 -2.251 6.096 B C2 DT 16 ATOM B C2 DT 2 7 1.00 1 C 0.15 -4.225 -3.386 5.666 B O2 DT 16 ATOM B O2 DT 2 7 1.00 1 O 0.13 -2.790 -1.799 6.439 B N3 DT 16 ATOM B N3 DT 2 7 1.00 1 N 0.13 -2.484 -0.555 6.961 B C4 DT 16 ATOM B C4 DT 2 7 1.00 1 C 0.14 -1.321 -0.253 7.212 B O4 DT 16 ATOM B O4 DT 2 7 1.00 1 O 0.14 -3.636 0.300 7.148 B C5 DT 16 ATOM B C5 DT 2 7 1.00 1 C 0.15 -3.462 1.702 7.734 B C7 DT 16 ATOM B C7 DT 2 7 1.00 1 C 0.14 -4.866 -0.127 6.818 B C6 DT 16 ATOM B C6 DT 2 7 1.00 1 C 0.14 -10.011 -3.265 7.858 B P DC 17 ATOM B P DC 2 8 1.00 1 P 0.14 -11.143 -4.123 7.440 B OP1 DC 17 ATOM B OP1 DC 2 8 1.00 1 O 0.15 -10.103 -2.478 9.108 B OP2 DC 17 ATOM B OP2 DC 2 8 1.00 1 O 0.15 -8.678 -4.179 7.933 B O5' DC 17 ATOM B O5' DC 2 8 1.00 1 O 0.19 -8.553 -5.372 7.146 B C5' DC 17 ATOM B C5' DC 2 8 1.00 1 C 0.21 -7.407 -6.265 7.639 B C4' DC 17 ATOM B C4' DC 2 8 1.00 1 C 0.19 -6.124 -5.666 7.409 B O4' DC 17 ATOM B O4' DC 2 8 1.00 1 O 0.21 -7.513 -6.536 9.119 B C3' DC 17 ATOM B C3' DC 2 8 1.00 1 C 0.25 -8.170 -7.787 9.370 B O3' DC 17 ATOM B O3' DC 2 8 1.00 1 O 0.21 -6.079 -6.563 9.595 B C2' DC 17 ATOM B C2' DC 2 8 1.00 1 C 0.20 -5.227 -6.166 8.409 B C1' DC 17 ATOM B C1' DC 2 8 1.00 1 C 0.17 -4.230 -5.149 8.783 B N1 DC 17 ATOM B N1 DC 2 8 1.00 1 N 0.17 -2.885 -5.478 8.702 B C2 DC 17 ATOM B C2 DC 2 8 1.00 1 C 0.18 -2.540 -6.614 8.383 B O2 DC 17 ATOM B O2 DC 2 8 1.00 1 O 0.15 -1.970 -4.514 8.995 B N3 DC 17 ATOM B N3 DC 2 8 1.00 1 N 0.14 -2.359 -3.282 9.349 B C4 DC 17 ATOM B C4 DC 2 8 1.00 1 C 0.15 -1.427 -2.372 9.633 B N4 DC 17 ATOM B N4 DC 2 8 1.00 1 N 0.15 -3.755 -2.946 9.430 B C5 DC 17 ATOM B C5 DC 2 8 1.00 1 C 0.16 -4.638 -3.912 9.147 B C6 DC 17 ATOM B C6 DC 2 8 1.00 1 C 0.31 -8.590 -8.219 10.866 B P DC 18 ATOM B P DC 2 9 1.00 1 P 0.37 -9.729 -9.158 10.773 B OP1 DC 18 ATOM B OP1 DC 2 9 1.00 1 O 0.31 -8.711 -6.994 11.689 B OP2 DC 18 ATOM B OP2 DC 2 9 1.00 1 O 0.35 -7.300 -9.038 11.374 B O5' DC 18 ATOM B O5' DC 2 9 1.00 1 O 0.38 -7.065 -10.386 10.944 B C5' DC 18 ATOM B C5' DC 2 9 1.00 1 C 0.41 -5.733 -10.906 11.475 B C4' DC 18 ATOM B C4' DC 2 9 1.00 1 C 0.38 -4.646 -10.078 11.030 B O4' DC 18 ATOM B O4' DC 2 9 1.00 1 O 0.45 -5.730 -10.921 12.979 B C3' DC 18 ATOM B C3' DC 2 9 1.00 1 C 0.52 -5.929 -12.244 13.473 B O3' DC 18 ATOM B O3' DC 2 9 1.00 1 O 0.44 -4.371 -10.389 13.380 B C2' DC 18 ATOM B C2' DC 2 9 1.00 1 C 0.38 -3.720 -9.874 12.110 B C1' DC 18 ATOM B C1' DC 2 9 1.00 1 C 0.32 -3.379 -8.446 12.242 B N1 DC 18 ATOM B N1 DC 2 9 1.00 1 N 0.30 -2.038 -8.096 12.243 B C2 DC 18 ATOM B C2 DC 2 9 1.00 1 C 0.32 -1.170 -8.961 12.151 B O2 DC 18 ATOM B O2 DC 2 9 1.00 1 O 0.26 -1.717 -6.779 12.359 B N3 DC 18 ATOM B N3 DC 2 9 1.00 1 N 0.25 -2.670 -5.846 12.472 B C4 DC 18 ATOM B C4 DC 2 9 1.00 1 C 0.25 -2.318 -4.568 12.583 B N4 DC 18 ATOM B N4 DC 2 9 1.00 1 N 0.27 -4.053 -6.201 12.474 B C5 DC 18 ATOM B C5 DC 2 9 1.00 1 C 0.30 -4.361 -7.508 12.357 B C6 DC 18 ATOM B C6 DC 2 9 1.00 1 C 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Nishizaki, T. Iwai, S. Ohkubo, T. Kojima, C. Nakamura, H. Kyogoku, Y. Ohtsuka, E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking US Biochemistry BICHAW 0033 0006-2960 35 4016 4025 10.1021/bi9519821 8672435 Solution Strucutres of DNA duplexes containing a DNA x RNA hybrid region, d(GG)r(AGAU)d(GAC) x d(GTCATCTCC) and d(GGAGA)r(UGAC) x d(GTCATCTCC). 1996 10.2210/pdb1drn/pdb pdb_00001drn 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL, 50MM NA PHOSPHATE, 3MM EDTA 2854.833 DNA/RNA (5'-D(*GP*GP*AP*GP*A)-R(P*UP*GP*AP*C)-3') 1 syn polymer CRYSTALLIZATION CONDITIONS\: PH 7.0, 298K, 100MM NACL, 50MM NA PHOSPHATE, 3MM EDTA 2666.761 DNA (5'-D(*GP*TP*CP*AP*TP*CP*TP*CP*C)-3') 1 syn polymer DDH DDH no no (DG)(DG)(DA)(DG)(DA)UGAC GGAGAUGAC A polydeoxyribonucleotide/polyribonucleotide hybrid no no (DG)(DT)(DC)(DA)(DT)(DC)(DT)(DC)(DC) GTCATCTCC B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n -0.669 1 19 A 1 B 18 -1.966 A_DG1:DC18_B 1 -3.214 -0.475 0.079 -0.391 -0.117 1 19 A 2 B 17 3.674 A_DG2:DC17_B 2 0.604 -0.476 -0.101 -0.057 -0.582 1 20 A 3 B 16 6.094 A_DA3:DT16_B 3 -2.994 -0.748 -0.035 -0.438 -0.065 1 19 A 4 B 15 2.647 A_DG4:DC15_B 4 -2.404 -1.038 0.034 -0.398 -1.605 1 20 A 5 B 14 5.445 A_DA5:DT14_B 5 -4.396 -0.580 -0.021 -0.345 1.851 1 20 A 6 B 13 0.436 A_U6:DA13_B 6 -1.525 0.465 -0.109 -0.343 -1.969 1 19 A 7 B 12 7.669 A_G7:DC12_B 7 -4.804 -1.334 0.015 -0.452 0.235 1 20 A 8 B 11 -0.771 A_A8:DT11_B 8 -5.307 -0.436 0.063 -0.381 4.268 1 19 A 9 B 10 4.174 A_C9:DG10_B 9 -3.614 1.405 -0.142 -0.496 3.279 33.648 A A 1 2 21.508 B B 18 17 3.488 12.168 0.557 0.212 AA_DG1DG2:DC17DC18_BB 1 -2.911 5.145 31.298 -1.767 -1.473 2.730 30.363 A A 2 3 10.278 B B 17 16 3.086 5.341 -0.057 -1.689 AA_DG2DA3:DT16DC17_BB 2 -4.059 7.811 29.630 -4.192 -0.625 4.025 29.528 A A 3 4 -11.501 B B 16 15 3.930 -5.825 0.180 -0.896 AA_DA3DG4:DC15DT16_BB 3 -0.617 1.217 28.954 -0.236 -0.515 3.043 34.429 A A 4 5 8.671 B B 15 14 3.193 5.114 -0.143 -0.820 AA_DG4DA5:DT14DC15_BB 4 -0.368 0.623 34.056 -2.149 0.186 3.077 35.507 A A 5 6 2.334 B B 14 13 3.118 1.423 0.425 -0.963 AA_DA5U6:DA13DT14_BB 5 -0.126 0.207 35.479 -1.777 -0.714 2.778 23.905 A A 6 7 8.018 B B 13 12 3.046 3.294 0.140 -1.241 AA_U6G7:DC12DA13_BB 6 -4.189 10.197 23.312 -3.964 -1.567 3.443 44.906 A A 7 8 4.117 B B 12 11 3.388 3.141 -0.980 0.221 AA_G7A8:DT11DC12_BB 7 -2.570 3.369 44.732 -0.008 1.039 3.620 40.561 A A 8 9 -0.317 B B 11 10 3.577 -0.220 0.688 -0.701 AA_A8C9:DG10DT11_BB 8 2.953 -4.264 40.457 -0.985 -0.631 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1996-04-03 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site MINIMIZED AVERAGE STRUCTURE Y BNL 1995-11-15 REL REL A SUBSTRATE OF RNASE H sample A SUBSTRATE OF RNASE H sample 1 100 mM 50 mM 3 mM 7.0 298 K RMSD BOND DISTANCES 0.0077 ANGSTROMS RMSD BOND ANGLES 1.40 DEGREES NUMBER OF ATOMS USED IN REFINEMENT. NUMBER OF PROTEIN ATOMS 0 NUMBER OF NUCLEIC ACID ATOMS 366 NUMBER OF HETEROGEN ATOMS 0 NUMBER OF SOLVENT ATOMS 0 THE STRUCTURES WAS REFINED BY A COMBINATION OF RESTRAINED MOLECULAR DYNAMICS USING THE X-PLOR (V3.1F) PROGRAM (BRUNGER 1988) AND FULL RELAXATION MATRIX REFINEMENT OF THE TWO-DIMENSIONAL NUCLEAR OVERHAUSER EFFECT SPECTRUM AT 150 MSEC. MOLECULAR DYNAMICS, MATRIX RELAXATION BRUNGER refinement X-PLOR 3.1F G 1 n 1 DG 1 A G 2 n 2 DG 2 A A 3 n 3 DA 3 A G 4 n 4 DG 4 A A 5 n 5 DA 5 A U 6 n 6 U 6 A G 7 n 7 G 7 A A 8 n 8 A 8 A C 9 n 9 C 9 A G 10 n 1 DG 10 B T 11 n 2 DT 11 B C 12 n 3 DC 12 B A 13 n 4 DA 13 B T 14 n 5 DT 14 B C 15 n 6 DC 15 B T 16 n 7 DT 16 B C 17 n 8 DC 17 B C 18 n 9 DC 18 B author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 2.13 0.30 108.30 110.43 A A A O4' C1' N9 DG DG DG 1 1 1 N 1 4.60 0.50 113.10 117.70 A A A N7 C8 N9 DG DG DG 1 1 1 N 1 -2.65 0.40 106.40 103.75 A A A C8 N9 C4 DG DG DG 1 1 1 N 1 3.36 0.30 108.30 111.66 A A A O4' C1' N9 DG DG DG 2 2 2 N 1 4.38 0.50 113.10 117.48 A A A N7 C8 N9 DG DG DG 2 2 2 N 1 -2.72 0.40 106.40 103.68 A A A C8 N9 C4 DG DG DG 2 2 2 N 1 3.13 0.30 108.30 111.43 A A A O4' C1' N9 DA DA DA 3 3 3 N 1 4.04 0.50 113.80 117.84 A A A N7 C8 N9 DA DA DA 3 3 3 N 1 3.22 0.30 108.30 111.52 A A A O4' C1' N9 DG DG DG 4 4 4 N 1 4.62 0.50 113.10 117.72 A A A N7 C8 N9 DG DG DG 4 4 4 N 1 -2.48 0.40 106.40 103.92 A A A C8 N9 C4 DG DG DG 4 4 4 N 1 3.08 0.30 108.30 111.38 A A A O4' C1' N9 DA DA DA 5 5 5 N 1 4.00 0.50 113.80 117.80 A A A N7 C8 N9 DA DA DA 5 5 5 N 1 5.24 0.80 101.50 106.74 A A A C3' C2' C1' G G G 7 7 7 N 1 4.53 0.70 108.50 113.03 A A A O4' C1' N9 G G G 7 7 7 N 1 4.55 0.50 113.10 117.65 A A A N7 C8 N9 G G G 7 7 7 N 1 -2.52 0.40 106.40 103.88 A A A C8 N9 C4 G G G 7 7 7 N 1 3.90 0.50 113.80 117.70 A A A N7 C8 N9 A A A 8 8 8 N 1 2.82 0.30 108.30 111.12 B B B O4' C1' N9 DG DG DG 10 10 10 N 1 4.70 0.50 113.10 117.80 B B B N7 C8 N9 DG DG DG 10 10 10 N 1 -2.59 0.40 106.40 103.81 B B B C8 N9 C4 DG DG DG 10 10 10 N 1 2.96 0.30 108.30 111.26 B B B O4' C1' N1 DT DT DT 11 11 11 N 1 2.22 0.30 108.30 110.52 B B B O4' C1' N1 DC DC DC 12 12 12 N 1 3.63 0.30 108.30 111.93 B B B O4' C1' N9 DA DA DA 13 13 13 N 1 3.80 0.50 113.80 117.60 B B B N7 C8 N9 DA DA DA 13 13 13 N 1 -3.68 0.60 122.90 119.22 B B B C6 C5 C7 DT DT DT 14 14 14 N 1 2.90 0.30 108.30 111.20 B B B O4' C1' N1 DC DC DC 15 15 15 N 1 2.28 0.30 108.30 110.58 B B B O4' C1' N1 DT DT DT 16 16 16 N 1 2.80 0.30 108.30 111.10 B B B O4' C1' N1 DC DC DC 17 17 17 N 1 2.42 0.30 108.30 110.72 B B B O4' C1' N1 DC DC DC 18 18 18 N model building X-PLOR refinement X-PLOR phasing X-PLOR NMR SOLUTION STRUCTURE OF THE DNA DUPLEX CONTAINING DNA/RNA HYBRID REGION, D(GGAGA)R(UGAC)/D(GTCATCTCC) 1 N N 2 N N hydrog WATSON-CRICK A DG 1 A N1 DG 1 1_555 B DC 18 B N3 DC 9 1_555 hydrog WATSON-CRICK A DG 1 A N2 DG 1 1_555 B DC 18 B O2 DC 9 1_555 hydrog WATSON-CRICK A DG 1 A O6 DG 1 1_555 B DC 18 B N4 DC 9 1_555 hydrog WATSON-CRICK A DG 2 A N1 DG 2 1_555 B DC 17 B N3 DC 8 1_555 hydrog WATSON-CRICK A DG 2 A N2 DG 2 1_555 B DC 17 B O2 DC 8 1_555 hydrog WATSON-CRICK A DG 2 A O6 DG 2 1_555 B DC 17 B N4 DC 8 1_555 hydrog WATSON-CRICK A DA 3 A N1 DA 3 1_555 B DT 16 B N3 DT 7 1_555 hydrog WATSON-CRICK A DA 3 A N6 DA 3 1_555 B DT 16 B O4 DT 7 1_555 hydrog WATSON-CRICK A DG 4 A N1 DG 4 1_555 B DC 15 B N3 DC 6 1_555 hydrog WATSON-CRICK A DG 4 A N2 DG 4 1_555 B DC 15 B O2 DC 6 1_555 hydrog WATSON-CRICK A DG 4 A O6 DG 4 1_555 B DC 15 B N4 DC 6 1_555 hydrog WATSON-CRICK A DA 5 A N1 DA 5 1_555 B DT 14 B N3 DT 5 1_555 hydrog WATSON-CRICK A DA 5 A N6 DA 5 1_555 B DT 14 B O4 DT 5 1_555 hydrog WATSON-CRICK A U 6 A N3 U 6 1_555 B DA 13 B N1 DA 4 1_555 hydrog WATSON-CRICK A U 6 A O4 U 6 1_555 B DA 13 B N6 DA 4 1_555 hydrog WATSON-CRICK A G 7 A N1 G 7 1_555 B DC 12 B N3 DC 3 1_555 hydrog WATSON-CRICK A G 7 A N2 G 7 1_555 B DC 12 B O2 DC 3 1_555 hydrog WATSON-CRICK A G 7 A O6 G 7 1_555 B DC 12 B N4 DC 3 1_555 hydrog WATSON-CRICK A A 8 A N1 A 8 1_555 B DT 11 B N3 DT 2 1_555 hydrog WATSON-CRICK A A 8 A N6 A 8 1_555 B DT 11 B O4 DT 2 1_555 hydrog WATSON-CRICK A C 9 A N3 C 9 1_555 B DG 10 B N1 DG 1 1_555 hydrog WATSON-CRICK A C 9 A N4 C 9 1_555 B DG 10 B O6 DG 1 1_555 hydrog WATSON-CRICK A C 9 A O2 C 9 1_555 B DG 10 B N2 DG 1 1_555 DNA-RNA HYBRID DOUBLE HELIX, DNA/RNA HYBRID, DNA-RNA HYBRID 1DRN PDB 1 1DRN 1DRN PDB 2 1DRN 1 9 1DRN 1 9 1DRN A 1 1 9 10 18 1DRN 10 18 1DRN B 2 1 9 1 P 1