1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Yao, S.
Torres, A.M.
Azad, A.A.
Macreadie, I.G.
Norton, R.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
Protein Pept.Lett.
PPELEN
2077
0929-8665
5
127
134
-1
Helical structure of polypeptides from the C-terminal half of HIV-1 VPR.
1998
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
93
111
Vpr Protein of Human Immunodeficiency Virus Type 1 Forms Cation-Selective Channels in Planar Lipid Bilayers
1996
US
Proc.Natl.Acad.Sci.USA
PNASA6
0040
0027-8424
92
2770
A Domain of Human Immunodeficiency Virus Type 1 Vpr Containing Repeated H(S/F)Rig Amino Acid Motifs Causes Cell Growth Arrest and Structural Defects
1995
10.2210/pdb1dsj/pdb
pdb_00001dsj
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3057.594
VPR PROTEIN
RESIDUES 50 - 75
1
man
polymer
no
yes
(ACE)YGDTWAGVEAIIRILQQLLFIHFRIG(NH2)
XYGDTWAGVEAIIRILQQLLFIHFRIGX
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Lentivirus
sample
11676
Human immunodeficiency virus 1
database_2
pdbx_database_status
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
Other
1
0
1998-07-01
1
1
2008-03-24
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.process_site
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
Y
BNL
1997-10-23
REL
REL
20
3.3
298
K
BRUNGER
refinement
X-PLOR
3.1
ACE
50
n
1
A
ACE
50
A
TYR
50
n
2
TYR
50
A
GLY
51
n
3
GLY
51
A
ASP
52
n
4
ASP
52
A
THR
53
n
5
THR
53
A
TRP
54
n
6
TRP
54
A
ALA
55
n
7
ALA
55
A
GLY
56
n
8
GLY
56
A
VAL
57
n
9
VAL
57
A
GLU
58
n
10
GLU
58
A
ALA
59
n
11
ALA
59
A
ILE
60
n
12
ILE
60
A
ILE
61
n
13
ILE
61
A
ARG
62
n
14
ARG
62
A
ILE
63
n
15
ILE
63
A
LEU
64
n
16
LEU
64
A
GLN
65
n
17
GLN
65
A
GLN
66
n
18
GLN
66
A
LEU
67
n
19
LEU
67
A
LEU
68
n
20
LEU
68
A
PHE
69
n
21
PHE
69
A
ILE
70
n
22
ILE
70
A
HIS
71
n
23
HIS
71
A
PHE
72
n
24
PHE
72
A
ARG
73
n
25
ARG
73
A
ILE
74
n
26
ILE
74
A
GLY
75
n
27
GLY
75
A
NH2
76
n
28
NH2
76
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ARG
62
0.285
SIDE CHAIN
1
A
ARG
73
0.295
SIDE CHAIN
2
A
ARG
62
0.290
SIDE CHAIN
2
A
ARG
73
0.304
SIDE CHAIN
3
A
ARG
62
0.286
SIDE CHAIN
3
A
ARG
73
0.317
SIDE CHAIN
4
A
ARG
62
0.274
SIDE CHAIN
4
A
ARG
73
0.292
SIDE CHAIN
5
A
ARG
62
0.250
SIDE CHAIN
5
A
ARG
73
0.263
SIDE CHAIN
6
A
ARG
62
0.242
SIDE CHAIN
6
A
ARG
73
0.315
SIDE CHAIN
7
A
ARG
62
0.304
SIDE CHAIN
7
A
ARG
73
0.255
SIDE CHAIN
8
A
ARG
62
0.314
SIDE CHAIN
8
A
ARG
73
0.267
SIDE CHAIN
9
A
ARG
62
0.305
SIDE CHAIN
9
A
ARG
73
0.311
SIDE CHAIN
10
A
ARG
62
0.319
SIDE CHAIN
10
A
ARG
73
0.289
SIDE CHAIN
11
A
ARG
62
0.219
SIDE CHAIN
11
A
ARG
73
0.298
SIDE CHAIN
12
A
ARG
62
0.222
SIDE CHAIN
12
A
ARG
73
0.317
SIDE CHAIN
13
A
ARG
62
0.315
SIDE CHAIN
13
A
ARG
73
0.291
SIDE CHAIN
14
A
ARG
62
0.175
SIDE CHAIN
15
A
ARG
62
0.311
SIDE CHAIN
15
A
ARG
73
0.303
SIDE CHAIN
16
A
ARG
62
0.306
SIDE CHAIN
16
A
ARG
73
0.307
SIDE CHAIN
17
A
ARG
62
0.238
SIDE CHAIN
17
A
ARG
73
0.227
SIDE CHAIN
18
A
ARG
62
0.320
SIDE CHAIN
18
A
ARG
73
0.302
SIDE CHAIN
19
A
ARG
62
0.308
SIDE CHAIN
19
A
ARG
73
0.088
SIDE CHAIN
20
A
ARG
62
0.312
SIDE CHAIN
20
A
ARG
73
0.223
SIDE CHAIN
12
-3.47
0.50
120.30
116.83
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
62
62
62
N
1
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
2
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
3
A
A
NE2
CD2
HIS
HIS
71
71
-0.066
0.011
1.373
1.307
N
4
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
5
A
A
NE2
CD2
HIS
HIS
71
71
-0.068
0.011
1.373
1.305
N
6
A
A
NE2
CD2
HIS
HIS
71
71
-0.068
0.011
1.373
1.305
N
8
A
A
NE2
CD2
HIS
HIS
71
71
-0.068
0.011
1.373
1.305
N
9
A
A
NE2
CD2
HIS
HIS
71
71
-0.066
0.011
1.373
1.307
N
10
A
A
NE2
CD2
HIS
HIS
71
71
-0.068
0.011
1.373
1.305
N
12
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
13
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
14
A
A
NE2
CD2
HIS
HIS
71
71
-0.066
0.011
1.373
1.307
N
15
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
16
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
17
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
18
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
19
A
A
NE2
CD2
HIS
HIS
71
71
-0.069
0.011
1.373
1.304
N
20
A
A
NE2
CD2
HIS
HIS
71
71
-0.067
0.011
1.373
1.306
N
1
A
LEU
64
-76.44
-104.92
1
A
GLN
65
-59.18
4.01
2
A
LEU
64
-51.60
-79.59
3
A
LEU
64
-47.76
-79.97
4
A
ASP
52
145.20
-38.61
4
A
LEU
64
-48.67
-81.53
5
A
LEU
64
-38.26
-89.76
6
A
LEU
64
-55.30
-96.97
6
A
GLN
65
-69.72
3.87
7
A
LEU
64
-63.42
-73.29
8
A
LEU
64
-44.66
-84.21
9
A
LEU
64
-99.95
-90.15
10
A
ASP
52
140.37
-64.66
10
A
LEU
64
-69.31
-102.55
10
A
GLN
65
-64.13
1.03
11
A
ASP
52
-142.15
-34.67
11
A
LEU
64
-99.51
-96.79
12
A
LEU
64
-95.26
-114.03
12
A
GLN
65
-68.69
20.66
13
A
ASP
52
-81.77
39.41
13
A
LEU
64
-45.68
-87.02
14
A
LEU
64
-57.21
-94.48
15
A
ASP
52
-172.18
16.27
16
A
LEU
64
-94.73
-99.18
16
A
GLN
65
-65.67
0.02
17
A
TRP
54
-49.37
-19.70
17
A
LEU
64
-55.73
-75.96
18
A
LEU
64
-85.56
-95.37
18
A
GLN
65
-68.24
4.51
19
A
ASP
52
-168.94
-10.56
19
A
LEU
64
-58.64
-80.58
20
A
LEU
64
-43.43
-75.46
model building
X-PLOR
3.1
refinement
X-PLOR
3.1
phasing
X-PLOR
3.1
NMR SOLUTION STRUCTURE OF VPR50_75, 20 STRUCTURES
1
Y
N
A
THR
53
A
THR
5
HELX_P
SEE REMARK 650
A
ILE
74
A
ILE
26
1
A
22
covale
1.311
both
A
A
ACE
50
A
C
ACE
1
1_555
A
TYR
50
A
N
TYR
2
1_555
covale
1.298
both
A
GLY
75
A
C
GLY
27
1_555
A
NH2
76
A
N
NH2
28
1_555
VIRAL PEPTIDE
VIRAL PEPTIDE, POLYPEPTIDE
VPR_HV1N5
UNP
1
1
P12520
MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSR
IGVTRQRRARNGASRS
50
75
1DSJ
50
75
P12520
A
1
2
27
1
P 1