1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Yao, S. Torres, A.M. Azad, A.A. Macreadie, I.G. Norton, R.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking H2 N 16.023 AMINO GROUP non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE Protein Pept.Lett. PPELEN 2077 0929-8665 5 127 134 -1 Helical structure of polypeptides from the C-terminal half of HIV-1 VPR. 1998 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 93 111 Vpr Protein of Human Immunodeficiency Virus Type 1 Forms Cation-Selective Channels in Planar Lipid Bilayers 1996 US Proc.Natl.Acad.Sci.USA PNASA6 0040 0027-8424 92 2770 A Domain of Human Immunodeficiency Virus Type 1 Vpr Containing Repeated H(S/F)Rig Amino Acid Motifs Causes Cell Growth Arrest and Structural Defects 1995 10.2210/pdb1dsj/pdb pdb_00001dsj 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3057.594 VPR PROTEIN RESIDUES 50 - 75 1 man polymer no yes (ACE)YGDTWAGVEAIIRILQQLLFIHFRIG(NH2) XYGDTWAGVEAIIRILQQLLFIHFRIGX A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus sample 11676 Human immunodeficiency virus 1 database_2 pdbx_database_status pdbx_struct_assembly pdbx_struct_oper_list struct_conn repository Initial release Version format compliance Version format compliance Database references Derived calculations Other 1 0 1998-07-01 1 1 2008-03-24 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id Y BNL 1997-10-23 REL REL 20 3.3 298 K BRUNGER refinement X-PLOR 3.1 ACE 50 n 1 A ACE 50 A TYR 50 n 2 TYR 50 A GLY 51 n 3 GLY 51 A ASP 52 n 4 ASP 52 A THR 53 n 5 THR 53 A TRP 54 n 6 TRP 54 A ALA 55 n 7 ALA 55 A GLY 56 n 8 GLY 56 A VAL 57 n 9 VAL 57 A GLU 58 n 10 GLU 58 A ALA 59 n 11 ALA 59 A ILE 60 n 12 ILE 60 A ILE 61 n 13 ILE 61 A ARG 62 n 14 ARG 62 A ILE 63 n 15 ILE 63 A LEU 64 n 16 LEU 64 A GLN 65 n 17 GLN 65 A GLN 66 n 18 GLN 66 A LEU 67 n 19 LEU 67 A LEU 68 n 20 LEU 68 A PHE 69 n 21 PHE 69 A ILE 70 n 22 ILE 70 A HIS 71 n 23 HIS 71 A PHE 72 n 24 PHE 72 A ARG 73 n 25 ARG 73 A ILE 74 n 26 ILE 74 A GLY 75 n 27 GLY 75 A NH2 76 n 28 NH2 76 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A ARG 62 0.285 SIDE CHAIN 1 A ARG 73 0.295 SIDE CHAIN 2 A ARG 62 0.290 SIDE CHAIN 2 A ARG 73 0.304 SIDE CHAIN 3 A ARG 62 0.286 SIDE CHAIN 3 A ARG 73 0.317 SIDE CHAIN 4 A ARG 62 0.274 SIDE CHAIN 4 A ARG 73 0.292 SIDE CHAIN 5 A ARG 62 0.250 SIDE CHAIN 5 A ARG 73 0.263 SIDE CHAIN 6 A ARG 62 0.242 SIDE CHAIN 6 A ARG 73 0.315 SIDE CHAIN 7 A ARG 62 0.304 SIDE CHAIN 7 A ARG 73 0.255 SIDE CHAIN 8 A ARG 62 0.314 SIDE CHAIN 8 A ARG 73 0.267 SIDE CHAIN 9 A ARG 62 0.305 SIDE CHAIN 9 A ARG 73 0.311 SIDE CHAIN 10 A ARG 62 0.319 SIDE CHAIN 10 A ARG 73 0.289 SIDE CHAIN 11 A ARG 62 0.219 SIDE CHAIN 11 A ARG 73 0.298 SIDE CHAIN 12 A ARG 62 0.222 SIDE CHAIN 12 A ARG 73 0.317 SIDE CHAIN 13 A ARG 62 0.315 SIDE CHAIN 13 A ARG 73 0.291 SIDE CHAIN 14 A ARG 62 0.175 SIDE CHAIN 15 A ARG 62 0.311 SIDE CHAIN 15 A ARG 73 0.303 SIDE CHAIN 16 A ARG 62 0.306 SIDE CHAIN 16 A ARG 73 0.307 SIDE CHAIN 17 A ARG 62 0.238 SIDE CHAIN 17 A ARG 73 0.227 SIDE CHAIN 18 A ARG 62 0.320 SIDE CHAIN 18 A ARG 73 0.302 SIDE CHAIN 19 A ARG 62 0.308 SIDE CHAIN 19 A ARG 73 0.088 SIDE CHAIN 20 A ARG 62 0.312 SIDE CHAIN 20 A ARG 73 0.223 SIDE CHAIN 12 -3.47 0.50 120.30 116.83 A A A NE CZ NH2 ARG ARG ARG 62 62 62 N 1 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 2 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 3 A A NE2 CD2 HIS HIS 71 71 -0.066 0.011 1.373 1.307 N 4 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 5 A A NE2 CD2 HIS HIS 71 71 -0.068 0.011 1.373 1.305 N 6 A A NE2 CD2 HIS HIS 71 71 -0.068 0.011 1.373 1.305 N 8 A A NE2 CD2 HIS HIS 71 71 -0.068 0.011 1.373 1.305 N 9 A A NE2 CD2 HIS HIS 71 71 -0.066 0.011 1.373 1.307 N 10 A A NE2 CD2 HIS HIS 71 71 -0.068 0.011 1.373 1.305 N 12 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 13 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 14 A A NE2 CD2 HIS HIS 71 71 -0.066 0.011 1.373 1.307 N 15 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 16 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 17 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 18 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 19 A A NE2 CD2 HIS HIS 71 71 -0.069 0.011 1.373 1.304 N 20 A A NE2 CD2 HIS HIS 71 71 -0.067 0.011 1.373 1.306 N 1 A LEU 64 -76.44 -104.92 1 A GLN 65 -59.18 4.01 2 A LEU 64 -51.60 -79.59 3 A LEU 64 -47.76 -79.97 4 A ASP 52 145.20 -38.61 4 A LEU 64 -48.67 -81.53 5 A LEU 64 -38.26 -89.76 6 A LEU 64 -55.30 -96.97 6 A GLN 65 -69.72 3.87 7 A LEU 64 -63.42 -73.29 8 A LEU 64 -44.66 -84.21 9 A LEU 64 -99.95 -90.15 10 A ASP 52 140.37 -64.66 10 A LEU 64 -69.31 -102.55 10 A GLN 65 -64.13 1.03 11 A ASP 52 -142.15 -34.67 11 A LEU 64 -99.51 -96.79 12 A LEU 64 -95.26 -114.03 12 A GLN 65 -68.69 20.66 13 A ASP 52 -81.77 39.41 13 A LEU 64 -45.68 -87.02 14 A LEU 64 -57.21 -94.48 15 A ASP 52 -172.18 16.27 16 A LEU 64 -94.73 -99.18 16 A GLN 65 -65.67 0.02 17 A TRP 54 -49.37 -19.70 17 A LEU 64 -55.73 -75.96 18 A LEU 64 -85.56 -95.37 18 A GLN 65 -68.24 4.51 19 A ASP 52 -168.94 -10.56 19 A LEU 64 -58.64 -80.58 20 A LEU 64 -43.43 -75.46 model building X-PLOR 3.1 refinement X-PLOR 3.1 phasing X-PLOR 3.1 NMR SOLUTION STRUCTURE OF VPR50_75, 20 STRUCTURES 1 Y N A THR 53 A THR 5 HELX_P SEE REMARK 650 A ILE 74 A ILE 26 1 A 22 covale 1.311 both A A ACE 50 A C ACE 1 1_555 A TYR 50 A N TYR 2 1_555 covale 1.298 both A GLY 75 A C GLY 27 1_555 A NH2 76 A N NH2 28 1_555 VIRAL PEPTIDE VIRAL PEPTIDE, POLYPEPTIDE VPR_HV1N5 UNP 1 1 P12520 MEQAPEDQGPQREPYNEWTLELLEELKSEAVRHFPRIWLHNLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSR IGVTRQRRARNGASRS 50 75 1DSJ 50 75 P12520 A 1 2 27 1 P 1