1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Klein, D.J.
Johnson, P.E.
Zollars, E.S.
De Guzman, R.N.
Summers, M.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
39
1604
1612
10.1021/bi9922493
10677209
The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle.
2000
10.2210/pdb1dsq/pdb
pdb_00001dsq
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
2328.733
NUCLEIC ACID BINDING PROTEIN P14
ZINC FINGER 1 OF NUCLEOCAPSID PROTEIN
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
KGPVCFSCGKTGHIKRDCKEE
KGPVCFSCGKTGHIKRDCKEE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Betaretrovirus
Escherichia
sample
11757
Mouse mammary tumor virus
562
Escherichia coli
BL21(DE3)PLYSE
PLASMID
PET-3D
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-01-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (C-TERMINAL ZINC FINGER)
RCSB
Y
RCSB
2000-01-08
REL
REL
ZN
ZINC ION
target function
100
20
~50 mM
7.0
AMBIENT
25
K
DATA WAS COLLECTED ON THE INTACT NUCLEOCAPSID PROTEIN BUT THE STRUCTURES OF THE N- AND C-TERMINAL ZINC FINGERS WERE CALCULATED INDEPENDENTLY. THESE TWO DOMAINS DO NOT INTERACT WITH EACH OTHER
1
lowest target function
1 MM UNLABELLED MMTV NC, 25 MM ACETATE (D3), PH 7.0, 20 MM NACL, 0.1 MM ZNCL2, 0.1 MM BME
GUNTERT
refinement
DYANA
1.5
DELAGLIO
processing
NMRPipe
1.7
JOHNSON
data analysis
NMRView
3
600
Bruker
AVANCE
600
GE
PSG
ZN
44
2
ZN
ZN
144
A
LYS
27
n
1
LYS
27
A
GLY
28
n
2
GLY
28
A
PRO
29
n
3
PRO
29
A
VAL
30
n
4
VAL
30
A
CYS
31
n
5
CYS
31
A
PHE
32
n
6
PHE
32
A
SER
33
n
7
SER
33
A
CYS
34
n
8
CYS
34
A
GLY
35
n
9
GLY
35
A
LYS
36
n
10
LYS
36
A
THR
37
n
11
THR
37
A
GLY
38
n
12
GLY
38
A
HIS
39
n
13
HIS
39
A
ILE
40
n
14
ILE
40
A
LYS
41
n
15
LYS
41
A
ARG
42
n
16
ARG
42
A
ASP
43
n
17
ASP
43
A
CYS
44
n
18
CYS
44
A
LYS
45
n
19
LYS
45
A
GLU
46
n
20
GLU
46
A
GLU
47
n
21
GLU
47
A
author_defined_assembly
1
monomeric
A
CYS
31
A
SG
CYS
5
1_555
A
ZN
144
B
ZN
ZN
1_555
A
CYS
34
A
SG
CYS
8
1_555
85.0
A
CYS
31
A
SG
CYS
5
1_555
A
ZN
144
B
ZN
ZN
1_555
A
HIS
39
A
NE2
HIS
13
1_555
90.9
A
CYS
34
A
SG
CYS
8
1_555
A
ZN
144
B
ZN
ZN
1_555
A
HIS
39
A
NE2
HIS
13
1_555
106.3
A
CYS
31
A
SG
CYS
5
1_555
A
ZN
144
B
ZN
ZN
1_555
A
CYS
44
A
SG
CYS
18
1_555
98.4
A
CYS
34
A
SG
CYS
8
1_555
A
ZN
144
B
ZN
ZN
1_555
A
CYS
44
A
SG
CYS
18
1_555
158.2
A
HIS
39
A
NE2
HIS
13
1_555
A
ZN
144
B
ZN
ZN
1_555
A
CYS
44
A
SG
CYS
18
1_555
95.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
2
A
LYS
45
-153.56
64.06
2
A
GLU
46
-172.59
-46.74
3
A
GLU
46
-157.04
-59.46
4
A
LYS
45
-176.04
63.40
6
A
GLU
46
-165.63
-60.05
7
A
LYS
45
68.19
70.24
7
A
GLU
46
-136.48
-46.37
8
A
LYS
45
-159.18
65.28
8
A
GLU
46
-178.70
-37.63
9
A
GLU
46
177.68
-38.18
10
A
GLU
46
-153.11
-60.22
11
A
LYS
45
-174.91
64.92
14
A
LYS
45
44.32
89.28
15
A
LYS
45
-163.09
71.60
18
A
LYS
45
-171.74
80.34
19
A
LYS
45
74.31
60.66
20
A
LYS
45
-169.95
55.09
20
A
GLU
46
-160.59
-44.05
STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (ZINC FINGER 1)
1
N
N
2
N
N
metalc
2.358
A
CYS
31
A
SG
CYS
5
1_555
A
ZN
144
B
ZN
ZN
1_555
metalc
2.358
A
CYS
34
A
SG
CYS
8
1_555
A
ZN
144
B
ZN
ZN
1_555
metalc
2.082
A
HIS
39
A
NE2
HIS
13
1_555
A
ZN
144
B
ZN
ZN
1_555
metalc
2.301
A
CYS
44
A
SG
CYS
18
1_555
A
ZN
144
B
ZN
ZN
1_555
VIRAL PROTEIN
CCHC TYPE ZINC FINGER, VIRUS/VIRAL PROTEIN, Viral protein
GAG_MMTVC
UNP
1
P11284
523
543
1DSQ
27
47
P11284
A
1
1
21
BINDING SITE FOR RESIDUE ZN A 144
A
ZN
144
Software
4
A
CYS
31
A
CYS
5
4
1_555
A
CYS
34
A
CYS
8
4
1_555
A
HIS
39
A
HIS
13
4
1_555
A
CYS
44
A
CYS
18
4
1_555
1
P 1