1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Klein, D.J. Johnson, P.E. Zollars, E.S. De Guzman, R.N. Summers, M.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 39 1604 1612 10.1021/bi9922493 10677209 The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle. 2000 10.2210/pdb1dsq/pdb pdb_00001dsq 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2328.733 NUCLEIC ACID BINDING PROTEIN P14 ZINC FINGER 1 OF NUCLEOCAPSID PROTEIN 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no KGPVCFSCGKTGHIKRDCKEE KGPVCFSCGKTGHIKRDCKEE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n Betaretrovirus Escherichia sample 11757 Mouse mammary tumor virus 562 Escherichia coli BL21(DE3)PLYSE PLASMID PET-3D database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-01-28 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (C-TERMINAL ZINC FINGER) RCSB Y RCSB 2000-01-08 REL REL ZN ZINC ION target function 100 20 ~50 mM 7.0 AMBIENT 25 K DATA WAS COLLECTED ON THE INTACT NUCLEOCAPSID PROTEIN BUT THE STRUCTURES OF THE N- AND C-TERMINAL ZINC FINGERS WERE CALCULATED INDEPENDENTLY. THESE TWO DOMAINS DO NOT INTERACT WITH EACH OTHER 1 lowest target function 1 MM UNLABELLED MMTV NC, 25 MM ACETATE (D3), PH 7.0, 20 MM NACL, 0.1 MM ZNCL2, 0.1 MM BME GUNTERT refinement DYANA 1.5 DELAGLIO processing NMRPipe 1.7 JOHNSON data analysis NMRView 3 600 Bruker AVANCE 600 GE PSG ZN 44 2 ZN ZN 144 A LYS 27 n 1 LYS 27 A GLY 28 n 2 GLY 28 A PRO 29 n 3 PRO 29 A VAL 30 n 4 VAL 30 A CYS 31 n 5 CYS 31 A PHE 32 n 6 PHE 32 A SER 33 n 7 SER 33 A CYS 34 n 8 CYS 34 A GLY 35 n 9 GLY 35 A LYS 36 n 10 LYS 36 A THR 37 n 11 THR 37 A GLY 38 n 12 GLY 38 A HIS 39 n 13 HIS 39 A ILE 40 n 14 ILE 40 A LYS 41 n 15 LYS 41 A ARG 42 n 16 ARG 42 A ASP 43 n 17 ASP 43 A CYS 44 n 18 CYS 44 A LYS 45 n 19 LYS 45 A GLU 46 n 20 GLU 46 A GLU 47 n 21 GLU 47 A author_defined_assembly 1 monomeric A CYS 31 A SG CYS 5 1_555 A ZN 144 B ZN ZN 1_555 A CYS 34 A SG CYS 8 1_555 85.0 A CYS 31 A SG CYS 5 1_555 A ZN 144 B ZN ZN 1_555 A HIS 39 A NE2 HIS 13 1_555 90.9 A CYS 34 A SG CYS 8 1_555 A ZN 144 B ZN ZN 1_555 A HIS 39 A NE2 HIS 13 1_555 106.3 A CYS 31 A SG CYS 5 1_555 A ZN 144 B ZN ZN 1_555 A CYS 44 A SG CYS 18 1_555 98.4 A CYS 34 A SG CYS 8 1_555 A ZN 144 B ZN ZN 1_555 A CYS 44 A SG CYS 18 1_555 158.2 A HIS 39 A NE2 HIS 13 1_555 A ZN 144 B ZN ZN 1_555 A CYS 44 A SG CYS 18 1_555 95.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 2 A LYS 45 -153.56 64.06 2 A GLU 46 -172.59 -46.74 3 A GLU 46 -157.04 -59.46 4 A LYS 45 -176.04 63.40 6 A GLU 46 -165.63 -60.05 7 A LYS 45 68.19 70.24 7 A GLU 46 -136.48 -46.37 8 A LYS 45 -159.18 65.28 8 A GLU 46 -178.70 -37.63 9 A GLU 46 177.68 -38.18 10 A GLU 46 -153.11 -60.22 11 A LYS 45 -174.91 64.92 14 A LYS 45 44.32 89.28 15 A LYS 45 -163.09 71.60 18 A LYS 45 -171.74 80.34 19 A LYS 45 74.31 60.66 20 A LYS 45 -169.95 55.09 20 A GLU 46 -160.59 -44.05 STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (ZINC FINGER 1) 1 N N 2 N N metalc 2.358 A CYS 31 A SG CYS 5 1_555 A ZN 144 B ZN ZN 1_555 metalc 2.358 A CYS 34 A SG CYS 8 1_555 A ZN 144 B ZN ZN 1_555 metalc 2.082 A HIS 39 A NE2 HIS 13 1_555 A ZN 144 B ZN ZN 1_555 metalc 2.301 A CYS 44 A SG CYS 18 1_555 A ZN 144 B ZN ZN 1_555 VIRAL PROTEIN CCHC TYPE ZINC FINGER, VIRUS/VIRAL PROTEIN, Viral protein GAG_MMTVC UNP 1 P11284 523 543 1DSQ 27 47 P11284 A 1 1 21 BINDING SITE FOR RESIDUE ZN A 144 A ZN 144 Software 4 A CYS 31 A CYS 5 4 1_555 A CYS 34 A CYS 8 4 1_555 A HIS 39 A HIS 13 4 1_555 A CYS 44 A CYS 18 4 1_555 1 P 1