1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Kurz, M. Guba, W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C4 H9 N O3 119.119 D-allothreonine D-peptide linking C4 H8 N2 O4 148.117 n BETA-HYDROXYASPARAGINE L-peptide linking C4 H9 N O3 119.119 n ALLO-THREONINE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C8 H8 Cl N O3 201.607 n 3-CHLORO-4-HYDROXYPHENYLGLYCINE L-peptide linking C8 H9 N O3 167.162 (2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID L-peptide linking C3 H7 N O2 89.093 D-ALANINE D-peptide linking C9 H14 O2 154.206 (2Z,4E)-7-methylocta-2,4-dienoic acid non-polymer C8 H9 N O3 167.162 (2R)-amino(4-hydroxyphenyl)ethanoic acid D-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H12 N2 O2 132.161 D-ORNITHINE D-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking N 1 N N N 2 R C N 3 R C N 4 N O N 5 N C N 6 N C N 7 N O N 8 N O N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N N N 19 S C N 20 S C N 21 N O N 22 N C N 23 N O N 24 N N N 25 N C N 26 N O N 27 N O N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N N N 37 S C N 38 S C N 39 N C N 40 N O N 41 N C N 42 N O N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N N N 54 S C N 55 N C N 56 N O N 57 N C N 58 N C N 59 N O N 60 N N N 61 N O N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N N N 71 S C N 72 N C N 73 N O N 74 N O Y 75 N C Y 76 N C Y 77 N C N 78 N CL Y 79 N C N 80 N O Y 81 N C Y 82 N C N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N N N 92 S C N 93 N C N 94 N O Y 95 N C Y 96 N C Y 97 N C Y 98 N C N 99 N O Y 100 N C Y 101 N C N 102 N O N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N N N 113 R C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N C N 126 N O N 127 N C N 128 N C N 129 N C N 130 N C N 131 N C N 132 N C N 133 N C N 134 N C N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N N N 151 R C N 152 N C N 153 N O N 154 N O Y 155 N C Y 156 N C Y 157 N C Y 158 N C N 159 N O Y 160 N C Y 161 N C N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 N C N 173 N C N 174 N O N 175 N O N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N N N 182 S C N 183 N C N 184 N O N 185 N C N 186 N C N 187 N C N 188 N C N 189 N O N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 S C N 204 S C N 205 S C N 206 S C N 207 R C N 208 N C N 209 N O N 210 N O N 211 N O N 212 N O N 213 N O N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N N N 228 R C N 229 N C N 230 N C N 231 N C N 232 N N N 233 N O N 234 N O N 235 N C N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N doub N 28 N sing N 29 N sing N 30 N sing N 31 N doub N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N doub N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing Y 75 N doub Y 76 N sing Y 77 N sing N 78 N sing N 79 N sing Y 80 N doub N 81 N sing Y 82 N sing N 83 N sing Y 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N doub N 94 N sing Y 95 N doub Y 96 N sing Y 97 N sing N 98 N sing Y 99 N doub N 100 N sing N 101 N sing Y 102 N sing N 103 N sing Y 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 Z doub N 124 N sing N 125 N doub N 126 N sing N 127 E sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing Y 153 N doub Y 154 N sing Y 155 N sing N 156 N sing Y 157 N doub N 158 N sing N 159 N sing Y 160 N sing N 161 N sing Y 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N doub N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing Y 250 N doub Y 251 N sing Y 252 N sing N 253 N sing Y 254 N doub N 255 N sing Y 256 N doub N 257 N sing Y 258 N sing N 259 N sing N 260 N sing N 261 N sing US Biochemistry BICHAW 0033 0006-2960 35 12570 10.1021/BI961017Q 8823194 3D Structure of Ramoplanin: A Potent Inhibitor of Bacterial Cell Wall Synthesis. 1996 10.2210/pdb1dsr/pdb pdb_00001dsr 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 2111.610 RAMOPLANIN A2 1 nat polymer 342.297 alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose 1 man branched 154.206 (2Z,4E)-7-methylocta-2,4-dienoic acid 1 syn non-polymer A-166686,MDL 62,198) 2alpha-alpha-mannobiose no yes N(AHB)(GHP)(ORD)(2TL)(D4P)(GHP)(ALO)F(ORD)(D4P)(2TL)(D4P)GL(DAL)(CHP) NNGXTXGTFXXTXGLAG A polypeptide(L) n n n n n n n n n n n n n n n n n sample 1871 ACTINOPLANES SP. ATCC 33076 atom_site chem_comp entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_database_status pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen struct_asym struct_conn atom_site chem_comp chem_comp_atom chem_comp_bond database_2 struct_conn repository Initial release Carbohydrate remediation repository Remediation Version format compliance Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Other Atomic model Data collection Derived calculations Other Structure summary Atomic model Data collection Database references Derived calculations Structure summary 1 0 1997-02-12 1 1 2011-06-14 1 2 2011-07-13 1 3 2011-07-27 1 4 2012-12-12 2 0 2020-07-29 3 0 2023-11-15 _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.name _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type _pdbx_database_status.process_site _pdbx_struct_assembly_gen.asym_id_list _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag A MAN 18 n B MAN 1 A MAN 19 n B MAN 2 DManpa a-D-mannopyranose a-D-Manp Man Y BNL 1996-07-05 REL oligosaccharide DManpa1-2DManpa1-ROH 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a1122h-1a_1-5]/1-1/a2-b1 2 PDB2Glycan 1.1.0 WURCS [][D-1-deoxy-Manp]{[(2+1)][a-D-Manp]{}} 2 PDB-CARE LINUCS C1 O2 MAN MAN 2 1 2 O1 HO2 sing n n FA7 (2Z,4E)-7-methylocta-2,4-dienoic acid RAMOPLANIN IS A CYCLIC LIPOGLYCOPEPTIDE. HERE, RAMOPLANIN IS REPRESENTED BY GROUPING TOGETHER THE SEQUENCE (SEQRES) A FATTY ACID (FA7) AND TWO LIGANDS (HET) MAN. Antibiotic RAMOPLANIN A2 IS A CYCLIC HEPTADECAMER LIPOGLYCODEPSIPEPTIDE. THE SCAFFOLD IS A HEPTA CYCLIC PEPTIDE GLYCOSYLATED BY ONE DISACCHARIDE AND A FATTY ACID AT THE N-TERM. RAMOPLANIN A2 Lipoglycopeptide Metabolism oligosaccharide 2alpha-alpha-mannobiose Oligosaccharide ENERGY MINIMIZED SNAPSHOT EVERY 75 PS 450 6 NOESY 4.6 313 K 600 Bruker AMX 600 FA7 0 3 FA7 FA7 0 A ASN 1 n 1 ASN 1 A AHB 2 n 2 AHB 2 A GHP 3 n 3 GHP 3 A ORD 4 n 4 ORD 4 A 2TL 5 n 5 2TL 5 A D4P 6 n 6 D4P 6 A GHP 7 n 7 GHP 7 A ALO 8 n 8 ALO 8 A PHE 9 n 9 PHE 9 A ORD 10 n 10 ORD 10 A D4P 11 n 11 D4P 11 A 2TL 12 n 12 2TL 12 A D4P 13 n 13 D4P 13 A GLY 14 n 14 GLY 14 A LEU 15 n 15 LEU 15 A DAL 16 n 16 DAL 16 A CHP 17 n 17 CHP 17 A author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ORD 4 A N ORD 4 A O 2TL 12 A O 2TL 12 1 A A H2 C2 ASN FA7 1 0 1.09 2 A A H2 C2 ASN FA7 1 0 1.09 3 A A H2 C2 ASN FA7 1 0 1.09 4 A A H2 C2 ASN FA7 1 0 1.09 5 A A H2 C2 ASN FA7 1 0 1.09 6 A A H2 C2 ASN FA7 1 0 1.09 3 A A D4P GHP 6 7 148.22 1 A GHP 7 171.82 -137.60 1 A LEU 15 59.46 79.39 2 A GHP 7 176.66 -127.71 2 A LEU 15 62.31 79.46 3 A LEU 15 60.29 80.34 4 A GHP 7 174.95 -136.61 4 A LEU 15 62.18 80.09 5 A GHP 7 172.37 -131.17 5 A LEU 15 61.49 80.39 6 A GHP 7 179.97 -134.23 6 A LEU 15 60.62 79.99 Peptide antibiotic, NMR, 6 structures 1 N N 2 N N 3 N N covale 1.338 both A FA7 0 C C1 FA7 1_555 A ASN 1 A N ASN 1 1_555 covale 1.340 both A ASN 1 A C ASN 1 1_555 A AHB 2 A N AHB 2 1_555 covale 1.339 both A AHB 2 A C AHB 2 1_555 A GHP 3 A N GHP 3 1_555 covale 1.397 one A AHB 2 A OB AHB 2 1_555 A CHP 17 A C CHP 17 1_555 covale 1.339 both A GHP 3 A C GHP 3 1_555 A ORD 4 A N ORD 4 1_555 covale 1.339 both A ORD 4 A C ORD 4 1_555 A 2TL 5 A N 2TL 5 1_555 covale 1.339 both A 2TL 5 A C 2TL 5 1_555 A D4P 6 A N D4P 6 1_555 covale 1.351 both A D4P 6 A C D4P 6 1_555 A GHP 7 A N GHP 7 1_555 covale 1.344 both A GHP 7 A C GHP 7 1_555 A ALO 8 A N ALO 8 1_555 covale 1.340 both A ALO 8 A C ALO 8 1_555 A PHE 9 A N PHE 9 1_555 covale 1.343 both A PHE 9 A C PHE 9 1_555 A ORD 10 A N ORD 10 1_555 covale 1.342 both A ORD 10 A C ORD 10 1_555 A D4P 11 A N D4P 11 1_555 covale 1.343 both A D4P 11 A C D4P 11 1_555 A 2TL 12 A N 2TL 12 1_555 covale 1.451 both A D4P 11 A O4 D4P 11 1_555 B MAN 1 B C1 MAN 1_555 covale 1.341 both A 2TL 12 A C 2TL 12 1_555 A D4P 13 A N D4P 13 1_555 covale 1.349 both A D4P 13 A C D4P 13 1_555 A GLY 14 A N GLY 14 1_555 covale 1.338 both A LEU 15 A C LEU 15 1_555 A DAL 16 A N DAL 16 1_555 covale 1.346 both A DAL 16 A C DAL 16 1_555 A CHP 17 A N CHP 17 1_555 covale 1.450 both B MAN 1 B O2 MAN 1_555 B MAN 2 B C1 MAN 1_555 ANTIBIOTIC RAMOPLANIN, ANTIBIOTIC, INHIBITOR, GLYCOLIPODESPSIPEPTIDE NOR00844 NOR 1 NOR00844 1 17 1DSR 1 17 NOR00844 A 1 1 17 2 anti-parallel A GHP 3 A GHP 3 A D4P 6 A D4P 6 A D4P 11 A D4P 11 A D4P 13 A D4P 13 1 P 1