0.022036 0.012723 0.000000 0.000000 0.025445 0.000000 0.000000 0.000000 0.005707 0.00000 0.00000 0.00000 Narayana, S.V.L. Volanakis, J.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 45.380 45.380 175.210 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J.Biol.Chem. JBCHA3 0071 0021-9258 270 24399 24405 10.1074/jbc.270.41.24399 7592653 Crystal structure of a complement factor D mutant expressing enhanced catalytic activity. 1995 US J.Immunol. JOIMA3 0952 0022-1767 154 6073 Catalytic Role of a Surface Loop of the Complement Serine Protease Factor D 1995 US Biochemistry BICHAW 0033 0006-2960 33 14393 Mutational Analysis of the Substrate Binding Site of Human Complement Factor D 1994 UK J.Mol.Biol. JMOBAK 0070 0022-2836 235 695 Structure of Human Factor D. A Complement System Protein at 2.0 A Resolution 1994 UK J.Mol.Biol. JMOBAK 0070 0022-2836 219 1 Crystallization and Preliminary X-Ray Investigation of Factor D of Human Complement 1991 10.2210/pdb1dst/pdb pdb_00001dst 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 295 1 AREA DETECTOR SIEMENS M x-ray 1 1.5418 1.0 1.5418 24600.008 FACTOR D 3.4.21.46 S94Y, T214S, S215W 1 man polymer 18.015 water 61 nat water no no ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD YQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH DGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDSVLA ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD YQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH DGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDSVLA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Chinese hamster Cricetulus sample 9606 OVARY Homo sapiens 10029 Cricetulus griseus 2.12 42. 6.8 pH 6.8 database_2 pdbx_database_status struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Database references Other 1 0 1996-07-11 1 1 2008-03-24 1 2 2011-07-13 1 3 2021-11-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.process_site _struct_ref_seq_dif.details Y BNL 1995-09-13 REL REL HOH water HOH 250 2 HOH HOH 250 A HOH 251 2 HOH HOH 251 A HOH 252 2 HOH HOH 252 A HOH 253 2 HOH HOH 253 A HOH 254 2 HOH HOH 254 A HOH 255 2 HOH HOH 255 A HOH 256 2 HOH HOH 256 A HOH 257 2 HOH HOH 257 A HOH 258 2 HOH HOH 258 A HOH 259 2 HOH HOH 259 A HOH 260 2 HOH HOH 260 A HOH 261 2 HOH HOH 261 A HOH 262 2 HOH HOH 262 A HOH 263 2 HOH HOH 263 A HOH 264 2 HOH HOH 264 A HOH 265 2 HOH HOH 265 A HOH 266 2 HOH HOH 266 A HOH 267 2 HOH HOH 267 A HOH 268 2 HOH HOH 268 A HOH 269 2 HOH HOH 269 A HOH 270 2 HOH HOH 270 A HOH 271 2 HOH HOH 271 A HOH 272 2 HOH HOH 272 A HOH 273 2 HOH HOH 273 A HOH 274 2 HOH HOH 274 A HOH 275 2 HOH HOH 275 A HOH 276 2 HOH HOH 276 A HOH 277 2 HOH HOH 277 A HOH 278 2 HOH HOH 278 A HOH 279 2 HOH HOH 279 A HOH 280 2 HOH HOH 280 A HOH 281 2 HOH HOH 281 A HOH 282 2 HOH HOH 282 A HOH 283 2 HOH HOH 283 A HOH 284 2 HOH HOH 284 A HOH 285 2 HOH HOH 285 A HOH 286 2 HOH HOH 286 A HOH 287 2 HOH HOH 287 A HOH 288 2 HOH HOH 288 A HOH 289 2 HOH HOH 289 A HOH 290 2 HOH HOH 290 A HOH 291 2 HOH HOH 291 A HOH 292 2 HOH HOH 292 A HOH 293 2 HOH HOH 293 A HOH 294 2 HOH HOH 294 A HOH 295 2 HOH HOH 295 A HOH 296 2 HOH HOH 296 A HOH 297 2 HOH HOH 297 A HOH 298 2 HOH HOH 298 A HOH 299 2 HOH HOH 299 A HOH 300 2 HOH HOH 300 A HOH 301 2 HOH HOH 301 A HOH 302 2 HOH HOH 302 A HOH 303 2 HOH HOH 303 A HOH 304 2 HOH HOH 304 A HOH 305 2 HOH HOH 305 A HOH 306 2 HOH HOH 306 A HOH 307 2 HOH HOH 307 A HOH 308 2 HOH HOH 308 A HOH 309 2 HOH HOH 309 A HOH 310 2 HOH HOH 310 A ILE 16 n 1 ILE 16 A LEU 17 n 2 LEU 17 A GLY 18 n 3 GLY 18 A GLY 19 n 4 GLY 19 A ARG 20 n 5 ARG 20 A GLU 21 n 6 GLU 21 A ALA 22 n 7 ALA 22 A GLU 23 n 8 GLU 23 A ALA 24 n 9 ALA 24 A HIS 25 n 10 HIS 25 A ALA 26 n 11 ALA 26 A ARG 27 n 12 ARG 27 A PRO 28 n 13 PRO 28 A TYR 29 n 14 TYR 29 A MET 30 n 15 MET 30 A ALA 31 n 16 ALA 31 A SER 32 n 17 SER 32 A VAL 33 n 18 VAL 33 A GLN 34 n 19 GLN 34 A LEU 35 n 20 LEU 35 A ASN 36 n 21 ASN 36 A GLY 38 n 22 GLY 38 A ALA 39 n 23 ALA 39 A HIS 40 n 24 HIS 40 A LEU 41 n 25 LEU 41 A CYS 42 n 26 CYS 42 A GLY 43 n 27 GLY 43 A GLY 44 n 28 GLY 44 A VAL 45 n 29 VAL 45 A LEU 46 n 30 LEU 46 A VAL 47 n 31 VAL 47 A ALA 48 n 32 ALA 48 A GLU 49 n 33 GLU 49 A GLN 50 n 34 GLN 50 A TRP 51 n 35 TRP 51 A VAL 52 n 36 VAL 52 A LEU 53 n 37 LEU 53 A SER 54 n 38 SER 54 A ALA 55 n 39 ALA 55 A ALA 56 n 40 ALA 56 A HIS 57 n 41 HIS 57 A CYS 58 n 42 CYS 58 A LEU 59 n 43 LEU 59 A GLU 60 n 44 GLU 60 A ASP 61 n 45 ASP 61 A ALA 61 n 46 A ALA 61 A ALA 61 n 47 B ALA 61 A ASP 61 n 48 C ASP 61 A GLY 62 n 49 GLY 62 A LYS 63 n 50 LYS 63 A VAL 64 n 51 VAL 64 A GLN 65 n 52 GLN 65 A VAL 66 n 53 VAL 66 A LEU 67 n 54 LEU 67 A LEU 68 n 55 LEU 68 A GLY 69 n 56 GLY 69 A ALA 70 n 57 ALA 70 A HIS 71 n 58 HIS 71 A SER 72 n 59 SER 72 A LEU 73 n 60 LEU 73 A SER 74 n 61 SER 74 A GLN 75 n 62 GLN 75 A PRO 76 n 63 PRO 76 A GLU 77 n 64 GLU 77 A PRO 78 n 65 PRO 78 A SER 79 n 66 SER 79 A LYS 80 n 67 LYS 80 A ARG 81 n 68 ARG 81 A LEU 82 n 69 LEU 82 A TYR 83 n 70 TYR 83 A ASP 84 n 71 ASP 84 A VAL 85 n 72 VAL 85 A LEU 86 n 73 LEU 86 A ARG 87 n 74 ARG 87 A ALA 88 n 75 ALA 88 A VAL 89 n 76 VAL 89 A PRO 90 n 77 PRO 90 A HIS 91 n 78 HIS 91 A PRO 92 n 79 PRO 92 A ASP 93 n 80 ASP 93 A TYR 94 n 81 TYR 94 A GLN 95 n 82 GLN 95 A PRO 96 n 83 PRO 96 A ASP 97 n 84 ASP 97 A THR 98 n 85 THR 98 A ILE 99 n 86 ILE 99 A ASP 100 n 87 ASP 100 A HIS 101 n 88 HIS 101 A ASP 102 n 89 ASP 102 A LEU 103 n 90 LEU 103 A LEU 104 n 91 LEU 104 A LEU 105 n 92 LEU 105 A LEU 106 n 93 LEU 106 A GLN 107 n 94 GLN 107 A LEU 108 n 95 LEU 108 A SER 109 n 96 SER 109 A GLU 110 n 97 GLU 110 A LYS 111 n 98 LYS 111 A ALA 112 n 99 ALA 112 A THR 113 n 100 THR 113 A LEU 114 n 101 LEU 114 A GLY 115 n 102 GLY 115 A PRO 118 n 103 PRO 118 A ALA 119 n 104 ALA 119 A VAL 120 n 105 VAL 120 A ARG 121 n 106 ARG 121 A PRO 122 n 107 PRO 122 A LEU 123 n 108 LEU 123 A PRO 124 n 109 PRO 124 A TRP 124 n 110 A TRP 124 A GLN 125 n 111 GLN 125 A ARG 126 n 112 ARG 126 A VAL 127 n 113 VAL 127 A ASP 128 n 114 ASP 128 A ARG 129 n 115 ARG 129 A ASP 129 n 116 A ASP 129 A VAL 130 n 117 VAL 130 A ALA 131 n 118 ALA 131 A PRO 132 n 119 PRO 132 A GLY 133 n 120 GLY 133 A THR 134 n 121 THR 134 A LEU 135 n 122 LEU 135 A CYS 136 n 123 CYS 136 A ASP 137 n 124 ASP 137 A VAL 138 n 125 VAL 138 A ALA 139 n 126 ALA 139 A GLY 140 n 127 GLY 140 A TRP 141 n 128 TRP 141 A GLY 142 n 129 GLY 142 A ILE 143 n 130 ILE 143 A VAL 144 n 131 VAL 144 A ASN 145 n 132 ASN 145 A HIS 146 n 133 HIS 146 A ALA 147 n 134 ALA 147 A GLY 149 n 135 GLY 149 A ARG 150 n 136 ARG 150 A ARG 151 n 137 ARG 151 A PRO 152 n 138 PRO 152 A ASP 153 n 139 ASP 153 A SER 154 n 140 SER 154 A LEU 155 n 141 LEU 155 A GLN 156 n 142 GLN 156 A HIS 157 n 143 HIS 157 A VAL 158 n 144 VAL 158 A LEU 159 n 145 LEU 159 A LEU 160 n 146 LEU 160 A PRO 161 n 147 PRO 161 A VAL 162 n 148 VAL 162 A LEU 163 n 149 LEU 163 A ASP 164 n 150 ASP 164 A ARG 165 n 151 ARG 165 A ALA 166 n 152 ALA 166 A THR 167 n 153 THR 167 A CYS 168 n 154 CYS 168 A ASN 169 n 155 ASN 169 A ARG 170 n 156 ARG 170 A ARG 170 n 157 A ARG 170 A THR 170 n 158 B THR 170 A HIS 171 n 159 HIS 171 A HIS 172 n 160 HIS 172 A ASP 173 n 161 ASP 173 A GLY 174 n 162 GLY 174 A ALA 175 n 163 ALA 175 A ILE 176 n 164 ILE 176 A THR 177 n 165 THR 177 A GLU 178 n 166 GLU 178 A ARG 179 n 167 ARG 179 A LEU 180 n 168 LEU 180 A MET 181 n 169 MET 181 A CYS 182 n 170 CYS 182 A ALA 183 n 171 ALA 183 A GLU 184 n 172 GLU 184 A SER 185 n 173 SER 185 A ASN 186 n 174 ASN 186 A ARG 187 n 175 ARG 187 A ARG 188 n 176 ARG 188 A ASP 189 n 177 ASP 189 A SER 190 n 178 SER 190 A CYS 191 n 179 CYS 191 A LYS 192 n 180 LYS 192 A GLY 193 n 181 GLY 193 A ASP 194 n 182 ASP 194 A SER 195 n 183 SER 195 A GLY 196 n 184 GLY 196 A GLY 197 n 185 GLY 197 A PRO 198 n 186 PRO 198 A LEU 199 n 187 LEU 199 A VAL 200 n 188 VAL 200 A CYS 201 n 189 CYS 201 A GLY 202 n 190 GLY 202 A GLY 207 n 191 GLY 207 A VAL 208 n 192 VAL 208 A LEU 209 n 193 LEU 209 A GLU 210 n 194 GLU 210 A GLY 211 n 195 GLY 211 A VAL 212 n 196 VAL 212 A VAL 213 n 197 VAL 213 A SER 214 n 198 SER 214 A TRP 215 n 199 TRP 215 A GLY 216 n 200 GLY 216 A SER 217 n 201 SER 217 A ARG 218 n 202 ARG 218 A VAL 219 n 203 VAL 219 A CYS 220 n 204 CYS 220 A GLY 221 n 205 GLY 221 A ASN 222 n 206 ASN 222 A ARG 223 n 207 ARG 223 A LYS 223 n 208 A LYS 223 A LYS 224 n 209 LYS 224 A PRO 225 n 210 PRO 225 A GLY 226 n 211 GLY 226 A ILE 227 n 212 ILE 227 A TYR 228 n 213 TYR 228 A THR 229 n 214 THR 229 A ARG 230 n 215 ARG 230 A VAL 231 n 216 VAL 231 A ALA 232 n 217 ALA 232 A SER 233 n 218 SER 233 A TYR 234 n 219 TYR 234 A ALA 235 n 220 ALA 235 A ALA 236 n 221 ALA 236 A TRP 237 n 222 TRP 237 A ILE 238 n 223 ILE 238 A ASP 239 n 224 ASP 239 A SER 240 n 225 SER 240 A VAL 241 n 226 VAL 241 A LEU 242 n 227 LEU 242 A ALA 243 n 228 ALA 243 A 0.198 author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 81 A O ARG 68 A N LEU 68 A N LEU 55 A O GLN 65 A O GLN 52 A N GLN 34 A N GLN 19 A O ALA 31 A O ALA 16 A N GLY 44 A N GLY 28 A O VAL 45 A O VAL 29 A N LEU 53 A N LEU 37 A O VAL 52 A O VAL 36 A N LEU 106 A N LEU 93 A O LEU 105 A O LEU 92 A N VAL 89 A N VAL 76 A O CYS 136 A O CYS 123 A N LEU 160 A N LEU 146 A O MET 181 A O MET 169 A N TYR 228 A N TYR 213 A O THR 229 A O THR 214 A N VAL 212 A N VAL 196 A O VAL 208 A O VAL 192 A N CYS 201 A N CYS 189 1 A ALA 175 -19.76 1 A ARG 20 0.241 SIDE CHAIN 1 A ARG 81 0.141 SIDE CHAIN 1 A ARG 165 0.243 SIDE CHAIN 1 A ARG 188 0.172 SIDE CHAIN 1 A A C N HIS HIS 171 172 1.16 1 8.87 1.10 114.20 123.07 A A A CA CB SG CYS CYS CYS 168 168 168 N 1 3.71 0.50 120.30 124.01 A A A NE CZ NH2 ARG ARG ARG 170 170 170 N A A A 1 3.75 0.50 120.30 124.05 A A A NE CZ NH2 ARG ARG ARG 170 170 170 N 1 19.18 1.90 111.00 130.18 A A A CA CB CG1 ILE ILE ILE 176 176 176 N 1 -12.89 2.00 110.90 98.01 A A A CA CB CG2 ILE ILE ILE 176 176 176 N 1 3.30 0.50 120.30 123.60 A A A NE CZ NH2 ARG ARG ARG 179 179 179 N 1 -10.85 1.80 114.00 103.15 A A A CA CB SG CYS CYS CYS 182 182 182 N 1 3.42 0.50 120.30 123.72 A A A NE CZ NH2 ARG ARG ARG 187 187 187 N 1 3.56 0.50 120.30 123.86 A A A NE CZ NH2 ARG ARG ARG 188 188 188 N 1 3.23 0.50 120.30 123.53 A A A NE CZ NH2 ARG ARG ARG 218 218 218 N 1 3.67 0.50 120.30 123.97 A A A NE CZ NH1 ARG ARG ARG 223 223 223 N 1 A A C N HIS HIS 171 172 -0.179 0.023 1.336 1.157 Y 1 A A C N ALA ILE 175 176 0.149 0.023 1.336 1.485 Y A 1 A ALA 61 -104.11 72.63 1 A HIS 71 -121.44 -65.37 1 A ASP 97 64.50 63.17 B 1 A THR 170 -62.97 -88.06 1 A HIS 172 90.58 103.08 1 A ASP 173 83.15 -56.37 1 A ALA 175 16.90 145.62 1 A GLU 184 -49.32 151.77 1 A SER 214 -90.20 -157.23 15.2 THERE IS NO DENSITY FOR THE LOOP 171 TO 175, HENCE THEIR PSI, PHI VALUES ARE OUT OF THE ALLOWED REGIONS IN THE RAMACHANDRAN PLOT. 0.213 2.0 7.5 13311 1 1.5 0.24 2.0 7.5 57 1841 0 0 1784 0.020 0.025 0.035 0.040 0.056 0.065 1.01 1.50 1.54 2.00 1.65 2.00 2.10 2.50 2.5 3.5 0.034 0.050 0.200 0.400 0.191 0.400 0.133 0.400 2.4 21.3 15.0 16.5 20.0 2.0 20.0 1DST 14652 1.5 0.076 1 6 94. data collection XENGEN data reduction XENGEN refinement PROLSQ data scaling XENGEN MUTANT OF FACTOR D WITH ENHANCED CATALYTIC ACTIVITY 1 N N 2 N N A ALA 56 A ALA 40 HELX_P A ASP 61 A ASP 45 5 1 6 A ARG 165 A ARG 151 HELX_P A THR 170 A THR 158 1 2 8 B A VAL 231 A VAL 216 HELX_P A VAL 241 A VAL 226 5 3 11 disulf 2.022 A CYS 42 A SG CYS 26 1_555 A CYS 58 A SG CYS 42 1_555 disulf 2.026 A CYS 136 A SG CYS 123 1_555 A CYS 201 A SG CYS 189 1_555 disulf 2.022 A CYS 168 A SG CYS 154 1_555 A CYS 182 A SG CYS 170 1_555 disulf 1.950 A CYS 191 A SG CYS 179 1_555 A CYS 220 A SG CYS 204 1_555 HYDROLASE (SERINE PROTEASE) COMPLEMENT ACTIVATING ENZYME, HYDROLASE, SERINE PROTEASE, FACTOR D, HYDROLASE (SERINE PROTEASE) CFAD_HUMAN UNP 1 1 P00746 MHSSVYFAVLVLLGAAACAARPRGRILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLL GAHSLSQPEPSKRLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAG RRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTR VASYAAWIDSVLA 26 253 1DST 16 243 P00746 A 1 1 228 1 SER engineered mutation TYR 94 1DST A P00746 UNP 106 81 1 THR engineered mutation SER 214 1DST A P00746 UNP 223 198 1 SER engineered mutation TRP 215 1DST A P00746 UNP 224 199 7 2 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 81 A ARG 68 A ASP 84 A ASP 71 A VAL 64 A VAL 51 A LEU 68 A LEU 55 A MET 30 A MET 15 A LEU 35 A LEU 20 A ALA 39 A ALA 23 A ALA 48 A ALA 32 A TRP 51 A TRP 35 A SER 54 A SER 38 A LEU 104 A LEU 91 A LEU 108 A LEU 95 A VAL 85 A VAL 72 A PRO 90 A PRO 77 A LEU 135 A LEU 122 A GLY 140 A GLY 127 A GLN 156 A GLN 142 A PRO 161 A PRO 147 A LEU 180 A LEU 168 A ALA 183 A ALA 171 A GLY 226 A GLY 211 A ARG 230 A ARG 215 A VAL 208 A VAL 192 A VAL 213 A VAL 197 A PRO 198 A PRO 186 A CYS 201 A CYS 189 152 P 31 2 1