1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Klein, D.J. Johnson, P.E. Zollars, E.S. De Guzman, R.N. Summers, M.F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer US Biochemistry BICHAW 0033 0006-2960 39 1604 1612 10.1021/bi9922493 10677209 The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle. 2000 10.2210/pdb1dsv/pdb pdb_00001dsv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 3522.127 NUCLEIC ACID BINDING PROTEIN P14 C-TERMINAL ZINC FINGER OF NUCLEOCAPSID PROTEIN 1 man polymer 65.409 ZINC ION 1 syn non-polymer no no PPGLCPRCKKGYHWKSECKSKFDKDGNPLPP PPGLCPRCKKGYHWKSECKSKFDKDGNPLPP A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Betaretrovirus Escherichia sample 11757 Mouse mammary tumor virus 562 Escherichia coli BL21(DE3)PLYSE PLASMID PET-3D database_2 pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_conn_angle pdbx_struct_oper_list struct_conn struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2000-01-28 1 1 2008-04-27 1 2 2011-07-13 1 3 2022-02-16 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_spectrometer.model _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id N-terminal zinc finger of the MMTV nucleocapsid protein RCSB Y RCSB 2000-01-08 REL REL ZN ZINC ION target function 100 20 ~50 mM 7.0 ambient 25 K data was collected on the intact nucleocapsid protein but the structures of the N- and C-terminal zinc fingers were calculated independently. These two domains do not interact with each other 1 lowest target function 1 mM unlabelled MMTV Nc, 25 mM acetate (d3), pH 7.0, 20 mM NaCl, 0.1 mM ZnCl2, 0.1 mM BME 90% H2O/10% D2O guntert refinement DYANA 1.5 Delaglio processing NMRPipe 1.7 Johnson data analysis NMRView 3 600 Bruker AVANCE 600 GE PSG ZN 71 2 ZN ZN 171 A PRO 54 n 1 PRO 54 A PRO 55 n 2 PRO 55 A GLY 56 n 3 GLY 56 A LEU 57 n 4 LEU 57 A CYS 58 n 5 CYS 58 A PRO 59 n 6 PRO 59 A ARG 60 n 7 ARG 60 A CYS 61 n 8 CYS 61 A LYS 62 n 9 LYS 62 A LYS 63 n 10 LYS 63 A GLY 64 n 11 GLY 64 A TYR 65 n 12 TYR 65 A HIS 66 n 13 HIS 66 A TRP 67 n 14 TRP 67 A LYS 68 n 15 LYS 68 A SER 69 n 16 SER 69 A GLU 70 n 17 GLU 70 A CYS 71 n 18 CYS 71 A LYS 72 n 19 LYS 72 A SER 73 n 20 SER 73 A LYS 74 n 21 LYS 74 A PHE 75 n 22 PHE 75 A ASP 76 n 23 ASP 76 A LYS 77 n 24 LYS 77 A ASP 78 n 25 ASP 78 A GLY 79 n 26 GLY 79 A ASN 80 n 27 ASN 80 A PRO 81 n 28 PRO 81 A LEU 82 n 29 LEU 82 A PRO 83 n 30 PRO 83 A PRO 84 n 31 PRO 84 A author_defined_assembly 1 monomeric A CYS 58 A SG CYS 5 1_555 A ZN 171 B ZN ZN 1_555 A CYS 61 A SG CYS 8 1_555 96.1 A CYS 58 A SG CYS 5 1_555 A ZN 171 B ZN ZN 1_555 A HIS 66 A NE2 HIS 13 1_555 94.9 A CYS 61 A SG CYS 8 1_555 A ZN 171 B ZN ZN 1_555 A HIS 66 A NE2 HIS 13 1_555 109.5 A CYS 58 A SG CYS 5 1_555 A ZN 171 B ZN ZN 1_555 A CYS 71 A SG CYS 18 1_555 130.0 A CYS 61 A SG CYS 8 1_555 A ZN 171 B ZN ZN 1_555 A CYS 71 A SG CYS 18 1_555 122.8 A HIS 66 A NE2 HIS 13 1_555 A ZN 171 B ZN ZN 1_555 A CYS 71 A SG CYS 18 1_555 99.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ASP 76 A N ASP 23 A O ASN 80 A O ASN 27 1 A CYS 58 -43.60 102.53 1 A HIS 66 178.90 167.60 1 A LYS 77 -37.25 151.63 1 A LEU 82 -39.16 99.66 2 A CYS 58 -45.97 103.99 2 A HIS 66 179.66 164.12 2 A LYS 77 -37.32 151.53 2 A LEU 82 -39.04 99.55 3 A CYS 58 -42.94 101.96 3 A HIS 66 179.30 173.06 3 A LYS 77 -37.28 150.07 3 A LEU 82 -38.92 99.48 4 A LEU 57 -53.74 108.20 4 A CYS 58 -41.94 101.41 4 A HIS 66 175.79 169.99 4 A LYS 77 -37.13 150.54 4 A LEU 82 -38.92 99.47 5 A PRO 55 -75.02 -72.77 5 A CYS 58 -43.41 102.46 5 A HIS 66 177.89 174.36 5 A LYS 77 -36.89 153.80 6 A CYS 58 -49.74 105.98 6 A ARG 60 -90.97 -66.90 6 A LYS 77 -36.78 149.90 6 A LEU 82 -38.57 99.23 7 A CYS 58 -42.67 101.92 7 A HIS 66 177.17 171.08 7 A LYS 77 -37.08 150.68 7 A LEU 82 -38.99 99.52 8 A CYS 58 -47.45 104.94 8 A ARG 60 -90.28 -67.54 8 A LYS 77 -37.10 151.25 8 A LEU 82 -38.77 99.41 9 A CYS 58 -47.21 104.60 9 A ARG 60 -90.64 -67.27 9 A SER 73 -60.25 -178.77 9 A LYS 77 -36.27 150.32 9 A LEU 82 -40.15 159.18 10 A CYS 58 -41.60 100.96 10 A HIS 66 176.50 168.99 10 A LYS 77 -36.73 150.08 10 A LEU 82 -40.11 158.86 11 A PRO 55 -75.01 -168.97 11 A CYS 58 -50.07 106.44 11 A ARG 60 -90.88 -67.96 11 A LYS 77 -36.33 151.98 12 A LEU 57 -49.23 109.66 12 A CYS 58 -45.99 103.96 12 A LYS 63 -140.54 15.33 12 A HIS 66 176.42 171.72 12 A LYS 77 -37.13 150.88 12 A LEU 82 -39.23 99.67 13 A CYS 58 -44.47 103.06 13 A LYS 62 72.06 48.22 13 A LYS 63 -143.22 17.37 13 A HIS 66 176.28 167.50 13 A LYS 77 -37.38 151.14 13 A LEU 82 -39.54 99.91 14 A LYS 77 -36.90 150.76 14 A LEU 82 -38.74 99.39 15 A PRO 55 -75.00 -163.46 15 A CYS 58 -49.30 105.65 15 A SER 73 -54.87 -178.87 15 A LYS 77 -36.59 150.11 15 A LEU 82 -39.77 158.29 16 A ARG 60 -91.45 -67.22 16 A LYS 77 -37.03 151.58 16 A LEU 82 -38.78 99.31 17 A PRO 55 -74.98 -82.83 17 A LYS 77 -36.88 150.66 17 A LEU 82 -38.77 99.34 18 A PRO 55 -74.95 -164.75 18 A LEU 57 -51.99 107.00 18 A CYS 58 -41.26 100.45 18 A HIS 66 176.81 171.15 18 A LYS 77 -37.30 150.27 18 A LEU 82 -39.79 151.18 19 A ARG 60 -98.66 -69.61 19 A LYS 77 -37.05 151.47 19 A LEU 82 -38.83 99.41 20 A ARG 60 -94.22 -65.76 20 A LYS 77 -37.09 149.67 20 A LEU 82 -40.38 159.42 STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (C-TERMINAL ZINC FINGER) 1 N N 2 N N A LYS 77 A LYS 24 HELX_P A GLY 79 A GLY 26 5 1 3 metalc 2.389 A CYS 58 A SG CYS 5 1_555 A ZN 171 B ZN ZN 1_555 metalc 2.361 A CYS 61 A SG CYS 8 1_555 A ZN 171 B ZN ZN 1_555 metalc 2.073 A HIS 66 A NE2 HIS 13 1_555 A ZN 171 B ZN ZN 1_555 metalc 2.303 A CYS 71 A SG CYS 18 1_555 A ZN 171 B ZN ZN 1_555 VIRAL PROTEIN CCHC type zinc finger, VIRUS/VIRAL PROTEIN, Viral protein GAG_MMTVC UNP 1 P11284 550 580 1DSV 54 84 P11284 A 1 1 31 2 anti-parallel A PHE 75 A PHE 22 A ASP 76 A ASP 23 A ASN 80 A ASN 27 A PRO 81 A PRO 28 BINDING SITE FOR RESIDUE ZN A 171 A ZN 171 Software 4 A CYS 58 A CYS 5 4 1_555 A CYS 61 A CYS 8 4 1_555 A HIS 66 A HIS 13 4 1_555 A CYS 71 A CYS 18 4 1_555 1 P 1