1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Klein, D.J.
Johnson, P.E.
Zollars, E.S.
De Guzman, R.N.
Summers, M.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
90.00
90.00
90.00
1.000
1.000
1.000
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
Biochemistry
BICHAW
0033
0006-2960
39
1604
1612
10.1021/bi9922493
10677209
The NMR structure of the nucleocapsid protein from the mouse mammary tumor virus reveals unusual folding of the C-terminal zinc knuckle.
2000
10.2210/pdb1dsv/pdb
pdb_00001dsv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
3522.127
NUCLEIC ACID BINDING PROTEIN P14
C-TERMINAL ZINC FINGER OF NUCLEOCAPSID PROTEIN
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
no
no
PPGLCPRCKKGYHWKSECKSKFDKDGNPLPP
PPGLCPRCKKGYHWKSECKSKFDKDGNPLPP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Betaretrovirus
Escherichia
sample
11757
Mouse mammary tumor virus
562
Escherichia coli
BL21(DE3)PLYSE
PLASMID
PET-3D
database_2
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_conn_angle
pdbx_struct_oper_list
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2000-01-28
1
1
2008-04-27
1
2
2011-07-13
1
3
2022-02-16
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_spectrometer.model
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
N-terminal zinc finger of the MMTV nucleocapsid protein
RCSB
Y
RCSB
2000-01-08
REL
REL
ZN
ZINC ION
target function
100
20
~50 mM
7.0
ambient
25
K
data was collected on the intact nucleocapsid protein but the structures of the N- and C-terminal zinc fingers were calculated independently. These two domains do not interact with each other
1
lowest target function
1 mM unlabelled MMTV Nc, 25 mM acetate (d3), pH 7.0, 20 mM NaCl, 0.1 mM ZnCl2, 0.1 mM BME
90% H2O/10% D2O
guntert
refinement
DYANA
1.5
Delaglio
processing
NMRPipe
1.7
Johnson
data analysis
NMRView
3
600
Bruker
AVANCE
600
GE
PSG
ZN
71
2
ZN
ZN
171
A
PRO
54
n
1
PRO
54
A
PRO
55
n
2
PRO
55
A
GLY
56
n
3
GLY
56
A
LEU
57
n
4
LEU
57
A
CYS
58
n
5
CYS
58
A
PRO
59
n
6
PRO
59
A
ARG
60
n
7
ARG
60
A
CYS
61
n
8
CYS
61
A
LYS
62
n
9
LYS
62
A
LYS
63
n
10
LYS
63
A
GLY
64
n
11
GLY
64
A
TYR
65
n
12
TYR
65
A
HIS
66
n
13
HIS
66
A
TRP
67
n
14
TRP
67
A
LYS
68
n
15
LYS
68
A
SER
69
n
16
SER
69
A
GLU
70
n
17
GLU
70
A
CYS
71
n
18
CYS
71
A
LYS
72
n
19
LYS
72
A
SER
73
n
20
SER
73
A
LYS
74
n
21
LYS
74
A
PHE
75
n
22
PHE
75
A
ASP
76
n
23
ASP
76
A
LYS
77
n
24
LYS
77
A
ASP
78
n
25
ASP
78
A
GLY
79
n
26
GLY
79
A
ASN
80
n
27
ASN
80
A
PRO
81
n
28
PRO
81
A
LEU
82
n
29
LEU
82
A
PRO
83
n
30
PRO
83
A
PRO
84
n
31
PRO
84
A
author_defined_assembly
1
monomeric
A
CYS
58
A
SG
CYS
5
1_555
A
ZN
171
B
ZN
ZN
1_555
A
CYS
61
A
SG
CYS
8
1_555
96.1
A
CYS
58
A
SG
CYS
5
1_555
A
ZN
171
B
ZN
ZN
1_555
A
HIS
66
A
NE2
HIS
13
1_555
94.9
A
CYS
61
A
SG
CYS
8
1_555
A
ZN
171
B
ZN
ZN
1_555
A
HIS
66
A
NE2
HIS
13
1_555
109.5
A
CYS
58
A
SG
CYS
5
1_555
A
ZN
171
B
ZN
ZN
1_555
A
CYS
71
A
SG
CYS
18
1_555
130.0
A
CYS
61
A
SG
CYS
8
1_555
A
ZN
171
B
ZN
ZN
1_555
A
CYS
71
A
SG
CYS
18
1_555
122.8
A
HIS
66
A
NE2
HIS
13
1_555
A
ZN
171
B
ZN
ZN
1_555
A
CYS
71
A
SG
CYS
18
1_555
99.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASP
76
A
N
ASP
23
A
O
ASN
80
A
O
ASN
27
1
A
CYS
58
-43.60
102.53
1
A
HIS
66
178.90
167.60
1
A
LYS
77
-37.25
151.63
1
A
LEU
82
-39.16
99.66
2
A
CYS
58
-45.97
103.99
2
A
HIS
66
179.66
164.12
2
A
LYS
77
-37.32
151.53
2
A
LEU
82
-39.04
99.55
3
A
CYS
58
-42.94
101.96
3
A
HIS
66
179.30
173.06
3
A
LYS
77
-37.28
150.07
3
A
LEU
82
-38.92
99.48
4
A
LEU
57
-53.74
108.20
4
A
CYS
58
-41.94
101.41
4
A
HIS
66
175.79
169.99
4
A
LYS
77
-37.13
150.54
4
A
LEU
82
-38.92
99.47
5
A
PRO
55
-75.02
-72.77
5
A
CYS
58
-43.41
102.46
5
A
HIS
66
177.89
174.36
5
A
LYS
77
-36.89
153.80
6
A
CYS
58
-49.74
105.98
6
A
ARG
60
-90.97
-66.90
6
A
LYS
77
-36.78
149.90
6
A
LEU
82
-38.57
99.23
7
A
CYS
58
-42.67
101.92
7
A
HIS
66
177.17
171.08
7
A
LYS
77
-37.08
150.68
7
A
LEU
82
-38.99
99.52
8
A
CYS
58
-47.45
104.94
8
A
ARG
60
-90.28
-67.54
8
A
LYS
77
-37.10
151.25
8
A
LEU
82
-38.77
99.41
9
A
CYS
58
-47.21
104.60
9
A
ARG
60
-90.64
-67.27
9
A
SER
73
-60.25
-178.77
9
A
LYS
77
-36.27
150.32
9
A
LEU
82
-40.15
159.18
10
A
CYS
58
-41.60
100.96
10
A
HIS
66
176.50
168.99
10
A
LYS
77
-36.73
150.08
10
A
LEU
82
-40.11
158.86
11
A
PRO
55
-75.01
-168.97
11
A
CYS
58
-50.07
106.44
11
A
ARG
60
-90.88
-67.96
11
A
LYS
77
-36.33
151.98
12
A
LEU
57
-49.23
109.66
12
A
CYS
58
-45.99
103.96
12
A
LYS
63
-140.54
15.33
12
A
HIS
66
176.42
171.72
12
A
LYS
77
-37.13
150.88
12
A
LEU
82
-39.23
99.67
13
A
CYS
58
-44.47
103.06
13
A
LYS
62
72.06
48.22
13
A
LYS
63
-143.22
17.37
13
A
HIS
66
176.28
167.50
13
A
LYS
77
-37.38
151.14
13
A
LEU
82
-39.54
99.91
14
A
LYS
77
-36.90
150.76
14
A
LEU
82
-38.74
99.39
15
A
PRO
55
-75.00
-163.46
15
A
CYS
58
-49.30
105.65
15
A
SER
73
-54.87
-178.87
15
A
LYS
77
-36.59
150.11
15
A
LEU
82
-39.77
158.29
16
A
ARG
60
-91.45
-67.22
16
A
LYS
77
-37.03
151.58
16
A
LEU
82
-38.78
99.31
17
A
PRO
55
-74.98
-82.83
17
A
LYS
77
-36.88
150.66
17
A
LEU
82
-38.77
99.34
18
A
PRO
55
-74.95
-164.75
18
A
LEU
57
-51.99
107.00
18
A
CYS
58
-41.26
100.45
18
A
HIS
66
176.81
171.15
18
A
LYS
77
-37.30
150.27
18
A
LEU
82
-39.79
151.18
19
A
ARG
60
-98.66
-69.61
19
A
LYS
77
-37.05
151.47
19
A
LEU
82
-38.83
99.41
20
A
ARG
60
-94.22
-65.76
20
A
LYS
77
-37.09
149.67
20
A
LEU
82
-40.38
159.42
STRUCTURE OF THE MMTV NUCLEOCAPSID PROTEIN (C-TERMINAL ZINC FINGER)
1
N
N
2
N
N
A
LYS
77
A
LYS
24
HELX_P
A
GLY
79
A
GLY
26
5
1
3
metalc
2.389
A
CYS
58
A
SG
CYS
5
1_555
A
ZN
171
B
ZN
ZN
1_555
metalc
2.361
A
CYS
61
A
SG
CYS
8
1_555
A
ZN
171
B
ZN
ZN
1_555
metalc
2.073
A
HIS
66
A
NE2
HIS
13
1_555
A
ZN
171
B
ZN
ZN
1_555
metalc
2.303
A
CYS
71
A
SG
CYS
18
1_555
A
ZN
171
B
ZN
ZN
1_555
VIRAL PROTEIN
CCHC type zinc finger, VIRUS/VIRAL PROTEIN, Viral protein
GAG_MMTVC
UNP
1
P11284
550
580
1DSV
54
84
P11284
A
1
1
31
2
anti-parallel
A
PHE
75
A
PHE
22
A
ASP
76
A
ASP
23
A
ASN
80
A
ASN
27
A
PRO
81
A
PRO
28
BINDING SITE FOR RESIDUE ZN A 171
A
ZN
171
Software
4
A
CYS
58
A
CYS
5
4
1_555
A
CYS
61
A
CYS
8
4
1_555
A
HIS
66
A
HIS
13
4
1_555
A
CYS
71
A
CYS
18
4
1_555
1
P 1