0.011507 0.006644 0.000000 0.000000 0.013288 0.000000 0.000000 0.000000 0.031397 0.000000 0.000000 0.000000 Fee, J.A. Chen, Y. Hill, M.J. Gomez-Moran, E. Loehr, T. Ai, J. Thony-Meyer, L. Williams, P.A. Stura, E. Sridhar, V. McRee, D.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 86.900 86.900 31.850 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C34 H34 Fe N4 O4 618.503 HEME C non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Protein Sci. PRCIEI 0795 0961-8368 9 2074 2084 11152119 Integrity of thermus thermophilus cytochrome c552 synthesized by Escherichia coli cells expressing the host-specific cytochrome c maturation genes, ccmABCDEFGH: biochemical, spectral, and structural characterization of the recombinant protein. 2000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 IMAGE PLATE 1999-11-14 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.08 1.0 BL7-1 SSRL 1.08 SYNCHROTRON SSRL BEAMLINE BL7-1 13995.368 CYTOCHROME C552 1 man polymer 618.503 HEME C 1 syn non-polymer 18.015 water 71 nat water no no DGAKIYAQCAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQLKDEEIAA VLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKKLGLK DGAKIYAQCAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQLKDEEIAA VLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKKLGLK A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermus Thermus thermophilus HB8 Escherichia sample 300852 Thermus thermophilus 562 Escherichia coli 1 2.48 50.40 VAPOR DIFFUSION, SITTING DROP 6.3 36% MPEG 5K (w/v), 0.2M Im-mat 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 24K 297.0 exptl_crystal_grow atom_site atom_site_anisotrop chem_comp entity pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Source and taxonomy Version format compliance Experimental preparation Atomic model Data collection Derived calculations Non-polymer description Structure summary 1 0 2000-02-18 1 1 2008-04-27 1 2 2011-07-13 1 3 2018-01-31 2 0 2021-03-03 _exptl_crystal_grow.temp _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _atom_site_anisotrop.id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_label_comp_id _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.name _chem_comp.pdbx_synonyms _entity.formula_weight _entity.pdbx_description _pdbx_entity_nonpoly.comp_id _pdbx_entity_nonpoly.name _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2000-01-10 REL REL HEC HEME C HOH water HEM 200 2 HEC HEC 200 A HOH 2001 3 HOH HOH 2001 A HOH 2002 3 HOH HOH 2002 A HOH 2003 3 HOH HOH 2003 A HOH 2004 3 HOH HOH 2004 A HOH 2005 3 HOH HOH 2005 A HOH 2006 3 HOH HOH 2006 A HOH 2007 3 HOH HOH 2007 A HOH 2008 3 HOH HOH 2008 A HOH 2009 3 HOH HOH 2009 A HOH 2010 3 HOH HOH 2010 A HOH 2011 3 HOH HOH 2011 A HOH 2012 3 HOH HOH 2012 A HOH 2013 3 HOH HOH 2013 A HOH 2014 3 HOH HOH 2014 A HOH 2015 3 HOH HOH 2015 A HOH 2016 3 HOH HOH 2016 A HOH 2017 3 HOH HOH 2017 A HOH 2018 3 HOH HOH 2018 A HOH 2019 3 HOH HOH 2019 A HOH 2020 3 HOH HOH 2020 A HOH 2021 3 HOH HOH 2021 A HOH 2022 3 HOH HOH 2022 A HOH 2023 3 HOH HOH 2023 A HOH 2024 3 HOH HOH 2024 A HOH 2025 3 HOH HOH 2025 A HOH 2026 3 HOH HOH 2026 A HOH 2027 3 HOH HOH 2027 A HOH 2028 3 HOH HOH 2028 A HOH 2029 3 HOH HOH 2029 A HOH 2030 3 HOH HOH 2030 A HOH 2031 3 HOH HOH 2031 A HOH 2032 3 HOH HOH 2032 A HOH 2033 3 HOH HOH 2033 A HOH 2034 3 HOH HOH 2034 A HOH 2035 3 HOH HOH 2035 A HOH 2036 3 HOH HOH 2036 A HOH 2037 3 HOH HOH 2037 A HOH 2038 3 HOH HOH 2038 A HOH 2039 3 HOH HOH 2039 A HOH 2040 3 HOH HOH 2040 A HOH 2041 3 HOH HOH 2041 A HOH 2042 3 HOH HOH 2042 A HOH 2043 3 HOH HOH 2043 A HOH 2044 3 HOH HOH 2044 A HOH 2045 3 HOH HOH 2045 A HOH 2046 3 HOH HOH 2046 A HOH 2047 3 HOH HOH 2047 A HOH 2048 3 HOH HOH 2048 A HOH 2049 3 HOH HOH 2049 A HOH 2050 3 HOH HOH 2050 A HOH 2051 3 HOH HOH 2051 A HOH 2052 3 HOH HOH 2052 A HOH 2053 3 HOH HOH 2053 A HOH 2054 3 HOH HOH 2054 A HOH 2055 3 HOH HOH 2055 A HOH 2056 3 HOH HOH 2056 A HOH 2057 3 HOH HOH 2057 A HOH 2058 3 HOH HOH 2058 A HOH 2059 3 HOH HOH 2059 A HOH 2060 3 HOH HOH 2060 A HOH 2061 3 HOH HOH 2061 A HOH 2062 3 HOH HOH 2062 A HOH 2063 3 HOH HOH 2063 A HOH 2064 3 HOH HOH 2064 A HOH 2065 3 HOH HOH 2065 A HOH 2066 3 HOH HOH 2066 A HOH 2067 3 HOH HOH 2067 A HOH 2068 3 HOH HOH 2068 A HOH 2069 3 HOH HOH 2069 A HOH 2070 3 HOH HOH 2070 A HOH 2071 3 HOH HOH 2071 A ASP 3 n 1 ASP 3 A GLY 4 n 2 GLY 4 A ALA 5 n 3 ALA 5 A LYS 6 n 4 LYS 6 A ILE 7 n 5 ILE 7 A TYR 8 n 6 TYR 8 A ALA 9 n 7 ALA 9 A GLN 10 n 8 GLN 10 A CYS 11 n 9 CYS 11 A ALA 12 n 10 ALA 12 A GLY 13 n 11 GLY 13 A CYS 14 n 12 CYS 14 A HIS 15 n 13 HIS 15 A GLN 16 n 14 GLN 16 A GLN 17 n 15 GLN 17 A ASN 18 n 16 ASN 18 A GLY 19 n 17 GLY 19 A GLN 20 n 18 GLN 20 A GLY 21 n 19 GLY 21 A ILE 22 n 20 ILE 22 A PRO 23 n 21 PRO 23 A GLY 24 n 22 GLY 24 A ALA 25 n 23 ALA 25 A PHE 26 n 24 PHE 26 A PRO 27 n 25 PRO 27 A PRO 28 n 26 PRO 28 A LEU 29 n 27 LEU 29 A ALA 30 n 28 ALA 30 A GLY 31 n 29 GLY 31 A HIS 32 n 30 HIS 32 A VAL 33 n 31 VAL 33 A ALA 34 n 32 ALA 34 A GLU 35 n 33 GLU 35 A ILE 36 n 34 ILE 36 A LEU 37 n 35 LEU 37 A ALA 38 n 36 ALA 38 A LYS 39 n 37 LYS 39 A GLU 40 n 38 GLU 40 A GLY 41 n 39 GLY 41 A GLY 42 n 40 GLY 42 A ARG 43 n 41 ARG 43 A GLU 44 n 42 GLU 44 A TYR 45 n 43 TYR 45 A LEU 46 n 44 LEU 46 A ILE 47 n 45 ILE 47 A LEU 48 n 46 LEU 48 A VAL 49 n 47 VAL 49 A LEU 50 n 48 LEU 50 A LEU 51 n 49 LEU 51 A TYR 52 n 50 TYR 52 A GLY 53 n 51 GLY 53 A LEU 54 n 52 LEU 54 A GLN 55 n 53 GLN 55 A GLY 56 n 54 GLY 56 A GLN 57 n 55 GLN 57 A ILE 58 n 56 ILE 58 A GLU 59 n 57 GLU 59 A VAL 60 n 58 VAL 60 A LYS 61 n 59 LYS 61 A GLY 62 n 60 GLY 62 A MET 63 n 61 MET 63 A LYS 64 n 62 LYS 64 A TYR 65 n 63 TYR 65 A ASN 66 n 64 ASN 66 A GLY 67 n 65 GLY 67 A VAL 68 n 66 VAL 68 A MET 69 n 67 MET 69 A SER 70 n 68 SER 70 A SER 71 n 69 SER 71 A PHE 72 n 70 PHE 72 A ALA 73 n 71 ALA 73 A GLN 74 n 72 GLN 74 A LEU 75 n 73 LEU 75 A LYS 76 n 74 LYS 76 A ASP 77 n 75 ASP 77 A GLU 78 n 76 GLU 78 A GLU 79 n 77 GLU 79 A ILE 80 n 78 ILE 80 A ALA 81 n 79 ALA 81 A ALA 82 n 80 ALA 82 A VAL 83 n 81 VAL 83 A LEU 84 n 82 LEU 84 A ASN 85 n 83 ASN 85 A HIS 86 n 84 HIS 86 A ILE 87 n 85 ILE 87 A ALA 88 n 86 ALA 88 A THR 89 n 87 THR 89 A ALA 90 n 88 ALA 90 A TRP 91 n 89 TRP 91 A GLY 92 n 90 GLY 92 A ASP 93 n 91 ASP 93 A ALA 94 n 92 ALA 94 A LYS 95 n 93 LYS 95 A LYS 96 n 94 LYS 96 A VAL 97 n 95 VAL 97 A LYS 98 n 96 LYS 98 A GLY 99 n 97 GLY 99 A PHE 100 n 98 PHE 100 A LYS 101 n 99 LYS 101 A PRO 102 n 100 PRO 102 A PHE 103 n 101 PHE 103 A THR 104 n 102 THR 104 A ALA 105 n 103 ALA 105 A GLU 106 n 104 GLU 106 A GLU 107 n 105 GLU 107 A VAL 108 n 106 VAL 108 A LYS 109 n 107 LYS 109 A LYS 110 n 108 LYS 110 A LEU 111 n 109 LEU 111 A ARG 112 n 110 ARG 112 A ALA 113 n 111 ALA 113 A LYS 114 n 112 LYS 114 A LYS 115 n 113 LYS 115 A LEU 116 n 114 LEU 116 A THR 117 n 115 THR 117 A PRO 118 n 116 PRO 118 A GLN 119 n 117 GLN 119 A GLN 120 n 118 GLN 120 A VAL 121 n 119 VAL 121 A LEU 122 n 120 LEU 122 A ALA 123 n 121 ALA 123 A GLU 124 n 122 GLU 124 A ARG 125 n 123 ARG 125 A LYS 126 n 124 LYS 126 A LYS 127 n 125 LYS 127 A LEU 128 n 126 LEU 128 A GLY 129 n 127 GLY 129 A LEU 130 n 128 LEU 130 A LYS 131 n 129 LYS 131 A author_defined_assembly 1 monomeric A HIS 15 A NE2 HIS 13 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B NA HEC 1_555 91.3 A HIS 15 A NE2 HIS 13 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B NB HEC 1_555 90.9 A HEC 200 B NA HEC 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B NB HEC 1_555 91.1 A HIS 15 A NE2 HIS 13 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B NC HEC 1_555 92.1 A HEC 200 B NA HEC 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B NC HEC 1_555 176.4 A HEC 200 B NB HEC 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B NC HEC 1_555 90.1 A HIS 15 A NE2 HIS 13 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B ND HEC 1_555 92.5 A HEC 200 B NA HEC 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B ND HEC 1_555 90.7 A HEC 200 B NB HEC 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B ND HEC 1_555 176.1 A HEC 200 B NC HEC 1_555 A HEC 200 B FE HEC 1_555 A HEC 200 B ND HEC 1_555 87.9 A HIS 15 A NE2 HIS 13 1_555 A HEC 200 B FE HEC 1_555 A MET 69 A SD MET 67 1_555 171.9 A HEC 200 B NA HEC 1_555 A HEC 200 B FE HEC 1_555 A MET 69 A SD MET 67 1_555 80.7 A HEC 200 B NB HEC 1_555 A HEC 200 B FE HEC 1_555 A MET 69 A SD MET 67 1_555 90.5 A HEC 200 B NC HEC 1_555 A HEC 200 B FE HEC 1_555 A MET 69 A SD MET 67 1_555 96.0 A HEC 200 B ND HEC 1_555 A HEC 200 B FE HEC 1_555 A MET 69 A SD MET 67 1_555 86.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 54 A O LEU 52 A N MET 69 A N MET 67 A N VAL 60 A N VAL 58 A O MET 63 A O MET 61 1 A A C OXT LYS LYS 131 131 0.167 0.019 1.229 1.396 N 1 A GLN 16 78.64 156.51 1 A ASN 66 -149.43 53.29 0.2620000 0.1820000 0.2040000 0.2100000 1.8 25.0 544 10978 10978 random 1 2.0 4.0 engh and huber 1.8 25.0 71 1098 43 0 984 14.9 1.8 25 1DT1 92080 15100 0.0 0.0 0.0700000 1 9.1 3.6 99.2 0.3040000 1.8 1.9 1 3.0 98.8 data reduction XFIT refinement SHELXL-97 data reduction MOSFLM data scaling CCP4 (SCALA) CYTOCHROME C552 THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI 1 N N 2 N N 3 N N The biological unit is a monomer as found in the asymmetric unit A ASP 3 A ASP 1 HELX_P A GLN 16 A GLN 14 1 1 14 A HIS 32 A HIS 30 HELX_P A ALA 38 A ALA 36 1 2 7 A GLY 41 A GLY 39 HELX_P A GLY 53 A GLY 51 1 3 13 A LYS 76 A LYS 74 HELX_P A ALA 90 A ALA 88 1 4 15 A GLY 92 A GLY 90 HELX_P A VAL 97 A VAL 95 5 5 6 A THR 104 A THR 102 HELX_P A ALA 113 A ALA 111 1 6 10 A THR 117 A THR 115 HELX_P A LEU 128 A LEU 126 1 7 12 covale 1.813 none A CYS 11 A SG CYS 9 1_555 A HEC 200 B CAB HEC 1_555 covale 1.843 none A CYS 14 A SG CYS 12 1_555 A HEC 200 B CAC HEC 1_555 metalc 2.007 A HIS 15 A NE2 HIS 13 1_555 A HEC 200 B FE HEC 1_555 metalc 2.300 A MET 69 A SD MET 67 1_555 A HEC 200 B FE HEC 1_555 OXIDOREDUCTASE Cytochrome C552, Thermus thermophilus, OXIDOREDUCTASE Q5SME3_THET8 UNP 1 Q5SME3 20 148 1DT1 3 131 Q5SME3 A 1 1 129 2 2 anti-parallel anti-parallel A LEU 54 A LEU 52 A GLN 55 A GLN 53 A VAL 68 A VAL 66 A MET 69 A MET 67 A ILE 58 A ILE 56 A VAL 60 A VAL 58 A MET 63 A MET 61 A TYR 65 A TYR 63 BINDING SITE FOR RESIDUE HEC A 200 A HEC 200 Software 18 A GLN 10 A GLN 8 18 1_555 A CYS 11 A CYS 9 18 1_555 A CYS 14 A CYS 12 18 1_555 A HIS 15 A HIS 13 18 1_555 A ALA 25 A ALA 23 18 1_555 A PRO 27 A PRO 25 18 1_555 A HIS 32 A HIS 30 18 1_555 A TYR 45 A TYR 43 18 1_555 A LEU 46 A LEU 44 18 1_555 A GLN 55 A GLN 53 18 1_555 A GLY 56 A GLY 54 18 1_555 A VAL 60 A VAL 58 18 1_555 A GLY 67 A GLY 65 18 1_555 A VAL 68 A VAL 66 18 1_555 A MET 69 A MET 67 18 1_555 A PHE 72 A PHE 70 18 1_555 A GLU 106 A GLU 104 18 1_556 A ARG 125 A ARG 123 18 1_555 170 P 65