0.011507
0.006644
0.000000
0.000000
0.013288
0.000000
0.000000
0.000000
0.031397
0.000000
0.000000
0.000000
Fee, J.A.
Chen, Y.
Hill, M.J.
Gomez-Moran, E.
Loehr, T.
Ai, J.
Thony-Meyer, L.
Williams, P.A.
Stura, E.
Sridhar, V.
McRee, D.E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
86.900
86.900
31.850
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C34 H34 Fe N4 O4
618.503
HEME C
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Protein Sci.
PRCIEI
0795
0961-8368
9
2074
2084
11152119
Integrity of thermus thermophilus cytochrome c552 synthesized by Escherichia coli cells expressing the host-specific cytochrome c maturation genes, ccmABCDEFGH: biochemical, spectral, and structural characterization of the recombinant protein.
2000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
1999-11-14
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.08
1.0
BL7-1
SSRL
1.08
SYNCHROTRON
SSRL BEAMLINE BL7-1
13995.368
CYTOCHROME C552
1
man
polymer
618.503
HEME C
1
syn
non-polymer
18.015
water
71
nat
water
no
no
DGAKIYAQCAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQLKDEEIAA
VLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKKLGLK
DGAKIYAQCAGCHQQNGQGIPGAFPPLAGHVAEILAKEGGREYLILVLLYGLQGQIEVKGMKYNGVMSSFAQLKDEEIAA
VLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERKKLGLK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Thermus thermophilus
HB8
Escherichia
sample
300852
Thermus thermophilus
562
Escherichia coli
1
2.48
50.40
VAPOR DIFFUSION, SITTING DROP
6.3
36% MPEG 5K (w/v), 0.2M Im-mat 6.3, VAPOR DIFFUSION, SITTING DROP, temperature 24K
297.0
exptl_crystal_grow
atom_site
atom_site_anisotrop
chem_comp
entity
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_conn
struct_conn_type
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Experimental preparation
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
1
0
2000-02-18
1
1
2008-04-27
1
2
2011-07-13
1
3
2018-01-31
2
0
2021-03-03
_exptl_crystal_grow.temp
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.type_symbol
_atom_site_anisotrop.id
_atom_site_anisotrop.pdbx_auth_comp_id
_atom_site_anisotrop.pdbx_label_comp_id
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.name
_chem_comp.pdbx_synonyms
_entity.formula_weight
_entity.pdbx_description
_pdbx_entity_nonpoly.comp_id
_pdbx_entity_nonpoly.name
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
_struct_site.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2000-01-10
REL
REL
HEC
HEME C
HOH
water
HEM
200
2
HEC
HEC
200
A
HOH
2001
3
HOH
HOH
2001
A
HOH
2002
3
HOH
HOH
2002
A
HOH
2003
3
HOH
HOH
2003
A
HOH
2004
3
HOH
HOH
2004
A
HOH
2005
3
HOH
HOH
2005
A
HOH
2006
3
HOH
HOH
2006
A
HOH
2007
3
HOH
HOH
2007
A
HOH
2008
3
HOH
HOH
2008
A
HOH
2009
3
HOH
HOH
2009
A
HOH
2010
3
HOH
HOH
2010
A
HOH
2011
3
HOH
HOH
2011
A
HOH
2012
3
HOH
HOH
2012
A
HOH
2013
3
HOH
HOH
2013
A
HOH
2014
3
HOH
HOH
2014
A
HOH
2015
3
HOH
HOH
2015
A
HOH
2016
3
HOH
HOH
2016
A
HOH
2017
3
HOH
HOH
2017
A
HOH
2018
3
HOH
HOH
2018
A
HOH
2019
3
HOH
HOH
2019
A
HOH
2020
3
HOH
HOH
2020
A
HOH
2021
3
HOH
HOH
2021
A
HOH
2022
3
HOH
HOH
2022
A
HOH
2023
3
HOH
HOH
2023
A
HOH
2024
3
HOH
HOH
2024
A
HOH
2025
3
HOH
HOH
2025
A
HOH
2026
3
HOH
HOH
2026
A
HOH
2027
3
HOH
HOH
2027
A
HOH
2028
3
HOH
HOH
2028
A
HOH
2029
3
HOH
HOH
2029
A
HOH
2030
3
HOH
HOH
2030
A
HOH
2031
3
HOH
HOH
2031
A
HOH
2032
3
HOH
HOH
2032
A
HOH
2033
3
HOH
HOH
2033
A
HOH
2034
3
HOH
HOH
2034
A
HOH
2035
3
HOH
HOH
2035
A
HOH
2036
3
HOH
HOH
2036
A
HOH
2037
3
HOH
HOH
2037
A
HOH
2038
3
HOH
HOH
2038
A
HOH
2039
3
HOH
HOH
2039
A
HOH
2040
3
HOH
HOH
2040
A
HOH
2041
3
HOH
HOH
2041
A
HOH
2042
3
HOH
HOH
2042
A
HOH
2043
3
HOH
HOH
2043
A
HOH
2044
3
HOH
HOH
2044
A
HOH
2045
3
HOH
HOH
2045
A
HOH
2046
3
HOH
HOH
2046
A
HOH
2047
3
HOH
HOH
2047
A
HOH
2048
3
HOH
HOH
2048
A
HOH
2049
3
HOH
HOH
2049
A
HOH
2050
3
HOH
HOH
2050
A
HOH
2051
3
HOH
HOH
2051
A
HOH
2052
3
HOH
HOH
2052
A
HOH
2053
3
HOH
HOH
2053
A
HOH
2054
3
HOH
HOH
2054
A
HOH
2055
3
HOH
HOH
2055
A
HOH
2056
3
HOH
HOH
2056
A
HOH
2057
3
HOH
HOH
2057
A
HOH
2058
3
HOH
HOH
2058
A
HOH
2059
3
HOH
HOH
2059
A
HOH
2060
3
HOH
HOH
2060
A
HOH
2061
3
HOH
HOH
2061
A
HOH
2062
3
HOH
HOH
2062
A
HOH
2063
3
HOH
HOH
2063
A
HOH
2064
3
HOH
HOH
2064
A
HOH
2065
3
HOH
HOH
2065
A
HOH
2066
3
HOH
HOH
2066
A
HOH
2067
3
HOH
HOH
2067
A
HOH
2068
3
HOH
HOH
2068
A
HOH
2069
3
HOH
HOH
2069
A
HOH
2070
3
HOH
HOH
2070
A
HOH
2071
3
HOH
HOH
2071
A
ASP
3
n
1
ASP
3
A
GLY
4
n
2
GLY
4
A
ALA
5
n
3
ALA
5
A
LYS
6
n
4
LYS
6
A
ILE
7
n
5
ILE
7
A
TYR
8
n
6
TYR
8
A
ALA
9
n
7
ALA
9
A
GLN
10
n
8
GLN
10
A
CYS
11
n
9
CYS
11
A
ALA
12
n
10
ALA
12
A
GLY
13
n
11
GLY
13
A
CYS
14
n
12
CYS
14
A
HIS
15
n
13
HIS
15
A
GLN
16
n
14
GLN
16
A
GLN
17
n
15
GLN
17
A
ASN
18
n
16
ASN
18
A
GLY
19
n
17
GLY
19
A
GLN
20
n
18
GLN
20
A
GLY
21
n
19
GLY
21
A
ILE
22
n
20
ILE
22
A
PRO
23
n
21
PRO
23
A
GLY
24
n
22
GLY
24
A
ALA
25
n
23
ALA
25
A
PHE
26
n
24
PHE
26
A
PRO
27
n
25
PRO
27
A
PRO
28
n
26
PRO
28
A
LEU
29
n
27
LEU
29
A
ALA
30
n
28
ALA
30
A
GLY
31
n
29
GLY
31
A
HIS
32
n
30
HIS
32
A
VAL
33
n
31
VAL
33
A
ALA
34
n
32
ALA
34
A
GLU
35
n
33
GLU
35
A
ILE
36
n
34
ILE
36
A
LEU
37
n
35
LEU
37
A
ALA
38
n
36
ALA
38
A
LYS
39
n
37
LYS
39
A
GLU
40
n
38
GLU
40
A
GLY
41
n
39
GLY
41
A
GLY
42
n
40
GLY
42
A
ARG
43
n
41
ARG
43
A
GLU
44
n
42
GLU
44
A
TYR
45
n
43
TYR
45
A
LEU
46
n
44
LEU
46
A
ILE
47
n
45
ILE
47
A
LEU
48
n
46
LEU
48
A
VAL
49
n
47
VAL
49
A
LEU
50
n
48
LEU
50
A
LEU
51
n
49
LEU
51
A
TYR
52
n
50
TYR
52
A
GLY
53
n
51
GLY
53
A
LEU
54
n
52
LEU
54
A
GLN
55
n
53
GLN
55
A
GLY
56
n
54
GLY
56
A
GLN
57
n
55
GLN
57
A
ILE
58
n
56
ILE
58
A
GLU
59
n
57
GLU
59
A
VAL
60
n
58
VAL
60
A
LYS
61
n
59
LYS
61
A
GLY
62
n
60
GLY
62
A
MET
63
n
61
MET
63
A
LYS
64
n
62
LYS
64
A
TYR
65
n
63
TYR
65
A
ASN
66
n
64
ASN
66
A
GLY
67
n
65
GLY
67
A
VAL
68
n
66
VAL
68
A
MET
69
n
67
MET
69
A
SER
70
n
68
SER
70
A
SER
71
n
69
SER
71
A
PHE
72
n
70
PHE
72
A
ALA
73
n
71
ALA
73
A
GLN
74
n
72
GLN
74
A
LEU
75
n
73
LEU
75
A
LYS
76
n
74
LYS
76
A
ASP
77
n
75
ASP
77
A
GLU
78
n
76
GLU
78
A
GLU
79
n
77
GLU
79
A
ILE
80
n
78
ILE
80
A
ALA
81
n
79
ALA
81
A
ALA
82
n
80
ALA
82
A
VAL
83
n
81
VAL
83
A
LEU
84
n
82
LEU
84
A
ASN
85
n
83
ASN
85
A
HIS
86
n
84
HIS
86
A
ILE
87
n
85
ILE
87
A
ALA
88
n
86
ALA
88
A
THR
89
n
87
THR
89
A
ALA
90
n
88
ALA
90
A
TRP
91
n
89
TRP
91
A
GLY
92
n
90
GLY
92
A
ASP
93
n
91
ASP
93
A
ALA
94
n
92
ALA
94
A
LYS
95
n
93
LYS
95
A
LYS
96
n
94
LYS
96
A
VAL
97
n
95
VAL
97
A
LYS
98
n
96
LYS
98
A
GLY
99
n
97
GLY
99
A
PHE
100
n
98
PHE
100
A
LYS
101
n
99
LYS
101
A
PRO
102
n
100
PRO
102
A
PHE
103
n
101
PHE
103
A
THR
104
n
102
THR
104
A
ALA
105
n
103
ALA
105
A
GLU
106
n
104
GLU
106
A
GLU
107
n
105
GLU
107
A
VAL
108
n
106
VAL
108
A
LYS
109
n
107
LYS
109
A
LYS
110
n
108
LYS
110
A
LEU
111
n
109
LEU
111
A
ARG
112
n
110
ARG
112
A
ALA
113
n
111
ALA
113
A
LYS
114
n
112
LYS
114
A
LYS
115
n
113
LYS
115
A
LEU
116
n
114
LEU
116
A
THR
117
n
115
THR
117
A
PRO
118
n
116
PRO
118
A
GLN
119
n
117
GLN
119
A
GLN
120
n
118
GLN
120
A
VAL
121
n
119
VAL
121
A
LEU
122
n
120
LEU
122
A
ALA
123
n
121
ALA
123
A
GLU
124
n
122
GLU
124
A
ARG
125
n
123
ARG
125
A
LYS
126
n
124
LYS
126
A
LYS
127
n
125
LYS
127
A
LEU
128
n
126
LEU
128
A
GLY
129
n
127
GLY
129
A
LEU
130
n
128
LEU
130
A
LYS
131
n
129
LYS
131
A
author_defined_assembly
1
monomeric
A
HIS
15
A
NE2
HIS
13
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NA
HEC
1_555
91.3
A
HIS
15
A
NE2
HIS
13
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NB
HEC
1_555
90.9
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NB
HEC
1_555
91.1
A
HIS
15
A
NE2
HIS
13
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NC
HEC
1_555
92.1
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NC
HEC
1_555
176.4
A
HEC
200
B
NB
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
NC
HEC
1_555
90.1
A
HIS
15
A
NE2
HIS
13
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
92.5
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
90.7
A
HEC
200
B
NB
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
176.1
A
HEC
200
B
NC
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
HEC
200
B
ND
HEC
1_555
87.9
A
HIS
15
A
NE2
HIS
13
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
69
A
SD
MET
67
1_555
171.9
A
HEC
200
B
NA
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
69
A
SD
MET
67
1_555
80.7
A
HEC
200
B
NB
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
69
A
SD
MET
67
1_555
90.5
A
HEC
200
B
NC
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
69
A
SD
MET
67
1_555
96.0
A
HEC
200
B
ND
HEC
1_555
A
HEC
200
B
FE
HEC
1_555
A
MET
69
A
SD
MET
67
1_555
86.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
54
A
O
LEU
52
A
N
MET
69
A
N
MET
67
A
N
VAL
60
A
N
VAL
58
A
O
MET
63
A
O
MET
61
1
A
A
C
OXT
LYS
LYS
131
131
0.167
0.019
1.229
1.396
N
1
A
GLN
16
78.64
156.51
1
A
ASN
66
-149.43
53.29
0.2620000
0.1820000
0.2040000
0.2100000
1.8
25.0
544
10978
10978
random
1
2.0
4.0
engh and huber
1.8
25.0
71
1098
43
0
984
14.9
1.8
25
1DT1
92080
15100
0.0
0.0
0.0700000
1
9.1
3.6
99.2
0.3040000
1.8
1.9
1
3.0
98.8
data reduction
XFIT
refinement
SHELXL-97
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
CYTOCHROME C552
THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI
1
N
N
2
N
N
3
N
N
The biological unit is a monomer
as found in the asymmetric unit
A
ASP
3
A
ASP
1
HELX_P
A
GLN
16
A
GLN
14
1
1
14
A
HIS
32
A
HIS
30
HELX_P
A
ALA
38
A
ALA
36
1
2
7
A
GLY
41
A
GLY
39
HELX_P
A
GLY
53
A
GLY
51
1
3
13
A
LYS
76
A
LYS
74
HELX_P
A
ALA
90
A
ALA
88
1
4
15
A
GLY
92
A
GLY
90
HELX_P
A
VAL
97
A
VAL
95
5
5
6
A
THR
104
A
THR
102
HELX_P
A
ALA
113
A
ALA
111
1
6
10
A
THR
117
A
THR
115
HELX_P
A
LEU
128
A
LEU
126
1
7
12
covale
1.813
none
A
CYS
11
A
SG
CYS
9
1_555
A
HEC
200
B
CAB
HEC
1_555
covale
1.843
none
A
CYS
14
A
SG
CYS
12
1_555
A
HEC
200
B
CAC
HEC
1_555
metalc
2.007
A
HIS
15
A
NE2
HIS
13
1_555
A
HEC
200
B
FE
HEC
1_555
metalc
2.300
A
MET
69
A
SD
MET
67
1_555
A
HEC
200
B
FE
HEC
1_555
OXIDOREDUCTASE
Cytochrome C552, Thermus thermophilus, OXIDOREDUCTASE
Q5SME3_THET8
UNP
1
Q5SME3
20
148
1DT1
3
131
Q5SME3
A
1
1
129
2
2
anti-parallel
anti-parallel
A
LEU
54
A
LEU
52
A
GLN
55
A
GLN
53
A
VAL
68
A
VAL
66
A
MET
69
A
MET
67
A
ILE
58
A
ILE
56
A
VAL
60
A
VAL
58
A
MET
63
A
MET
61
A
TYR
65
A
TYR
63
BINDING SITE FOR RESIDUE HEC A 200
A
HEC
200
Software
18
A
GLN
10
A
GLN
8
18
1_555
A
CYS
11
A
CYS
9
18
1_555
A
CYS
14
A
CYS
12
18
1_555
A
HIS
15
A
HIS
13
18
1_555
A
ALA
25
A
ALA
23
18
1_555
A
PRO
27
A
PRO
25
18
1_555
A
HIS
32
A
HIS
30
18
1_555
A
TYR
45
A
TYR
43
18
1_555
A
LEU
46
A
LEU
44
18
1_555
A
GLN
55
A
GLN
53
18
1_555
A
GLY
56
A
GLY
54
18
1_555
A
VAL
60
A
VAL
58
18
1_555
A
GLY
67
A
GLY
65
18
1_555
A
VAL
68
A
VAL
66
18
1_555
A
MET
69
A
MET
67
18
1_555
A
PHE
72
A
PHE
70
18
1_555
A
GLU
106
A
GLU
104
18
1_556
A
ARG
125
A
ARG
123
18
1_555
170
P 65